RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 FMN1Q68DA7 1419 aa11.93□□□□□ -0.5
PTPRD-204ENST00000397606 JPH4Q96JJ6 628 aa11.93□□□□□ -0.5
PTPRD-204ENST00000397606 TOP2BQ02880 1626 aa11.93□□□□□ -0.5
PTPRD-204ENST00000397606 AQRO60306 1485 aaKnown RBP eCLIP11.92□□□□□ -0.5
PTPRD-204ENST00000397606 CUX1P39880 1505 aa11.92□□□□□ -0.5
PTPRD-204ENST00000397606 VPS8Q8N3P4 1428 aa11.92□□□□□ -0.5
PTPRD-204ENST00000397606 POLA1P09884 1462 aaPredicted RBP11.91□□□□□ -0.5
PTPRD-204ENST00000397606 GRIN2BQ13224 1484 aa11.91□□□□□ -0.5
PTPRD-204ENST00000397606 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
PTPRD-204ENST00000397606 CFDP1Q9UEE9 299 aaPredicted RBP11.89□□□□□ -0.51
PTPRD-204ENST00000397606 OSCARQ8IYS5 282 aa11.88□□□□□ -0.51
PTPRD-204ENST00000397606 CHIC2Q9UKJ5 165 aa11.88□□□□□ -0.51
PTPRD-204ENST00000397606 ESF1Q9H501 851 aaKnown RBP11.87□□□□□ -0.51
PTPRD-204ENST00000397606 FHOD3Q2V2M9 1422 aa11.83□□□□□ -0.52
PTPRD-204ENST00000397606 CCNB3Q8WWL7 1395 aa11.83□□□□□ -0.52
PTPRD-204ENST00000397606 ACIN1Q9UKV3 1341 aaKnown RBP11.81□□□□□ -0.52
PTPRD-204ENST00000397606 POLR3GLQ9BT43 218 aa11.81□□□□□ -0.52
PTPRD-204ENST00000397606 ABCA10Q8WWZ4 1543 aa11.81□□□□□ -0.52
PTPRD-204ENST00000397606 PTPRGP23470 1445 aa11.79□□□□□ -0.52
PTPRD-204ENST00000397606 URB2Q14146 1524 aaKnown RBP11.79□□□□□ -0.52
PTPRD-204ENST00000397606 ERICH3Q5RHP9 1530 aa11.79□□□□□ -0.52
PTPRD-204ENST00000397606 ZNF326Q5BKZ1 582 aaKnown RBP11.78□□□□□ -0.52
PTPRD-204ENST00000397606 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.77□□□□□ -0.53
PTPRD-204ENST00000397606 RRP7BPQ9NSQ0 103 aa11.77□□□□□ -0.53
PTPRD-204ENST00000397606 KIF21BO75037 1637 aa11.76□□□□□ -0.53
PTPRD-204ENST00000397606 PRXQ9BXM0 1461 aa11.76□□□□□ -0.53
PTPRD-204ENST00000397606 SNAPC4Q5SXM2 1469 aa11.75□□□□□ -0.53
PTPRD-204ENST00000397606 ARHGAP35Q9NRY4 1499 aa11.75□□□□□ -0.53
PTPRD-204ENST00000397606 KANK4Q5T7N3 995 aaPredicted RBP11.74□□□□□ -0.53
PTPRD-204ENST00000397606 TONSLQ96HA7 1378 aa11.71□□□□□ -0.53
PTPRD-204ENST00000397606 BIVM-ERCC5R4GMW8 1640 aa11.71□□□□□ -0.54
PTPRD-204ENST00000397606 CENPBP07199 599 aaPredicted RBP11.71□□□□□ -0.54
PTPRD-204ENST00000397606 TRHP20396 242 aaPredicted RBP11.71□□□□□ -0.54
PTPRD-204ENST00000397606 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.54
PTPRD-204ENST00000397606 CCDC18Q5T9S5 1454 aa11.71□□□□□ -0.54
PTPRD-204ENST00000397606 EFCAB2Q5VUJ9 269 aa11.7□□□□□ -0.54
PTPRD-204ENST00000397606 SLC4A1APQ9BWU0 796 aaKnown RBP11.7□□□□□ -0.54
PTPRD-204ENST00000397606 CHGAP10645 457 aaKnown RBP11.69□□□□□ -0.54
PTPRD-204ENST00000397606 BCANQ96GW7 911 aa11.69□□□□□ -0.54
PTPRD-204ENST00000397606 CYB5RLQ6IPT4 315 aa11.69□□□□□ -0.54
PTPRD-204ENST00000397606 MAGI1Q96QZ7 1491 aaPredicted RBP11.68□□□□□ -0.54
PTPRD-204ENST00000397606 SYNJ2O15056 1496 aa11.66□□□□□ -0.54
PTPRD-204ENST00000397606 PRG4Q92954 1404 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-204ENST00000397606 CUL7Q14999 1698 aa11.65□□□□□ -0.54
PTPRD-204ENST00000397606 KIAA0586Q9BVV6 1533 aa11.65□□□□□ -0.55
PTPRD-204ENST00000397606 ZNF608Q9ULD9 1512 aaPredicted RBP11.64□□□□□ -0.55
PTPRD-204ENST00000397606 EFCAB5A4FU69 1503 aa11.64□□□□□ -0.55
PTPRD-204ENST00000397606 ARID4BQ4LE39 1312 aaPredicted RBP11.64□□□□□ -0.55
PTPRD-204ENST00000397606 RSPH4AQ5TD94 716 aa11.63□□□□□ -0.55
PTPRD-204ENST00000397606 PLPPR3Q6T4P5 718 aa11.63□□□□□ -0.55
PTPRD-204ENST00000397606 PELP1Q8IZL8 1130 aaKnown RBP11.62□□□□□ -0.55
PTPRD-204ENST00000397606 GRIN2AQ12879 1464 aa11.61□□□□□ -0.55
PTPRD-204ENST00000397606 CASKIN1Q8WXD9 1431 aa11.61□□□□□ -0.55
PTPRD-204ENST00000397606 CNGB1Q14028 1251 aaPredicted RBP11.6□□□□□ -0.55
PTPRD-204ENST00000397606 DIEXFQ68CQ4 756 aaKnown RBP11.59□□□□□ -0.55
PTPRD-204ENST00000397606 ZNF316A6NFI3 1004 aaPredicted RBP11.59□□□□□ -0.55
PTPRD-204ENST00000397606 ARAP1Q96P48 1450 aa11.58□□□□□ -0.56
PTPRD-204ENST00000397606 YTHDC1Q96MU7 727 aaKnown RBP11.58□□□□□ -0.56
PTPRD-204ENST00000397606 KIF21AQ7Z4S6 1674 aa11.58□□□□□ -0.56
PTPRD-204ENST00000397606 ANKRD30AQ9BXX3 1397 aa11.57□□□□□ -0.56
PTPRD-204ENST00000397606 KANK1Q14678 1352 aa11.57□□□□□ -0.56
PTPRD-204ENST00000397606 IQGAP2Q13576 1575 aa11.57□□□□□ -0.56
PTPRD-204ENST00000397606 WDR62O43379 1518 aa11.56□□□□□ -0.56
PTPRD-204ENST00000397606 FYCO1Q9BQS8 1478 aa11.56□□□□□ -0.56
PTPRD-204ENST00000397606 SETD5Q9C0A6 1442 aa11.56□□□□□ -0.56
PTPRD-204ENST00000397606 PRDM2Q13029 1718 aa11.55□□□□□ -0.56
PTPRD-204ENST00000397606 HNRNPMP52272 730 aaKnown RBP eCLIP11.55□□□□□ -0.56
PTPRD-204ENST00000397606 CLSPNQ9HAW4 1339 aa11.54□□□□□ -0.56
PTPRD-204ENST00000397606 KDM2AQ9Y2K7 1162 aa11.54□□□□□ -0.56
PTPRD-204ENST00000397606 SPAG9O60271 1321 aaKnown RBP11.54□□□□□ -0.56
PTPRD-204ENST00000397606 ANP32CO43423 234 aa11.51□□□□□ -0.57
PTPRD-204ENST00000397606 LRRC9Q6ZRR7 1453 aa11.51□□□□□ -0.57
PTPRD-204ENST00000397606 PPP1R15AO75807 674 aaPredicted RBP11.5□□□□□ -0.57
PTPRD-204ENST00000397606 GGT6Q6P531 493 aa11.5□□□□□ -0.57
PTPRD-204ENST00000397606 RGL3Q3MIN7 710 aa11.49□□□□□ -0.57
PTPRD-204ENST00000397606 FAM69CQ0P6D2 419 aa11.49□□□□□ -0.57
PTPRD-204ENST00000397606 UACAQ9BZF9 1416 aa11.49□□□□□ -0.57
PTPRD-204ENST00000397606 NEFLP07196 543 aa11.48□□□□□ -0.57
PTPRD-204ENST00000397606 MYOM3Q5VTT5 1437 aa11.48□□□□□ -0.57
PTPRD-204ENST00000397606 MLECQ14165 292 aa11.48□□□□□ -0.57
PTPRD-204ENST00000397606 RAB3GAP2Q9H2M9 1393 aa11.47□□□□□ -0.57
PTPRD-204ENST00000397606 HECW1Q76N89 1606 aa11.47□□□□□ -0.57
PTPRD-204ENST00000397606 NUP155O75694 1391 aa11.46□□□□□ -0.57
PTPRD-204ENST00000397606 KIF3BO15066 747 aa11.46□□□□□ -0.58
PTPRD-204ENST00000397606 FGD6Q6ZV73 1430 aa11.46□□□□□ -0.58
PTPRD-204ENST00000397606 NCOA2Q15596 1464 aa11.45□□□□□ -0.58
PTPRD-204ENST00000397606 TROQ12816 1431 aaPredicted RBP11.45□□□□□ -0.58
PTPRD-204ENST00000397606 PKD2Q13563 968 aa11.45□□□□□ -0.58
PTPRD-204ENST00000397606 TIMELESSQ9UNS1 1208 aa11.45□□□□□ -0.58
PTPRD-204ENST00000397606 EIF4G3O43432 1585 aaKnown RBP11.44□□□□□ -0.58
PTPRD-204ENST00000397606 EIF4G2P78344 907 aaKnown RBP eCLIP11.44□□□□□ -0.58
PTPRD-204ENST00000397606 PHLDB1Q86UU1 1377 aa11.43□□□□□ -0.58
PTPRD-204ENST00000397606 SIN3AQ96ST3 1273 aa11.43□□□□□ -0.58
PTPRD-204ENST00000397606 MPHOSPH9Q99550 1183 aa11.43□□□□□ -0.58
PTPRD-204ENST00000397606 ADAMTS12P58397 1594 aa11.43□□□□□ -0.58
PTPRD-204ENST00000397606 EHBP1L1Q8N3D4 1523 aa11.43□□□□□ -0.58
PTPRD-204ENST00000397606 WDR97A6NE52 1622 aa11.42□□□□□ -0.58
PTPRD-204ENST00000397606 EPRSP07814 1512 aaKnown RBP11.41□□□□□ -0.58
PTPRD-204ENST00000397606 HDGFP51858 240 aaKnown RBP11.41□□□□□ -0.58
PTPRD-204ENST00000397606 TIAM1Q13009 1591 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms