RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
LIMS1-205ENST00000410093 CCDC180Q9P1Z9 1646 aa26.03■■□□□ 1.76
LIMS1-205ENST00000410093 ABCC9O60706 1549 aa25.77■■□□□ 1.72
LIMS1-205ENST00000410093 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.59
LIMS1-205ENST00000410093 DCAF8L2P0C7V8 631 aa24.7■■□□□ 1.54
LIMS1-205ENST00000410093 RB1CC1Q8TDY2 1594 aa24.68■■□□□ 1.54
LIMS1-205ENST00000410093 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
LIMS1-205ENST00000410093 NACADO15069 1562 aa24.58■■□□□ 1.52
LIMS1-205ENST00000410093 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
LIMS1-205ENST00000410093 SHROOM4Q9ULL8 1493 aa24.2■■□□□ 1.46
LIMS1-205ENST00000410093 PABPN1Q86U42 306 aaKnown RBP eCLIP24.09■■□□□ 1.45
LIMS1-205ENST00000410093 UNC13AQ9UPW8 1703 aa24■■□□□ 1.43
LIMS1-205ENST00000410093 BICRAQ9NZM4 1560 aa23.83■■□□□ 1.41
LIMS1-205ENST00000410093 DNAJC5BQ9UF47 199 aa23.83■■□□□ 1.41
LIMS1-205ENST00000410093 SCRIBQ14160 1630 aa23.77■■□□□ 1.4
LIMS1-205ENST00000410093 SUPT5HO00267 1087 aaKnown RBP23.57■■□□□ 1.36
LIMS1-205ENST00000410093 EIF4G1Q04637 1599 aaKnown RBP23.3■■□□□ 1.32
LIMS1-205ENST00000410093 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
LIMS1-205ENST00000410093 CECR2Q9BXF3 1484 aa23.19■■□□□ 1.3
LIMS1-205ENST00000410093 RSF1Q96T23 1441 aaPredicted RBP23.07■■□□□ 1.28
LIMS1-205ENST00000410093 CHIC1Q5VXU3 224 aa22.9■■□□□ 1.26
LIMS1-205ENST00000410093 BAZ1AQ9NRL2 1556 aaPredicted RBP22.86■■□□□ 1.25
LIMS1-205ENST00000410093 MROH2BQ7Z745 1585 aa22.78■■□□□ 1.24
LIMS1-205ENST00000410093 SMARCA4P51532 1647 aa22.68■■□□□ 1.22
LIMS1-205ENST00000410093 NCAPD3P42695 1498 aa22.67■■□□□ 1.22
LIMS1-205ENST00000410093 ATAD2BQ9ULI0 1458 aa22.64■■□□□ 1.22
LIMS1-205ENST00000410093 SMARCA2P51531 1590 aa22.64■■□□□ 1.21
LIMS1-205ENST00000410093 WIZO95785 1651 aa22.64■■□□□ 1.21
LIMS1-205ENST00000410093 HMGXB3Q12766 1538 aa22.52■■□□□ 1.2
LIMS1-205ENST00000410093 TOP2AP11388 1531 aaKnown RBP22.52■■□□□ 1.19
LIMS1-205ENST00000410093 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
LIMS1-205ENST00000410093 PEG3Q9GZU2 1588 aa22.44■■□□□ 1.18
LIMS1-205ENST00000410093 ERCC6Q03468 1493 aa22.31■■□□□ 1.16
LIMS1-205ENST00000410093 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
LIMS1-205ENST00000410093 CCDC88BA6NC98 1476 aa22.22■■□□□ 1.15
LIMS1-205ENST00000410093 NESP48681 1621 aa22.19■■□□□ 1.14
LIMS1-205ENST00000410093 LAMC3Q9Y6N6 1575 aa22.13■■□□□ 1.13
LIMS1-205ENST00000410093 CUX2O14529 1486 aa22.09■■□□□ 1.13
LIMS1-205ENST00000410093 PDS5BQ9NTI5 1447 aa22.06■■□□□ 1.12
LIMS1-205ENST00000410093 CADPSQ9ULU8 1353 aa22.04■■□□□ 1.12
LIMS1-205ENST00000410093 LOC105371045A0A1W2PR82 267 aa21.92■■□□□ 1.1
LIMS1-205ENST00000410093 KIF21AQ7Z4S6 1674 aa21.89■■□□□ 1.1
LIMS1-205ENST00000410093 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
LIMS1-205ENST00000410093 EEA1Q15075 1411 aa21.84■■□□□ 1.09
LIMS1-205ENST00000410093 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
LIMS1-205ENST00000410093 CFTRP13569 1480 aa21.82■■□□□ 1.08
LIMS1-205ENST00000410093 MRC2Q9UBG0 1479 aa21.79■■□□□ 1.08
LIMS1-205ENST00000410093 CEP164Q9UPV0 1460 aa21.79■■□□□ 1.08
LIMS1-205ENST00000410093 FANCD2Q9BXW9 1451 aa21.78■■□□□ 1.08
LIMS1-205ENST00000410093 WRNQ14191 1432 aaPredicted RBP eCLIP21.74■■□□□ 1.07
LIMS1-205ENST00000410093 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
LIMS1-205ENST00000410093 AEBP2Q6ZN18 517 aaPredicted RBP21.7■■□□□ 1.06
LIMS1-205ENST00000410093 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
LIMS1-205ENST00000410093 WDR62O43379 1518 aa21.68■■□□□ 1.06
LIMS1-205ENST00000410093 PRDM2Q13029 1718 aa21.59■■□□□ 1.05
LIMS1-205ENST00000410093 SYNJ1O43426 1573 aa21.58■■□□□ 1.04
LIMS1-205ENST00000410093 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
LIMS1-205ENST00000410093 BIVM-ERCC5R4GMW8 1640 aa21.56■■□□□ 1.04
LIMS1-205ENST00000410093 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
LIMS1-205ENST00000410093 TRIM26Q12899 539 aaPredicted RBP21.52■■□□□ 1.04
LIMS1-205ENST00000410093 SOGA1O94964 1423 aa21.51■■□□□ 1.03
LIMS1-205ENST00000410093 CSRNP3Q8WYN3 585 aa21.5■■□□□ 1.03
LIMS1-205ENST00000410093 PCGF6Q9BYE7 350 aa21.48■■□□□ 1.03
LIMS1-205ENST00000410093 TNIKQ9UKE5 1360 aa21.47■■□□□ 1.03
LIMS1-205ENST00000410093 KIF21BO75037 1637 aa21.46■■□□□ 1.03
LIMS1-205ENST00000410093 GOLGA3Q08378 1498 aa21.44■■□□□ 1.02
LIMS1-205ENST00000410093 TOPBP1Q92547 1522 aa21.38■■□□□ 1.01
LIMS1-205ENST00000410093 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
LIMS1-205ENST00000410093 HRCP23327 699 aa21.34■■□□□ 1.01
LIMS1-205ENST00000410093 IFT140Q96RY7 1462 aa21.33■■□□□ 1.01
LIMS1-205ENST00000410093 DNMBPQ6XZF7 1577 aa21.33■■□□□ 1
LIMS1-205ENST00000410093 CEP162Q5TB80 1403 aa21.31■■□□□ 1
LIMS1-205ENST00000410093 CUX1P39880 1505 aa21.29■■□□□ 1
LIMS1-205ENST00000410093 ERICH3Q5RHP9 1530 aa21.25■□□□□ 0.99
LIMS1-205ENST00000410093 OSCARQ8IYS5 282 aa21.23■□□□□ 0.99
LIMS1-205ENST00000410093 EHMT2Q96KQ7 1210 aa21.23■□□□□ 0.99
LIMS1-205ENST00000410093 UBTFP17480 764 aaKnown RBP21.22■□□□□ 0.99
LIMS1-205ENST00000410093 ZNF608Q9ULD9 1512 aaPredicted RBP21.21■□□□□ 0.99
LIMS1-205ENST00000410093 KIF27Q86VH2 1401 aa21.2■□□□□ 0.98
LIMS1-205ENST00000410093 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
LIMS1-205ENST00000410093 PRXQ9BXM0 1461 aa21.14■□□□□ 0.97
LIMS1-205ENST00000410093 EIF4G3O43432 1585 aaKnown RBP21.11■□□□□ 0.97
LIMS1-205ENST00000410093 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
LIMS1-205ENST00000410093 AQRO60306 1485 aaKnown RBP eCLIP21.1■□□□□ 0.97
LIMS1-205ENST00000410093 FGD5Q6ZNL6 1462 aa21.1■□□□□ 0.97
LIMS1-205ENST00000410093 RAD54L2Q9Y4B4 1467 aa21.1■□□□□ 0.97
LIMS1-205ENST00000410093 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
LIMS1-205ENST00000410093 ZEB1P37275 1124 aaPredicted RBP21.06■□□□□ 0.96
LIMS1-205ENST00000410093 CLIP1P30622 1438 aa21.06■□□□□ 0.96
LIMS1-205ENST00000410093 TDRD9Q8NDG6 1382 aaKnown RBP21.05■□□□□ 0.96
LIMS1-205ENST00000410093 FBLN2P98095 1184 aa21.04■□□□□ 0.96
LIMS1-205ENST00000410093 VPS8Q8N3P4 1428 aa20.98■□□□□ 0.95
LIMS1-205ENST00000410093 WDR97A6NE52 1622 aa20.98■□□□□ 0.95
LIMS1-205ENST00000410093 CHMP7Q8WUX9 453 aaPredicted RBP20.92■□□□□ 0.94
LIMS1-205ENST00000410093 GRIN2BQ13224 1484 aa20.91■□□□□ 0.94
LIMS1-205ENST00000410093 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
LIMS1-205ENST00000410093 SNAPC4Q5SXM2 1469 aa20.89■□□□□ 0.94
LIMS1-205ENST00000410093 IGF1RP08069 1367 aa20.89■□□□□ 0.93
LIMS1-205ENST00000410093 CHD1O14646 1710 aa20.88■□□□□ 0.93
LIMS1-205ENST00000410093 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms