RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.67■■■□□ 2.341e-6■■■■■ 117.8
CPNE1-203ENST00000397442 XPO5Q9HAV4 1204 aaKnown RBP eCLIP32.17■■■□□ 2.749e-8■■■■■ 116.8
CPNE1-203ENST00000397442 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP28.13■■■□□ 2.093e-13■■■■■ 108.9
CPNE1-203ENST00000397442 SF3B1O75533 1304 aaKnown RBP eCLIP29.11■■■□□ 2.252e-6■■■■■ 85.9
CPNE1-203ENST00000397442 CSTF2P33240 577 aaKnown RBP eCLIP25.9■■□□□ 1.742e-45■■■■■ 66.1
CPNE1-203ENST00000397442 BUD13Q9BRD0 619 aaKnown RBP eCLIP29.18■■■□□ 2.264e-13■■■■■ 56.2
CPNE1-203ENST00000397442 WDR3Q9UNX4 943 aaKnown RBP eCLIP29.23■■■□□ 2.272e-6■■■■■ 55.4
CPNE1-203ENST00000397442 PCBP1Q15365 356 aaKnown RBP eCLIP29.93■■■□□ 2.381e-8■■■■■ 43
CPNE1-203ENST00000397442 TIA1P31483 386 aaKnown RBP eCLIP26.25■■□□□ 1.793e-7■■■■■ 41.5
CPNE1-203ENST00000397442 SF3B4Q15427 424 aaKnown RBP eCLIP24.24■■□□□ 1.471e-7■■■■■ 40
CPNE1-203ENST00000397442 ILF3Q12906 894 aaKnown RBP eCLIP26.73■■□□□ 1.877e-7■■■■■ 35.6
CPNE1-203ENST00000397442 PUM2Q8TB72 1066 aaKnown RBP eCLIP26.21■■□□□ 1.798e-8■■■■■ 32.7
CPNE1-203ENST00000397442 TIAL1Q01085 375 aaKnown RBP eCLIP27.3■■□□□ 1.961e-6■■■■■ 29.1
CPNE1-203ENST00000397442 DDX24Q9GZR7 859 aaKnown RBP eCLIP33.17■■■□□ 2.93e-7■■■■■ 27.1
CPNE1-203ENST00000397442 AQRO60306 1485 aaKnown RBP eCLIP44.82■■■■■ 4.773e-7■■■■■ 27
CPNE1-203ENST00000397442 TBRG4Q969Z0 631 aaKnown RBP eCLIP27.32■■□□□ 1.962e-6■■■■■ 26.8
CPNE1-203ENST00000397442 EFTUD2Q15029 972 aaKnown RBP eCLIP27.68■■■□□ 2.026e-8■■■■□ 26.4
CPNE1-203ENST00000397442 RBFOX2O43251 390 aaKnown RBP eCLIP22.28■■□□□ 1.167e-8■■■■□ 26.3
CPNE1-203ENST00000397442 GPKOWQ92917 476 aaPredicted RBP eCLIP31.75■■■□□ 2.671e-7■■■■□ 26.1
CPNE1-203ENST00000397442 HNRNPMP52272 730 aaKnown RBP eCLIP41.28■■■■■ 4.21e-7■■■■□ 25.4
CPNE1-203ENST00000397442 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP23.19■■□□□ 1.31e-7■■■■□ 24.8
CPNE1-203ENST00000397442 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP27.64■■■□□ 2.022e-16■■■■□ 24.6
CPNE1-203ENST00000397442 SUB1P53999 127 aaKnown RBP eCLIP21.66■■□□□ 1.061e-12■■■■□ 22.8
CPNE1-203ENST00000397442 U2AF2P26368 475 aaKnown RBP eCLIP31.7■■■□□ 2.679e-27■■■■□ 22.3
CPNE1-203ENST00000397442 YBX3P16989 372 aaKnown RBP eCLIP32.69■■■□□ 2.822e-6■■■■□ 21.8
CPNE1-203ENST00000397442 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP24.84■■□□□ 1.575e-12■■■■□ 21.5
CPNE1-203ENST00000397442 SMNDC1O75940 238 aaKnown RBP eCLIP24.7■■□□□ 1.541e-15■■■■□ 21.1
CPNE1-203ENST00000397442 DDX6P26196 483 aaKnown RBP eCLIP28.33■■■□□ 2.139e-13■■■■□ 20.8
CPNE1-203ENST00000397442 IGF2BP3O00425 579 aaKnown RBP eCLIP31.16■■■□□ 2.582e-7■■■■□ 20.3
CPNE1-203ENST00000397442 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP22.3■■□□□ 1.168e-8■■■■□ 20.3
CPNE1-203ENST00000397442 SAFBQ15424 915 aaKnown RBP eCLIP31.67■■■□□ 2.661e-17■■■■□ 20.2
CPNE1-203ENST00000397442 FMR1Q06787 632 aaKnown RBP eCLIP31.73■■■□□ 2.677e-7■■■□□ 18.6
CPNE1-203ENST00000397442 RPS3P23396 243 aaKnown RBP eCLIP27.25■■□□□ 1.953e-8■■■□□ 18.5
CPNE1-203ENST00000397442 FXR2P51116 673 aaKnown RBP eCLIP31.1■■■□□ 2.572e-6■■■□□ 18.4
CPNE1-203ENST00000397442 BCCIPQ9P287 314 aaKnown RBP eCLIP27.55■■■□□ 25e-7■■■□□ 17.8
CPNE1-203ENST00000397442 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP26.39■■□□□ 1.824e-6■■■□□ 17.2
CPNE1-203ENST00000397442 HNRNPCP07910 306 aaKnown RBP eCLIP22.23■■□□□ 1.157e-7■■■□□ 17.1
CPNE1-203ENST00000397442 SF3A3Q12874 501 aaKnown RBP eCLIP26.81■■□□□ 1.883e-8■■■□□ 16.9
CPNE1-203ENST00000397442 PABPC4Q13310 644 aaKnown RBP eCLIP31.32■■■□□ 2.64e-7■■■□□ 15.8
CPNE1-203ENST00000397442 KHSRPQ92945 711 aaKnown RBP eCLIP28.94■■■□□ 2.228e-8■■■□□ 15.7
CPNE1-203ENST00000397442 RBM5P52756 815 aaKnown RBP eCLIP32.59■■■□□ 2.812e-6■■■□□ 15.7
CPNE1-203ENST00000397442 DDX3XO00571 662 aaKnown RBP eCLIP29.41■■■□□ 2.31e-13■■■□□ 15.3
CPNE1-203ENST00000397442 QKIQ96PU8 341 aaKnown RBP eCLIP28.29■■■□□ 2.126e-7■■■□□ 15.2
CPNE1-203ENST00000397442 RBM15Q96T37 977 aaKnown RBP eCLIP27.97■■■□□ 2.072e-7■■■□□ 15.1
CPNE1-203ENST00000397442 GTF2F1P35269 517 aaKnown RBP eCLIP28.57■■■□□ 2.166e-10■■■□□ 14.7
CPNE1-203ENST00000397442 HLTFQ14527 1009 aaKnown RBP eCLIP28.16■■■□□ 2.15e-8■■□□□ 14.2
CPNE1-203ENST00000397442 DDX59Q5T1V6 619 aaKnown RBP eCLIP25.8■■□□□ 1.722e-6■■□□□ 13.7
CPNE1-203ENST00000397442 EIF3HO15372 352 aaKnown RBP eCLIP27.91■■■□□ 2.068e-7■■□□□ 13.6
CPNE1-203ENST00000397442 PPIGQ13427 754 aaKnown RBP eCLIP29.25■■■□□ 2.275e-12■■□□□ 13.5
CPNE1-203ENST00000397442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP41.83■■■■■ 4.297e-10■■□□□ 13.2
CPNE1-203ENST00000397442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP41.84■■■■■ 4.291e-38■■□□□ 13.2
CPNE1-203ENST00000397442 ZRANB2O95218 330 aaKnown RBP eCLIP28.67■■■□□ 2.181e-6■■□□□ 12.9
CPNE1-203ENST00000397442 RBM22Q9NW64 420 aaKnown RBP eCLIP28.04■■■□□ 2.089e-7■■□□□ 12.8
CPNE1-203ENST00000397442 U2AF1Q01081 240 aaKnown RBP eCLIP36.59■■■■□ 3.456e-11■■□□□ 12.7
CPNE1-203ENST00000397442 PCBP2Q15366 365 aaKnown RBP eCLIP26.82■■□□□ 1.885e-8■■□□□ 12.6
CPNE1-203ENST00000397442 FUSP35637 526 aaKnown RBP eCLIP17.67■□□□□ 0.421e-10■■□□□ 12.2
CPNE1-203ENST00000397442 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.84■■■■□ 3.331e-6■■□□□ 12.2
CPNE1-203ENST00000397442 ZNF622Q969S3 477 aaKnown RBP eCLIP33.42■■■□□ 2.944e-6■■□□□ 12.1
CPNE1-203ENST00000397442 LIN28BQ6ZN17 250 aaKnown RBP eCLIP29.38■■■□□ 2.291e-8■■□□□ 11.7
CPNE1-203ENST00000397442 PABPN1Q86U42 306 aaKnown RBP eCLIP50.18■■■■■ 5.621e-6■■□□□ 11.6
CPNE1-203ENST00000397442 PRPF4O43172 522 aaKnown RBP eCLIP27.32■■□□□ 1.962e-8■□□□□ 11.3
CPNE1-203ENST00000397442 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP29.89■■■□□ 2.388e-7■□□□□ 11.3
CPNE1-203ENST00000397442 SLTMQ9NWH9 1034 aaKnown RBP eCLIP28.51■■■□□ 2.152e-10■□□□□ 11.3
CPNE1-203ENST00000397442 SFPQP23246 707 aaKnown RBP eCLIP29.89■■■□□ 2.388e-7■□□□□ 11.1
CPNE1-203ENST00000397442 G3BP1Q13283 466 aaKnown RBP eCLIP33.99■■■■□ 3.032e-8■□□□□ 11.1
CPNE1-203ENST00000397442 SDAD1Q9NVU7 687 aaKnown RBP eCLIP26.14■■□□□ 1.788e-7■□□□□ 11.1
CPNE1-203ENST00000397442 GRSF1Q12849 480 aaKnown RBP eCLIP27.54■■■□□ 23e-10■□□□□ 10.9
CPNE1-203ENST00000397442 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.27■■■■■ 4.049e-9■□□□□ 10.7
CPNE1-203ENST00000397442 NIPBLQ6KC79 2804 aaeCLIP21.21■□□□□ 0.991e-8■□□□□ 10.5
CPNE1-203ENST00000397442 XRN2Q9H0D6 950 aaKnown RBP eCLIP30.14■■■□□ 2.426e-9■□□□□ 10.4
CPNE1-203ENST00000397442 DDX55Q8NHQ9 600 aaKnown RBP eCLIP31.86■■■□□ 2.692e-6■□□□□ 10.3
CPNE1-203ENST00000397442 HNRNPLP14866 589 aaKnown RBP eCLIP27.63■■■□□ 2.012e-8■□□□□ 10.1
CPNE1-203ENST00000397442 NCBP2P52298 156 aaKnown RBP eCLIP25.87■■□□□ 1.739e-8■□□□□ 9.8
CPNE1-203ENST00000397442 SRSF7Q16629 238 aaKnown RBP eCLIP22.93■■□□□ 1.261e-7■□□□□ 9.8
CPNE1-203ENST00000397442 TAF15Q92804 592 aaKnown RBP eCLIP21.56■■□□□ 1.041e-6■□□□□ 9.7
CPNE1-203ENST00000397442 FTOQ9C0B1 505 aaKnown RBP eCLIP31.59■■■□□ 2.655e-10■□□□□ 9.7
CPNE1-203ENST00000397442 LARP4Q71RC2 724 aaKnown RBP eCLIP26.54■■□□□ 1.848e-24■□□□□ 9.5
CPNE1-203ENST00000397442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP31.15■■■□□ 2.583e-8■□□□□ 9.3
CPNE1-203ENST00000397442 SRSF1Q07955 248 aaKnown RBP eCLIP23.38■■□□□ 1.333e-6■□□□□ 9.1
CPNE1-203ENST00000397442 SAFB2Q14151 953 aaKnown RBP eCLIP38.15■■■■□ 3.73e-13■□□□□ 9.1
CPNE1-203ENST00000397442 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.8■■■□□ 2.362e-10■□□□□ 8.4
CPNE1-203ENST00000397442 NOLC1Q14978 699 aaKnown RBP eCLIP29.94■■■□□ 2.383e-8■□□□□ 8.2
Retrieved 82 of 82 RNA–protein pairs in 46.4 ms