RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 MAGI1Q96QZ7 1491 aaPredicted RBP32.89■■■□□ 2.86
GPC1-202ENST00000420138 TRIM26Q12899 539 aaPredicted RBP32.88■■■□□ 2.85
GPC1-202ENST00000420138 CTTNBP2Q8WZ74 1663 aa32.85■■■□□ 2.85
GPC1-202ENST00000420138 PPARGC1BQ86YN6 1023 aaKnown RBP32.84■■■□□ 2.85
GPC1-202ENST00000420138 SYNJ2O15056 1496 aa32.76■■■□□ 2.84
GPC1-202ENST00000420138 GRIN2AQ12879 1464 aa32.72■■■□□ 2.83
GPC1-202ENST00000420138 CHMP7Q8WUX9 453 aaPredicted RBP32.67■■■□□ 2.82
GPC1-202ENST00000420138 FBLN2P98095 1184 aa32.64■■■□□ 2.82
GPC1-202ENST00000420138 EFCAB5A4FU69 1503 aa32.64■■■□□ 2.82
GPC1-202ENST00000420138 CHD1O14646 1710 aa32.61■■■□□ 2.81
GPC1-202ENST00000420138 P3H3Q8IVL6 736 aa32.55■■■□□ 2.8
GPC1-202ENST00000420138 FHOD3Q2V2M9 1422 aa32.55■■■□□ 2.8
GPC1-202ENST00000420138 IQGAP2Q13576 1575 aa32.55■■■□□ 2.8
GPC1-202ENST00000420138 SAMD9Q5K651 1589 aa32.55■■■□□ 2.8
GPC1-202ENST00000420138 CEP170Q5SW79 1584 aa32.54■■■□□ 2.8
GPC1-202ENST00000420138 TTBK1Q5TCY1 1321 aaPredicted RBP32.52■■■□□ 2.8
GPC1-202ENST00000420138 APLP2Q06481 763 aa32.49■■■□□ 2.79
GPC1-202ENST00000420138 KIAA0586Q9BVV6 1533 aa32.48■■■□□ 2.79
GPC1-202ENST00000420138 NUP160Q12769 1436 aa32.47■■■□□ 2.79
GPC1-202ENST00000420138 UGGT2Q9NYU1 1516 aa32.4■■■□□ 2.78
GPC1-202ENST00000420138 PCF11O94913 1555 aaKnown RBP32.38■■■□□ 2.77
GPC1-202ENST00000420138 KANK4Q5T7N3 995 aaPredicted RBP32.37■■■□□ 2.77
GPC1-202ENST00000420138 FMN1Q68DA7 1419 aa32.35■■■□□ 2.77
GPC1-202ENST00000420138 MAP3K1Q13233 1512 aa32.35■■■□□ 2.77
GPC1-202ENST00000420138 CASKIN1Q8WXD9 1431 aa32.34■■■□□ 2.77
GPC1-202ENST00000420138 FYCO1Q9BQS8 1478 aa32.31■■■□□ 2.76
GPC1-202ENST00000420138 TIAM1Q13009 1591 aa32.29■■■□□ 2.76
GPC1-202ENST00000420138 DISP1Q96F81 1524 aa32.27■■■□□ 2.76
GPC1-202ENST00000420138 KIAA0556O60303 1618 aa32.22■■■□□ 2.75
GPC1-202ENST00000420138 HRCP23327 699 aa32.2■■■□□ 2.75
GPC1-202ENST00000420138 JPH4Q96JJ6 628 aa32.19■■■□□ 2.74
GPC1-202ENST00000420138 CFAP43Q8NDM7 1665 aa32.18■■■□□ 2.74
GPC1-202ENST00000420138 LRRC9Q6ZRR7 1453 aa32.16■■■□□ 2.74
GPC1-202ENST00000420138 CLASP1Q7Z460 1538 aa32.15■■■□□ 2.74
GPC1-202ENST00000420138 ATP1B4Q9UN42 357 aaPredicted RBP32.14■■■□□ 2.74
GPC1-202ENST00000420138 SHROOM2Q13796 1616 aa32.14■■■□□ 2.74
GPC1-202ENST00000420138 CARMIL2Q6F5E8 1435 aa32.1■■■□□ 2.73
GPC1-202ENST00000420138 LRRIQ1Q96JM4 1722 aa32.06■■■□□ 2.72
GPC1-202ENST00000420138 PRG4Q92954 1404 aaPredicted RBP32.04■■■□□ 2.72
GPC1-202ENST00000420138 RRBP1Q9P2E9 1410 aaKnown RBP31.99■■■□□ 2.71
GPC1-202ENST00000420138 HECW1Q76N89 1606 aa31.98■■■□□ 2.71
GPC1-202ENST00000420138 OSCARQ8IYS5 282 aa31.97■■■□□ 2.71
GPC1-202ENST00000420138 CCDC18Q5T9S5 1454 aa31.94■■■□□ 2.7
GPC1-202ENST00000420138 EPRSP07814 1512 aaKnown RBP31.93■■■□□ 2.7
GPC1-202ENST00000420138 PHLDB1Q86UU1 1377 aa31.92■■■□□ 2.7
GPC1-202ENST00000420138 ERCC6L2Q5T890 1561 aa31.9■■■□□ 2.7
GPC1-202ENST00000420138 RAPGEF6Q8TEU7 1601 aa31.88■■■□□ 2.69
GPC1-202ENST00000420138 NUP153P49790 1475 aaKnown RBP31.87■■■□□ 2.69
GPC1-202ENST00000420138 MAGI3Q5TCQ9 1506 aa31.87■■■□□ 2.69
GPC1-202ENST00000420138 MTUS2Q5JR59 1369 aa31.86■■■□□ 2.69
GPC1-202ENST00000420138 CCNB3Q8WWL7 1395 aa31.86■■■□□ 2.69
GPC1-202ENST00000420138 CDK13Q14004 1512 aaKnown RBP31.85■■■□□ 2.69
GPC1-202ENST00000420138 PLB1Q6P1J6 1458 aa31.84■■■□□ 2.69
GPC1-202ENST00000420138 HNRNPUL2Q1KMD3 747 aaKnown RBP31.82■■■□□ 2.68
GPC1-202ENST00000420138 EHBP1L1Q8N3D4 1523 aa31.82■■■□□ 2.68
GPC1-202ENST00000420138 PTPRGP23470 1445 aa31.79■■■□□ 2.68
GPC1-202ENST00000420138 ABCA8O94911 1581 aa31.76■■■□□ 2.67
GPC1-202ENST00000420138 ARID3CA6NKF2 412 aa31.75■■■□□ 2.67
GPC1-202ENST00000420138 NCOA2Q15596 1464 aa31.74■■■□□ 2.67
GPC1-202ENST00000420138 ARHGEF11O15085 1522 aa31.73■■■□□ 2.67
GPC1-202ENST00000420138 SUPT6HQ7KZ85 1726 aaKnown RBP31.69■■■□□ 2.66
GPC1-202ENST00000420138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.69■■■□□ 2.66
GPC1-202ENST00000420138 FGD6Q6ZV73 1430 aa31.64■■■□□ 2.66
GPC1-202ENST00000420138 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.62■■■□□ 2.65
GPC1-202ENST00000420138 MYOM3Q5VTT5 1437 aa31.62■■■□□ 2.65
GPC1-202ENST00000420138 UACAQ9BZF9 1416 aa31.62■■■□□ 2.65
GPC1-202ENST00000420138 ATP10BO94823 1461 aa31.58■■■□□ 2.65
GPC1-202ENST00000420138 ABCC2Q92887 1545 aa31.56■■■□□ 2.64
GPC1-202ENST00000420138 CDK11AQ9UQ88 783 aaPredicted RBP31.56■■■□□ 2.64
GPC1-202ENST00000420138 FAM50AQ14320 339 aaKnown RBP31.55■■■□□ 2.64
GPC1-202ENST00000420138 TROQ12816 1431 aaPredicted RBP31.54■■■□□ 2.64
GPC1-202ENST00000420138 CCER1Q8TC90 406 aaPredicted RBP31.53■■■□□ 2.64
GPC1-202ENST00000420138 ZEB1P37275 1124 aaPredicted RBP31.52■■■□□ 2.64
GPC1-202ENST00000420138 ITGAEP38570 1179 aa31.51■■■□□ 2.63
GPC1-202ENST00000420138 UHRF1BP1LA0JNW5 1464 aa31.48■■■□□ 2.63
GPC1-202ENST00000420138 TCOF1Q13428 1488 aaKnown RBP31.44■■■□□ 2.62
GPC1-202ENST00000420138 MIA2Q96PC5 1412 aa31.43■■■□□ 2.62
GPC1-202ENST00000420138 ADCY10Q96PN6 1610 aa31.43■■■□□ 2.62
GPC1-202ENST00000420138 PTPN23Q9H3S7 1636 aa31.42■■■□□ 2.62
GPC1-202ENST00000420138 ZCCHC11Q5TAX3 1644 aaKnown RBP31.4■■■□□ 2.62
GPC1-202ENST00000420138 RIMBP3CA6NJZ7 1639 aa31.39■■■□□ 2.62
GPC1-202ENST00000420138 RIMBP3BA6NNM3 1639 aa31.39■■■□□ 2.62
GPC1-202ENST00000420138 RIMBP3Q9UFD9 1639 aa31.39■■■□□ 2.62
GPC1-202ENST00000420138 PLEKHD1A6NEE1 506 aa31.39■■■□□ 2.62
GPC1-202ENST00000420138 KIF14Q15058 1648 aa31.38■■■□□ 2.61
GPC1-202ENST00000420138 PTPRKQ15262 1439 aa31.37■■■□□ 2.61
GPC1-202ENST00000420138 KDM5BQ9UGL1 1544 aa31.35■■■□□ 2.61
GPC1-202ENST00000420138 GPATCH8Q9UKJ3 1502 aaKnown RBP31.31■■■□□ 2.6
GPC1-202ENST00000420138 ABCC10Q5T3U5 1492 aa31.3■■■□□ 2.6
GPC1-202ENST00000420138 SETD5Q9C0A6 1442 aa31.29■■■□□ 2.6
GPC1-202ENST00000420138 RAB3GAP2Q9H2M9 1393 aa31.28■■■□□ 2.6
GPC1-202ENST00000420138 DHX57Q6P158 1386 aaKnown RBP31.25■■■□□ 2.59
GPC1-202ENST00000420138 ZNF644Q9H582 1327 aaPredicted RBP31.21■■■□□ 2.59
GPC1-202ENST00000420138 ITSN2Q9NZM3 1697 aa31.2■■■□□ 2.58
GPC1-202ENST00000420138 CFDP1Q9UEE9 299 aaPredicted RBP31.18■■■□□ 2.58
GPC1-202ENST00000420138 HFM1A2PYH4 1435 aa31.17■■■□□ 2.58
GPC1-202ENST00000420138 CYB5RLQ6IPT4 315 aa31.16■■■□□ 2.58
GPC1-202ENST00000420138 CDC42BPAQ5VT25 1732 aa31.13■■■□□ 2.57
GPC1-202ENST00000420138 CAMSAP2Q08AD1 1489 aa31.13■■■□□ 2.57
GPC1-202ENST00000420138 NPM1P06748 294 aaKnown RBP eCLIP31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms