RNA–Protein interactions for RNA: ENST00000425660.5

ACTB-204, Transcript of actin beta, humanhuman

TSL 1 (best)

Gene ACTB, Length 1,845 nt, Biotype nonsense mediated decay, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-204ENST00000425660 PCGF6Q9BYE7 350 aa23.79■■□□□ 1.4
ACTB-204ENST00000425660 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
ACTB-204ENST00000425660 MAGI1Q96QZ7 1491 aaPredicted RBP23.75■■□□□ 1.39
ACTB-204ENST00000425660 EFCAB5A4FU69 1503 aa23.73■■□□□ 1.39
ACTB-204ENST00000425660 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
ACTB-204ENST00000425660 GRIN2AQ12879 1464 aa23.65■■□□□ 1.38
ACTB-204ENST00000425660 SYNJ2O15056 1496 aa23.65■■□□□ 1.38
ACTB-204ENST00000425660 SAMD9Q5K651 1589 aa23.63■■□□□ 1.37
ACTB-204ENST00000425660 IQGAP2Q13576 1575 aa23.6■■□□□ 1.37
ACTB-204ENST00000425660 APLP2Q06481 763 aa23.59■■□□□ 1.37
ACTB-204ENST00000425660 KIAA0586Q9BVV6 1533 aa23.57■■□□□ 1.36
ACTB-204ENST00000425660 FHOD3Q2V2M9 1422 aa23.56■■□□□ 1.36
ACTB-204ENST00000425660 CHMP7Q8WUX9 453 aaPredicted RBP23.54■■□□□ 1.36
ACTB-204ENST00000425660 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
ACTB-204ENST00000425660 UGGT2Q9NYU1 1516 aa23.52■■□□□ 1.36
ACTB-204ENST00000425660 NUP160Q12769 1436 aa23.51■■□□□ 1.35
ACTB-204ENST00000425660 FMN1Q68DA7 1419 aa23.51■■□□□ 1.35
ACTB-204ENST00000425660 P3H3Q8IVL6 736 aa23.5■■□□□ 1.35
ACTB-204ENST00000425660 CEP170Q5SW79 1584 aa23.49■■□□□ 1.35
ACTB-204ENST00000425660 FYCO1Q9BQS8 1478 aa23.47■■□□□ 1.35
ACTB-204ENST00000425660 CASKIN1Q8WXD9 1431 aa23.47■■□□□ 1.35
ACTB-204ENST00000425660 PCF11O94913 1555 aaKnown RBP23.47■■□□□ 1.35
ACTB-204ENST00000425660 TTBK1Q5TCY1 1321 aaPredicted RBP23.44■■□□□ 1.34
ACTB-204ENST00000425660 TIAM1Q13009 1591 aa23.43■■□□□ 1.34
ACTB-204ENST00000425660 FBLN2P98095 1184 aa23.41■■□□□ 1.34
ACTB-204ENST00000425660 KANK4Q5T7N3 995 aaPredicted RBP23.4■■□□□ 1.34
ACTB-204ENST00000425660 DISP1Q96F81 1524 aa23.39■■□□□ 1.34
ACTB-204ENST00000425660 KIAA0556O60303 1618 aa23.36■■□□□ 1.33
ACTB-204ENST00000425660 CFAP43Q8NDM7 1665 aa23.36■■□□□ 1.33
ACTB-204ENST00000425660 LRRC9Q6ZRR7 1453 aa23.33■■□□□ 1.33
ACTB-204ENST00000425660 CHD1O14646 1710 aa23.29■■□□□ 1.32
ACTB-204ENST00000425660 JPH4Q96JJ6 628 aa23.29■■□□□ 1.32
ACTB-204ENST00000425660 CARMIL2Q6F5E8 1435 aa23.24■■□□□ 1.31
ACTB-204ENST00000425660 ATP1B4Q9UN42 357 aaPredicted RBP23.23■■□□□ 1.31
ACTB-204ENST00000425660 HECW1Q76N89 1606 aa23.23■■□□□ 1.31
ACTB-204ENST00000425660 RRBP1Q9P2E9 1410 aaKnown RBP23.22■■□□□ 1.31
ACTB-204ENST00000425660 LRRIQ1Q96JM4 1722 aa23.22■■□□□ 1.31
ACTB-204ENST00000425660 CCDC18Q5T9S5 1454 aa23.22■■□□□ 1.31
ACTB-204ENST00000425660 HRCP23327 699 aa23.19■■□□□ 1.3
ACTB-204ENST00000425660 EPRSP07814 1512 aaKnown RBP23.16■■□□□ 1.3
ACTB-204ENST00000425660 SHROOM2Q13796 1616 aa23.16■■□□□ 1.3
ACTB-204ENST00000425660 RAPGEF6Q8TEU7 1601 aa23.13■■□□□ 1.29
ACTB-204ENST00000425660 PRG4Q92954 1404 aaPredicted RBP23.12■■□□□ 1.29
ACTB-204ENST00000425660 MTUS2Q5JR59 1369 aa23.11■■□□□ 1.29
ACTB-204ENST00000425660 PHLDB1Q86UU1 1377 aa23.11■■□□□ 1.29
ACTB-204ENST00000425660 NUP153P49790 1475 aaKnown RBP23.11■■□□□ 1.29
ACTB-204ENST00000425660 CCNB3Q8WWL7 1395 aa23.11■■□□□ 1.29
ACTB-204ENST00000425660 CLASP1Q7Z460 1538 aa23.11■■□□□ 1.29
ACTB-204ENST00000425660 EHBP1L1Q8N3D4 1523 aa23.1■■□□□ 1.29
ACTB-204ENST00000425660 MAGI3Q5TCQ9 1506 aa23.07■■□□□ 1.28
ACTB-204ENST00000425660 PLB1Q6P1J6 1458 aa23.06■■□□□ 1.28
ACTB-204ENST00000425660 CDK13Q14004 1512 aaKnown RBP23.05■■□□□ 1.28
ACTB-204ENST00000425660 ABCA8O94911 1581 aa23.04■■□□□ 1.28
ACTB-204ENST00000425660 ARHGEF11O15085 1522 aa23.03■■□□□ 1.28
ACTB-204ENST00000425660 SUPT6HQ7KZ85 1726 aaKnown RBP23.02■■□□□ 1.27
ACTB-204ENST00000425660 NCOA2Q15596 1464 aa23.01■■□□□ 1.27
ACTB-204ENST00000425660 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
ACTB-204ENST00000425660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23■■□□□ 1.274e-28■■□□□ 12.2
ACTB-204ENST00000425660 HNRNPUL2Q1KMD3 747 aaKnown RBP22.99■■□□□ 1.27
ACTB-204ENST00000425660 PTPRGP23470 1445 aa22.99■■□□□ 1.27
ACTB-204ENST00000425660 FGD6Q6ZV73 1430 aa22.95■■□□□ 1.26
ACTB-204ENST00000425660 MYOM3Q5VTT5 1437 aa22.94■■□□□ 1.26
ACTB-204ENST00000425660 ERCC6L2Q5T890 1561 aa22.93■■□□□ 1.26
ACTB-204ENST00000425660 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
ACTB-204ENST00000425660 ARID3CA6NKF2 412 aa22.91■■□□□ 1.26
ACTB-204ENST00000425660 ZEB1P37275 1124 aaPredicted RBP22.91■■□□□ 1.26
ACTB-204ENST00000425660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.89■■□□□ 1.26
ACTB-204ENST00000425660 TROQ12816 1431 aaPredicted RBP22.88■■□□□ 1.25
ACTB-204ENST00000425660 UACAQ9BZF9 1416 aa22.88■■□□□ 1.25
ACTB-204ENST00000425660 ATP10BO94823 1461 aa22.88■■□□□ 1.25
ACTB-204ENST00000425660 MIA2Q96PC5 1412 aa22.84■■□□□ 1.25
ACTB-204ENST00000425660 FAM50AQ14320 339 aaKnown RBP22.83■■□□□ 1.25
ACTB-204ENST00000425660 CCER1Q8TC90 406 aaPredicted RBP22.83■■□□□ 1.25
ACTB-204ENST00000425660 ADCY10Q96PN6 1610 aa22.83■■□□□ 1.24
ACTB-204ENST00000425660 TCOF1Q13428 1488 aaKnown RBP22.82■■□□□ 1.24
ACTB-204ENST00000425660 ABCC2Q92887 1545 aa22.82■■□□□ 1.24
ACTB-204ENST00000425660 PTPN23Q9H3S7 1636 aa22.79■■□□□ 1.24
ACTB-204ENST00000425660 UHRF1BP1LA0JNW5 1464 aa22.79■■□□□ 1.24
ACTB-204ENST00000425660 PLEKHD1A6NEE1 506 aa22.76■■□□□ 1.23
ACTB-204ENST00000425660 ITGAEP38570 1179 aa22.76■■□□□ 1.23
ACTB-204ENST00000425660 KIF14Q15058 1648 aa22.73■■□□□ 1.23
ACTB-204ENST00000425660 ABCC10Q5T3U5 1492 aa22.69■■□□□ 1.22
ACTB-204ENST00000425660 KDM5BQ9UGL1 1544 aa22.69■■□□□ 1.22
ACTB-204ENST00000425660 GPATCH8Q9UKJ3 1502 aaKnown RBP22.69■■□□□ 1.22
ACTB-204ENST00000425660 PTPRKQ15262 1439 aa22.69■■□□□ 1.22
ACTB-204ENST00000425660 SETD5Q9C0A6 1442 aa22.69■■□□□ 1.22
ACTB-204ENST00000425660 ITSN2Q9NZM3 1697 aa22.68■■□□□ 1.22
ACTB-204ENST00000425660 RAB3GAP2Q9H2M9 1393 aa22.67■■□□□ 1.22
ACTB-204ENST00000425660 DHX57Q6P158 1386 aaKnown RBP22.63■■□□□ 1.21
ACTB-204ENST00000425660 HFM1A2PYH4 1435 aa22.63■■□□□ 1.21
ACTB-204ENST00000425660 CLSPNQ9HAW4 1339 aa22.62■■□□□ 1.21
ACTB-204ENST00000425660 ZCCHC11Q5TAX3 1644 aaKnown RBP22.62■■□□□ 1.21
ACTB-204ENST00000425660 CFDP1Q9UEE9 299 aaPredicted RBP22.6■■□□□ 1.21
ACTB-204ENST00000425660 AKNAQ7Z591 1439 aa22.6■■□□□ 1.21
ACTB-204ENST00000425660 CDC42BPAQ5VT25 1732 aa22.59■■□□□ 1.21
ACTB-204ENST00000425660 CAMSAP2Q08AD1 1489 aa22.57■■□□□ 1.2
ACTB-204ENST00000425660 DNMT1P26358 1616 aaKnown RBP22.57■■□□□ 1.2
ACTB-204ENST00000425660 ZNF644Q9H582 1327 aaPredicted RBP22.56■■□□□ 1.2
ACTB-204ENST00000425660 DAPK1P53355 1430 aa22.56■■□□□ 1.2
ACTB-204ENST00000425660 NAIPQ13075 1403 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms