RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 FBLN2P98095 1184 aa43.92■■■■■ 4.62
CPNE1-203ENST00000397442 RANGAP1P46060 587 aaPredicted RBP43.9■■■■■ 4.62
CPNE1-203ENST00000397442 CHD1O14646 1710 aa43.87■■■■■ 4.61
CPNE1-203ENST00000397442 CEP170Q5SW79 1584 aa43.86■■■■■ 4.61
CPNE1-203ENST00000397442 NUP160Q12769 1436 aa43.83■■■■■ 4.61
CPNE1-203ENST00000397442 KIAA0586Q9BVV6 1533 aa43.79■■■■■ 4.6
CPNE1-203ENST00000397442 IQGAP2Q13576 1575 aa43.79■■■■■ 4.6
CPNE1-203ENST00000397442 ARHGAP35Q9NRY4 1499 aa43.78■■■■■ 4.6
CPNE1-203ENST00000397442 ARAP1Q96P48 1450 aa43.69■■■■■ 4.58
CPNE1-203ENST00000397442 EFCAB5A4FU69 1503 aa43.65■■■■■ 4.58
CPNE1-203ENST00000397442 SAMD9Q5K651 1589 aa43.62■■■■■ 4.57
CPNE1-203ENST00000397442 UGGT2Q9NYU1 1516 aa43.6■■■■■ 4.57
CPNE1-203ENST00000397442 VPS8Q8N3P4 1428 aa43.53■■■■■ 4.56
CPNE1-203ENST00000397442 P3H3Q8IVL6 736 aa43.47■■■■■ 4.55
CPNE1-203ENST00000397442 FHOD3Q2V2M9 1422 aa43.46■■■■■ 4.55
CPNE1-203ENST00000397442 DISP1Q96F81 1524 aa43.42■■■■■ 4.54
CPNE1-203ENST00000397442 JPH4Q96JJ6 628 aa43.41■■■■■ 4.54
CPNE1-203ENST00000397442 CLASP1Q7Z460 1538 aa43.4■■■■■ 4.54
CPNE1-203ENST00000397442 KIAA0556O60303 1618 aa43.37■■■■■ 4.53
CPNE1-203ENST00000397442 SHROOM2Q13796 1616 aa43.32■■■■■ 4.53
CPNE1-203ENST00000397442 FMN1Q68DA7 1419 aa43.23■■■■■ 4.51
CPNE1-203ENST00000397442 CARMIL2Q6F5E8 1435 aa43.21■■■■■ 4.51
CPNE1-203ENST00000397442 PRG4Q92954 1404 aaPredicted RBP43.19■■■■■ 4.51
CPNE1-203ENST00000397442 PCF11O94913 1555 aaKnown RBP43.17■■■■■ 4.5
CPNE1-203ENST00000397442 OSCARQ8IYS5 282 aa43.16■■■■■ 4.5
CPNE1-203ENST00000397442 CASKIN1Q8WXD9 1431 aa43.1■■■■■ 4.49
CPNE1-203ENST00000397442 FYCO1Q9BQS8 1478 aa43.07■■■■■ 4.49
CPNE1-203ENST00000397442 ERCC6L2Q5T890 1561 aa43.05■■■■■ 4.48
CPNE1-203ENST00000397442 PPARGC1BQ86YN6 1023 aaKnown RBP42.96■■■■■ 4.47
CPNE1-203ENST00000397442 APLP2Q06481 763 aa42.95■■■■■ 4.47
CPNE1-203ENST00000397442 TTBK1Q5TCY1 1321 aaPredicted RBP42.93■■■■■ 4.46
CPNE1-203ENST00000397442 MAP3K1Q13233 1512 aa42.91■■■■■ 4.46
CPNE1-203ENST00000397442 LRRIQ1Q96JM4 1722 aa42.88■■■■■ 4.46
CPNE1-203ENST00000397442 TIAM1Q13009 1591 aa42.88■■■■■ 4.45
CPNE1-203ENST00000397442 ATP1B4Q9UN42 357 aaPredicted RBP42.87■■■■■ 4.45
CPNE1-203ENST00000397442 HECW1Q76N89 1606 aa42.86■■■■■ 4.45
CPNE1-203ENST00000397442 RAPGEF6Q8TEU7 1601 aa42.86■■■■■ 4.45
CPNE1-203ENST00000397442 PTPRGP23470 1445 aa42.85■■■■■ 4.45
CPNE1-203ENST00000397442 CFAP43Q8NDM7 1665 aa42.84■■■■■ 4.45
CPNE1-203ENST00000397442 PLB1Q6P1J6 1458 aa42.83■■■■■ 4.45
CPNE1-203ENST00000397442 ABCA8O94911 1581 aa42.8■■■■■ 4.44
CPNE1-203ENST00000397442 KANK4Q5T7N3 995 aaPredicted RBP42.78■■■■■ 4.44
CPNE1-203ENST00000397442 NUP153P49790 1475 aaKnown RBP42.76■■■■■ 4.44
CPNE1-203ENST00000397442 EPRSP07814 1512 aaKnown RBP42.73■■■■■ 4.43
CPNE1-203ENST00000397442 CCDC18Q5T9S5 1454 aa42.71■■■■■ 4.43
CPNE1-203ENST00000397442 LRRC9Q6ZRR7 1453 aa42.67■■■■■ 4.42
CPNE1-203ENST00000397442 CDK13Q14004 1512 aaKnown RBP42.65■■■■■ 4.42
CPNE1-203ENST00000397442 UACAQ9BZF9 1416 aa42.62■■■■■ 4.41
CPNE1-203ENST00000397442 ARID3CA6NKF2 412 aa42.57■■■■■ 4.4
CPNE1-203ENST00000397442 ABCC2Q92887 1545 aa42.52■■■■■ 4.4
CPNE1-203ENST00000397442 MAGI3Q5TCQ9 1506 aa42.52■■■■■ 4.4
CPNE1-203ENST00000397442 TRIM26Q12899 539 aaPredicted RBP42.51■■■■■ 4.4
CPNE1-203ENST00000397442 ARHGEF11O15085 1522 aa42.51■■■■■ 4.39
CPNE1-203ENST00000397442 ATP10BO94823 1461 aa42.48■■■■■ 4.39
CPNE1-203ENST00000397442 UHRF1BP1LA0JNW5 1464 aa42.47■■■■■ 4.39
CPNE1-203ENST00000397442 MTUS2Q5JR59 1369 aa42.46■■■■■ 4.39
CPNE1-203ENST00000397442 EHBP1L1Q8N3D4 1523 aa42.44■■■■■ 4.38
CPNE1-203ENST00000397442 ADCY10Q96PN6 1610 aa42.36■■■■■ 4.37
CPNE1-203ENST00000397442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.36■■■■■ 4.37
CPNE1-203ENST00000397442 HNRNPUL2Q1KMD3 747 aaKnown RBP42.36■■■■■ 4.37
CPNE1-203ENST00000397442 RIMBP3CA6NJZ7 1639 aa42.34■■■■■ 4.37
CPNE1-203ENST00000397442 RIMBP3BA6NNM3 1639 aa42.34■■■■■ 4.37
CPNE1-203ENST00000397442 RIMBP3Q9UFD9 1639 aa42.34■■■■■ 4.37
CPNE1-203ENST00000397442 PCGF6Q9BYE7 350 aa42.31■■■■■ 4.36
CPNE1-203ENST00000397442 CDK11AQ9UQ88 783 aaPredicted RBP42.31■■■■■ 4.36
CPNE1-203ENST00000397442 KDM5BQ9UGL1 1544 aa42.3■■■■■ 4.36
CPNE1-203ENST00000397442 SUPT6HQ7KZ85 1726 aaKnown RBP42.29■■■■■ 4.36
CPNE1-203ENST00000397442 TROQ12816 1431 aaPredicted RBP42.26■■■■■ 4.36
CPNE1-203ENST00000397442 PHLDB1Q86UU1 1377 aa42.26■■■■■ 4.36
CPNE1-203ENST00000397442 ZCCHC11Q5TAX3 1644 aaKnown RBP42.25■■■■■ 4.35
CPNE1-203ENST00000397442 NCOA2Q15596 1464 aa42.25■■■■■ 4.35
CPNE1-203ENST00000397442 PLEKHD1A6NEE1 506 aa42.18■■■■■ 4.34
CPNE1-203ENST00000397442 RRBP1Q9P2E9 1410 aaKnown RBP42.16■■■■■ 4.34
CPNE1-203ENST00000397442 KIF14Q15058 1648 aa42.11■■■■■ 4.33
CPNE1-203ENST00000397442 MYOM3Q5VTT5 1437 aa42.04■■■■■ 4.32
CPNE1-203ENST00000397442 CYB5RLQ6IPT4 315 aa42.04■■■■■ 4.32
CPNE1-203ENST00000397442 CCNB3Q8WWL7 1395 aa42.03■■■■■ 4.32
CPNE1-203ENST00000397442 FGD6Q6ZV73 1430 aa41.99■■■■■ 4.31
CPNE1-203ENST00000397442 ABCC10Q5T3U5 1492 aa41.97■■■■■ 4.31
CPNE1-203ENST00000397442 WDR7Q9Y4E6 1490 aa41.89■■■■■ 4.3
CPNE1-203ENST00000397442 NPM1P06748 294 aaKnown RBP eCLIP41.88■■■■■ 4.29
CPNE1-203ENST00000397442 ASXL2Q76L83 1435 aa41.87■■■■■ 4.29
CPNE1-203ENST00000397442 GPATCH8Q9UKJ3 1502 aaKnown RBP41.87■■■■■ 4.29
CPNE1-203ENST00000397442 MIA2Q96PC5 1412 aa41.85■■■■■ 4.29
CPNE1-203ENST00000397442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.84■■■■■ 4.291e-38■■□□□ 13.2
CPNE1-203ENST00000397442 ITSN2Q9NZM3 1697 aa41.83■■■■■ 4.29
CPNE1-203ENST00000397442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.83■■■■■ 4.297e-10■■□□□ 13.2
CPNE1-203ENST00000397442 CDC42BPAQ5VT25 1732 aa41.82■■■■■ 4.29
CPNE1-203ENST00000397442 PTPN23Q9H3S7 1636 aa41.82■■■■■ 4.29
CPNE1-203ENST00000397442 TTC37Q6PGP7 1564 aa41.81■■■■■ 4.28
CPNE1-203ENST00000397442 KCNH8Q96L42 1107 aa41.8■■■■■ 4.28
CPNE1-203ENST00000397442 TCOF1Q13428 1488 aaKnown RBP41.79■■■■■ 4.28
CPNE1-203ENST00000397442 FAM50AQ14320 339 aaKnown RBP41.77■■■■■ 4.28
CPNE1-203ENST00000397442 MAPKBP1O60336 1514 aa41.71■■■■■ 4.27
CPNE1-203ENST00000397442 PREX2Q70Z35 1606 aa41.69■■■■■ 4.26
CPNE1-203ENST00000397442 CFDP1Q9UEE9 299 aaPredicted RBP41.68■■■■■ 4.26
CPNE1-203ENST00000397442 CDC42BPBQ9Y5S2 1711 aa41.67■■■■■ 4.26
CPNE1-203ENST00000397442 MYO5CQ9NQX4 1742 aa41.65■■■■■ 4.26
CPNE1-203ENST00000397442 ABCA9Q8IUA7 1624 aa41.63■■■■■ 4.26
CPNE1-203ENST00000397442 ZNF644Q9H582 1327 aaPredicted RBP41.62■■■■■ 4.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms