RNA–Protein interactions for RNA: ENST00000420138.5

GPC1-202, Transcript of glypican 1, humanhuman

TSL 5 BASIC

Gene GPC1, Length 1,835 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-202ENST00000420138 NISCHQ9Y2I1 1504 aa47.51■■■■■ 5.2
GPC1-202ENST00000420138 CCDC180Q9P1Z9 1646 aa41.58■■■■■ 4.25
GPC1-202ENST00000420138 ZCCHC6Q5VYS8 1495 aaKnown RBP39.94■■■■□ 3.98
GPC1-202ENST00000420138 ABCC9O60706 1549 aa39.56■■■■□ 3.92
GPC1-202ENST00000420138 DCAF1Q9Y4B6 1507 aa39.27■■■■□ 3.88
GPC1-202ENST00000420138 DCAF8L2P0C7V8 631 aa39.21■■■■□ 3.87
GPC1-202ENST00000420138 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
GPC1-202ENST00000420138 SHROOM4Q9ULL8 1493 aa38.81■■■■□ 3.8
GPC1-202ENST00000420138 NACADO15069 1562 aa38.75■■■■□ 3.79
GPC1-202ENST00000420138 RB1CC1Q8TDY2 1594 aa38.53■■■■□ 3.76
GPC1-202ENST00000420138 SCRIBQ14160 1630 aa38.14■■■■□ 3.7
GPC1-202ENST00000420138 UNC13AQ9UPW8 1703 aa37.83■■■■□ 3.65
GPC1-202ENST00000420138 SUPT5HO00267 1087 aaKnown RBP37.35■■■■□ 3.57
GPC1-202ENST00000420138 BICRAQ9NZM4 1560 aa37.34■■■■□ 3.57
GPC1-202ENST00000420138 PABPN1Q86U42 306 aaKnown RBP eCLIP37.17■■■■□ 3.54
GPC1-202ENST00000420138 CECR2Q9BXF3 1484 aa36.98■■■■□ 3.51
GPC1-202ENST00000420138 RSF1Q96T23 1441 aaPredicted RBP36.93■■■■□ 3.5
GPC1-202ENST00000420138 MROH2BQ7Z745 1585 aa36.74■■■■□ 3.47
GPC1-202ENST00000420138 BAZ1AQ9NRL2 1556 aaPredicted RBP36.64■■■■□ 3.46
GPC1-202ENST00000420138 SMARCA4P51532 1647 aa36.53■■■■□ 3.44
GPC1-202ENST00000420138 WIZO95785 1651 aa36.4■■■■□ 3.42
GPC1-202ENST00000420138 EIF4G1Q04637 1599 aaKnown RBP36.26■■■■□ 3.4
GPC1-202ENST00000420138 PEG3Q9GZU2 1588 aa36.09■■■■□ 3.37
GPC1-202ENST00000420138 TOP2AP11388 1531 aaKnown RBP36.01■■■■□ 3.36
GPC1-202ENST00000420138 SMARCA2P51531 1590 aa35.99■■■■□ 3.35
GPC1-202ENST00000420138 ATAD2BQ9ULI0 1458 aa35.96■■■■□ 3.35
GPC1-202ENST00000420138 CHIC1Q5VXU3 224 aa35.85■■■■□ 3.33
GPC1-202ENST00000420138 CC2D2AQ9P2K1 1620 aa35.84■■■■□ 3.33
GPC1-202ENST00000420138 BAZ1BQ9UIG0 1483 aaKnown RBP35.78■■■■□ 3.32
GPC1-202ENST00000420138 NCAPD3P42695 1498 aa35.71■■■■□ 3.31
GPC1-202ENST00000420138 CCDC88BA6NC98 1476 aa35.69■■■■□ 3.3
GPC1-202ENST00000420138 HMGXB3Q12766 1538 aa35.69■■■■□ 3.3
GPC1-202ENST00000420138 DNAJC5BQ9UF47 199 aa35.14■■■■□ 3.22
GPC1-202ENST00000420138 TRIM41Q8WV44 630 aa35.09■■■■□ 3.21
GPC1-202ENST00000420138 ABCC8Q09428 1581 aa34.95■■■■□ 3.18
GPC1-202ENST00000420138 CFTRP13569 1480 aa34.83■■■■□ 3.17
GPC1-202ENST00000420138 PRDM2Q13029 1718 aa34.8■■■■□ 3.16
GPC1-202ENST00000420138 CADPSQ9ULU8 1353 aa34.76■■■■□ 3.16
GPC1-202ENST00000420138 WRNQ14191 1432 aaPredicted RBP eCLIP34.71■■■■□ 3.15
GPC1-202ENST00000420138 LAMC3Q9Y6N6 1575 aa34.63■■■■□ 3.14
GPC1-202ENST00000420138 NESP48681 1621 aa34.61■■■■□ 3.13
GPC1-202ENST00000420138 SYNJ1O43426 1573 aa34.57■■■■□ 3.13
GPC1-202ENST00000420138 LOC105371045A0A1W2PR82 267 aa34.49■■■■□ 3.11
GPC1-202ENST00000420138 FAM9AQ8IZU1 332 aaPredicted RBP34.48■■■■□ 3.11
GPC1-202ENST00000420138 FANCD2Q9BXW9 1451 aa34.41■■■■□ 3.1
GPC1-202ENST00000420138 TOP2BQ02880 1626 aa34.4■■■■□ 3.1
GPC1-202ENST00000420138 SOGA1O94964 1423 aa34.35■■■■□ 3.09
GPC1-202ENST00000420138 BIVM-ERCC5R4GMW8 1640 aa34.34■■■■□ 3.09
GPC1-202ENST00000420138 CUX1P39880 1505 aa34.33■■■■□ 3.09
GPC1-202ENST00000420138 PDS5BQ9NTI5 1447 aa34.32■■■■□ 3.09
GPC1-202ENST00000420138 KIF21AQ7Z4S6 1674 aa34.3■■■■□ 3.08
GPC1-202ENST00000420138 CEP164Q9UPV0 1460 aa34.26■■■■□ 3.07
GPC1-202ENST00000420138 RUSC2Q8N2Y8 1516 aa34.23■■■■□ 3.07
GPC1-202ENST00000420138 EEA1Q15075 1411 aa34.19■■■■□ 3.06
GPC1-202ENST00000420138 DNMBPQ6XZF7 1577 aa34.07■■■■□ 3.04
GPC1-202ENST00000420138 CSRNP3Q8WYN3 585 aa34.06■■■■□ 3.04
GPC1-202ENST00000420138 TOPBP1Q92547 1522 aa34.01■■■■□ 3.03
GPC1-202ENST00000420138 URB2Q14146 1524 aaKnown RBP34■■■■□ 3.03
GPC1-202ENST00000420138 EHMT2Q96KQ7 1210 aa33.99■■■■□ 3.03
GPC1-202ENST00000420138 ERCC6Q03468 1493 aa33.98■■■■□ 3.03
GPC1-202ENST00000420138 FGD5Q6ZNL6 1462 aa33.93■■■■□ 3.02
GPC1-202ENST00000420138 MRC2Q9UBG0 1479 aa33.92■■■■□ 3.02
GPC1-202ENST00000420138 POLA1P09884 1462 aaPredicted RBP33.81■■■■□ 3
GPC1-202ENST00000420138 KIF27Q86VH2 1401 aa33.79■■■■□ 3
GPC1-202ENST00000420138 THOC2Q8NI27 1593 aaKnown RBP33.78■■■■□ 3
GPC1-202ENST00000420138 WDR62O43379 1518 aa33.78■■■■□ 3
GPC1-202ENST00000420138 KIF21BO75037 1637 aa33.76■■■□□ 2.99
GPC1-202ENST00000420138 GOLGA3Q08378 1498 aa33.74■■■□□ 2.99
GPC1-202ENST00000420138 CUX2O14529 1486 aa33.71■■■□□ 2.99
GPC1-202ENST00000420138 TNIKQ9UKE5 1360 aa33.69■■■□□ 2.98
GPC1-202ENST00000420138 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
GPC1-202ENST00000420138 PRXQ9BXM0 1461 aa33.65■■■□□ 2.98
GPC1-202ENST00000420138 ABCA10Q8WWZ4 1543 aa33.63■■■□□ 2.97
GPC1-202ENST00000420138 RAPGEF2Q9Y4G8 1499 aa33.63■■■□□ 2.97
GPC1-202ENST00000420138 WDR97A6NE52 1622 aa33.61■■■□□ 2.97
GPC1-202ENST00000420138 UBTFP17480 764 aaKnown RBP33.57■■■□□ 2.96
GPC1-202ENST00000420138 IGF1RP08069 1367 aa33.56■■■□□ 2.96
GPC1-202ENST00000420138 TARBP1Q13395 1621 aaKnown RBP33.56■■■□□ 2.96
GPC1-202ENST00000420138 ERICH3Q5RHP9 1530 aa33.53■■■□□ 2.96
GPC1-202ENST00000420138 CEP162Q5TB80 1403 aa33.5■■■□□ 2.95
GPC1-202ENST00000420138 IFT140Q96RY7 1462 aa33.44■■■□□ 2.94
GPC1-202ENST00000420138 ABCA5Q8WWZ7 1642 aa33.42■■■□□ 2.94
GPC1-202ENST00000420138 TDRD9Q8NDG6 1382 aaKnown RBP33.36■■■□□ 2.93
GPC1-202ENST00000420138 CARMIL1Q5VZK9 1371 aa33.35■■■□□ 2.93
GPC1-202ENST00000420138 GAPVD1Q14C86 1478 aa33.32■■■□□ 2.92
GPC1-202ENST00000420138 PBRM1Q86U86 1689 aa33.26■■■□□ 2.92
GPC1-202ENST00000420138 ZNF608Q9ULD9 1512 aaPredicted RBP33.25■■■□□ 2.91
GPC1-202ENST00000420138 AQRO60306 1485 aaKnown RBP eCLIP33.23■■■□□ 2.91
GPC1-202ENST00000420138 CLIP1P30622 1438 aa33.22■■■□□ 2.91
GPC1-202ENST00000420138 CUL7Q14999 1698 aa33.22■■■□□ 2.91
GPC1-202ENST00000420138 EIF4G3O43432 1585 aaKnown RBP33.22■■■□□ 2.91
GPC1-202ENST00000420138 GRIN2BQ13224 1484 aa33.11■■■□□ 2.89
GPC1-202ENST00000420138 RANGAP1P46060 587 aaPredicted RBP33.02■■■□□ 2.88
GPC1-202ENST00000420138 ADAMTS12P58397 1594 aa32.99■■■□□ 2.87
GPC1-202ENST00000420138 VPS8Q8N3P4 1428 aa32.95■■■□□ 2.87
GPC1-202ENST00000420138 SNAPC4Q5SXM2 1469 aa32.94■■■□□ 2.86
GPC1-202ENST00000420138 ARAP1Q96P48 1450 aa32.94■■■□□ 2.86
GPC1-202ENST00000420138 FHAD1B1AJZ9 1412 aa32.94■■■□□ 2.86
GPC1-202ENST00000420138 ARHGAP35Q9NRY4 1499 aa32.92■■■□□ 2.86
GPC1-202ENST00000420138 PCGF6Q9BYE7 350 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms