RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 MAGI1Q96QZ7 1491 aaPredicted RBP20.87■□□□□ 0.93
LIMS1-205ENST00000410093 CUL7Q14999 1698 aa20.83■□□□□ 0.93
LIMS1-205ENST00000410093 APLP2Q06481 763 aa20.82■□□□□ 0.92
LIMS1-205ENST00000410093 CARMIL1Q5VZK9 1371 aa20.81■□□□□ 0.92
LIMS1-205ENST00000410093 SYNJ2O15056 1496 aa20.79■□□□□ 0.92
LIMS1-205ENST00000410093 PBRM1Q86U86 1689 aa20.78■□□□□ 0.92
LIMS1-205ENST00000410093 RIMBP3CA6NJZ7 1639 aa20.78■□□□□ 0.92
LIMS1-205ENST00000410093 RIMBP3BA6NNM3 1639 aa20.78■□□□□ 0.92
LIMS1-205ENST00000410093 RIMBP3Q9UFD9 1639 aa20.78■□□□□ 0.92
LIMS1-205ENST00000410093 ABCA5Q8WWZ7 1642 aa20.77■□□□□ 0.92
LIMS1-205ENST00000410093 ARHGEF11O15085 1522 aa20.77■□□□□ 0.92
LIMS1-205ENST00000410093 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
LIMS1-205ENST00000410093 PPARGC1BQ86YN6 1023 aaKnown RBP20.75■□□□□ 0.91
LIMS1-205ENST00000410093 CYB5RLQ6IPT4 315 aa20.7■□□□□ 0.9
LIMS1-205ENST00000410093 ARHGAP35Q9NRY4 1499 aa20.68■□□□□ 0.9
LIMS1-205ENST00000410093 MAP3K1Q13233 1512 aa20.66■□□□□ 0.9
LIMS1-205ENST00000410093 CLASP1Q7Z460 1538 aa20.64■□□□□ 0.89
LIMS1-205ENST00000410093 EFCAB5A4FU69 1503 aa20.63■□□□□ 0.89
LIMS1-205ENST00000410093 CTTNBP2Q8WZ74 1663 aa20.63■□□□□ 0.89
LIMS1-205ENST00000410093 FHAD1B1AJZ9 1412 aa20.63■□□□□ 0.89
LIMS1-205ENST00000410093 GRIN2AQ12879 1464 aa20.62■□□□□ 0.89
LIMS1-205ENST00000410093 ADAMTS12P58397 1594 aa20.61■□□□□ 0.89
LIMS1-205ENST00000410093 RANGAP1P46060 587 aaPredicted RBP20.53■□□□□ 0.88
LIMS1-205ENST00000410093 CCER1Q8TC90 406 aaPredicted RBP20.53■□□□□ 0.88
LIMS1-205ENST00000410093 NUP160Q12769 1436 aa20.51■□□□□ 0.87
LIMS1-205ENST00000410093 CEP170Q5SW79 1584 aa20.48■□□□□ 0.87
LIMS1-205ENST00000410093 TTBK1Q5TCY1 1321 aaPredicted RBP20.47■□□□□ 0.87
LIMS1-205ENST00000410093 TIAM1Q13009 1591 aa20.47■□□□□ 0.87
LIMS1-205ENST00000410093 RRBP1Q9P2E9 1410 aaKnown RBP20.45■□□□□ 0.86
LIMS1-205ENST00000410093 CFAP43Q8NDM7 1665 aa20.44■□□□□ 0.86
LIMS1-205ENST00000410093 FYCO1Q9BQS8 1478 aa20.44■□□□□ 0.86
LIMS1-205ENST00000410093 TRHP20396 242 aaPredicted RBP20.43■□□□□ 0.86
LIMS1-205ENST00000410093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.43■□□□□ 0.86
LIMS1-205ENST00000410093 FMN1Q68DA7 1419 aa20.42■□□□□ 0.86
LIMS1-205ENST00000410093 SAMD9Q5K651 1589 aa20.41■□□□□ 0.86
LIMS1-205ENST00000410093 JPH4Q96JJ6 628 aa20.41■□□□□ 0.86
LIMS1-205ENST00000410093 CASKIN1Q8WXD9 1431 aa20.39■□□□□ 0.85
LIMS1-205ENST00000410093 PCF11O94913 1555 aaKnown RBP20.36■□□□□ 0.85
LIMS1-205ENST00000410093 LRRC9Q6ZRR7 1453 aa20.36■□□□□ 0.85
LIMS1-205ENST00000410093 KANK4Q5T7N3 995 aaPredicted RBP20.36■□□□□ 0.85
LIMS1-205ENST00000410093 PRG4Q92954 1404 aaPredicted RBP20.35■□□□□ 0.85
LIMS1-205ENST00000410093 SHROOM2Q13796 1616 aa20.34■□□□□ 0.85
LIMS1-205ENST00000410093 ERCC6L2Q5T890 1561 aa20.32■□□□□ 0.84
LIMS1-205ENST00000410093 CLSPNQ9HAW4 1339 aa20.31■□□□□ 0.84
LIMS1-205ENST00000410093 CCNB3Q8WWL7 1395 aa20.31■□□□□ 0.84
LIMS1-205ENST00000410093 KIAA0586Q9BVV6 1533 aa20.3■□□□□ 0.84
LIMS1-205ENST00000410093 FHOD3Q2V2M9 1422 aa20.29■□□□□ 0.84
LIMS1-205ENST00000410093 HNRNPUL2Q1KMD3 747 aaKnown RBP20.28■□□□□ 0.84
LIMS1-205ENST00000410093 IQGAP2Q13576 1575 aa20.26■□□□□ 0.83
LIMS1-205ENST00000410093 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.24■□□□□ 0.83
LIMS1-205ENST00000410093 UGGT2Q9NYU1 1516 aa20.2■□□□□ 0.82
LIMS1-205ENST00000410093 CCDC18Q5T9S5 1454 aa20.19■□□□□ 0.82
LIMS1-205ENST00000410093 NPM1P06748 294 aaKnown RBP eCLIP20.19■□□□□ 0.82
LIMS1-205ENST00000410093 CARMIL2Q6F5E8 1435 aa20.17■□□□□ 0.82
LIMS1-205ENST00000410093 P3H3Q8IVL6 736 aa20.17■□□□□ 0.82
LIMS1-205ENST00000410093 HECW1Q76N89 1606 aa20.15■□□□□ 0.82
LIMS1-205ENST00000410093 EHBP1L1Q8N3D4 1523 aa20.12■□□□□ 0.81
LIMS1-205ENST00000410093 PHLDB1Q86UU1 1377 aa20.1■□□□□ 0.81
LIMS1-205ENST00000410093 SUPT6HQ7KZ85 1726 aaKnown RBP20.1■□□□□ 0.81
LIMS1-205ENST00000410093 PTPRGP23470 1445 aa20.1■□□□□ 0.81
LIMS1-205ENST00000410093 LRRIQ1Q96JM4 1722 aa20.09■□□□□ 0.81
LIMS1-205ENST00000410093 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.8
LIMS1-205ENST00000410093 ATP1B4Q9UN42 357 aaPredicted RBP20.07■□□□□ 0.8
LIMS1-205ENST00000410093 DHX57Q6P158 1386 aaKnown RBP20.06■□□□□ 0.8
LIMS1-205ENST00000410093 KIAA0556O60303 1618 aa20.03■□□□□ 0.8
LIMS1-205ENST00000410093 FGD6Q6ZV73 1430 aa20.02■□□□□ 0.8
LIMS1-205ENST00000410093 SETD5Q9C0A6 1442 aa20.02■□□□□ 0.8
LIMS1-205ENST00000410093 ADCY10Q96PN6 1610 aa19.99■□□□□ 0.79
LIMS1-205ENST00000410093 EPRSP07814 1512 aaKnown RBP19.98■□□□□ 0.79
LIMS1-205ENST00000410093 MYOM3Q5VTT5 1437 aa19.98■□□□□ 0.79
LIMS1-205ENST00000410093 NCOA2Q15596 1464 aa19.98■□□□□ 0.79
LIMS1-205ENST00000410093 DISP1Q96F81 1524 aa19.97■□□□□ 0.79
LIMS1-205ENST00000410093 FAM69CQ0P6D2 419 aa19.97■□□□□ 0.79
LIMS1-205ENST00000410093 RAB3GAP2Q9H2M9 1393 aa19.96■□□□□ 0.79
LIMS1-205ENST00000410093 MAPKBP1O60336 1514 aa19.94■□□□□ 0.78
LIMS1-205ENST00000410093 ZNF316A6NFI3 1004 aaPredicted RBP19.94■□□□□ 0.78
LIMS1-205ENST00000410093 FAM50AQ14320 339 aaKnown RBP19.94■□□□□ 0.78
LIMS1-205ENST00000410093 UACAQ9BZF9 1416 aa19.93■□□□□ 0.78
LIMS1-205ENST00000410093 RAPGEF6Q8TEU7 1601 aa19.92■□□□□ 0.78
LIMS1-205ENST00000410093 ABCC10Q5T3U5 1492 aa19.91■□□□□ 0.78
LIMS1-205ENST00000410093 MIA2Q96PC5 1412 aa19.91■□□□□ 0.78
LIMS1-205ENST00000410093 ABCC2Q92887 1545 aa19.9■□□□□ 0.78
LIMS1-205ENST00000410093 TCOF1Q13428 1488 aaKnown RBP19.9■□□□□ 0.78
LIMS1-205ENST00000410093 ACIN1Q9UKV3 1341 aaKnown RBP19.9■□□□□ 0.78
LIMS1-205ENST00000410093 PTPN23Q9H3S7 1636 aa19.89■□□□□ 0.77
LIMS1-205ENST00000410093 UHRF1BP1LA0JNW5 1464 aa19.89■□□□□ 0.77
LIMS1-205ENST00000410093 ITGAEP38570 1179 aa19.87■□□□□ 0.77
LIMS1-205ENST00000410093 MAGI3Q5TCQ9 1506 aa19.87■□□□□ 0.77
LIMS1-205ENST00000410093 CDK11AQ9UQ88 783 aaPredicted RBP19.86■□□□□ 0.77
LIMS1-205ENST00000410093 KIF13AQ9H1H9 1805 aa19.86■□□□□ 0.77
LIMS1-205ENST00000410093 DIEXFQ68CQ4 756 aaKnown RBP19.85■□□□□ 0.77
LIMS1-205ENST00000410093 TIMELESSQ9UNS1 1208 aa19.85■□□□□ 0.77
LIMS1-205ENST00000410093 HFM1A2PYH4 1435 aa19.85■□□□□ 0.77
LIMS1-205ENST00000410093 AKNAQ7Z591 1439 aa19.83■□□□□ 0.77
LIMS1-205ENST00000410093 PLB1Q6P1J6 1458 aa19.83■□□□□ 0.77
LIMS1-205ENST00000410093 DIP2BQ9P265 1576 aa19.82■□□□□ 0.76
LIMS1-205ENST00000410093 NUP153P49790 1475 aaKnown RBP19.82■□□□□ 0.76
LIMS1-205ENST00000410093 ASXL2Q76L83 1435 aa19.82■□□□□ 0.76
LIMS1-205ENST00000410093 CDK13Q14004 1512 aaKnown RBP19.8■□□□□ 0.76
LIMS1-205ENST00000410093 KDM5BQ9UGL1 1544 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms