RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 MAP3K1Q13233 1512 aa22.78■■□□□ 1.24
CBX3-202ENST00000396386 TIAM1Q13009 1591 aa22.76■■□□□ 1.23
CBX3-202ENST00000396386 FHAD1B1AJZ9 1412 aa22.76■■□□□ 1.23
CBX3-202ENST00000396386 CFAP43Q8NDM7 1665 aa22.76■■□□□ 1.23
CBX3-202ENST00000396386 PCF11O94913 1555 aaKnown RBP22.76■■□□□ 1.23
CBX3-202ENST00000396386 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
CBX3-202ENST00000396386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.74■■□□□ 1.23
CBX3-202ENST00000396386 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
CBX3-202ENST00000396386 CCER1Q8TC90 406 aaPredicted RBP22.72■■□□□ 1.23
CBX3-202ENST00000396386 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
CBX3-202ENST00000396386 SAMD9Q5K651 1589 aa22.71■■□□□ 1.23
CBX3-202ENST00000396386 KANK4Q5T7N3 995 aaPredicted RBP22.68■■□□□ 1.22
CBX3-202ENST00000396386 FHOD3Q2V2M9 1422 aa22.68■■□□□ 1.22
CBX3-202ENST00000396386 GRIN2BQ13224 1484 aa22.67■■□□□ 1.22
CBX3-202ENST00000396386 FYCO1Q9BQS8 1478 aa22.67■■□□□ 1.22
CBX3-202ENST00000396386 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.222e-9■■■□□ 17.3
CBX3-202ENST00000396386 RRBP1Q9P2E9 1410 aaKnown RBP22.63■■□□□ 1.21
CBX3-202ENST00000396386 EIF4G3O43432 1585 aaKnown RBP22.62■■□□□ 1.21
CBX3-202ENST00000396386 CASKIN1Q8WXD9 1431 aa22.6■■□□□ 1.21
CBX3-202ENST00000396386 LRRC9Q6ZRR7 1453 aa22.6■■□□□ 1.21
CBX3-202ENST00000396386 HNRNPUL2Q1KMD3 747 aaKnown RBP22.6■■□□□ 1.21
CBX3-202ENST00000396386 ZNF608Q9ULD9 1512 aaPredicted RBP22.59■■□□□ 1.21
CBX3-202ENST00000396386 FMN1Q68DA7 1419 aa22.59■■□□□ 1.21
CBX3-202ENST00000396386 P3H3Q8IVL6 736 aa22.58■■□□□ 1.2
CBX3-202ENST00000396386 IQGAP2Q13576 1575 aa22.57■■□□□ 1.2
CBX3-202ENST00000396386 SNAPC4Q5SXM2 1469 aa22.55■■□□□ 1.2
CBX3-202ENST00000396386 CCNB3Q8WWL7 1395 aa22.51■■□□□ 1.19
CBX3-202ENST00000396386 LRRIQ1Q96JM4 1722 aa22.49■■□□□ 1.19
CBX3-202ENST00000396386 MAGI1Q96QZ7 1491 aaPredicted RBP22.44■■□□□ 1.18
CBX3-202ENST00000396386 UGGT2Q9NYU1 1516 aa22.43■■□□□ 1.18
CBX3-202ENST00000396386 ATP1B4Q9UN42 357 aaPredicted RBP22.42■■□□□ 1.18
CBX3-202ENST00000396386 GRIN2AQ12879 1464 aa22.42■■□□□ 1.18
CBX3-202ENST00000396386 HECW1Q76N89 1606 aa22.4■■□□□ 1.18
CBX3-202ENST00000396386 PHLDB1Q86UU1 1377 aa22.39■■□□□ 1.17
CBX3-202ENST00000396386 KIAA0586Q9BVV6 1533 aa22.37■■□□□ 1.17
CBX3-202ENST00000396386 CCDC18Q5T9S5 1454 aa22.35■■□□□ 1.17
CBX3-202ENST00000396386 EHBP1L1Q8N3D4 1523 aa22.35■■□□□ 1.17
CBX3-202ENST00000396386 KIAA0556O60303 1618 aa22.34■■□□□ 1.17
CBX3-202ENST00000396386 SYNJ2O15056 1496 aa22.34■■□□□ 1.17
CBX3-202ENST00000396386 SUPT6HQ7KZ85 1726 aaKnown RBP22.33■■□□□ 1.16
CBX3-202ENST00000396386 MTUS2Q5JR59 1369 aa22.3■■□□□ 1.16
CBX3-202ENST00000396386 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
CBX3-202ENST00000396386 DISP1Q96F81 1524 aa22.26■■□□□ 1.15
CBX3-202ENST00000396386 DHX57Q6P158 1386 aaKnown RBP22.26■■□□□ 1.15
CBX3-202ENST00000396386 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.25■■□□□ 1.15
CBX3-202ENST00000396386 CLSPNQ9HAW4 1339 aa22.24■■□□□ 1.15
CBX3-202ENST00000396386 FGD6Q6ZV73 1430 aa22.23■■□□□ 1.15
CBX3-202ENST00000396386 NCOA2Q15596 1464 aa22.22■■□□□ 1.15
CBX3-202ENST00000396386 EPRSP07814 1512 aaKnown RBP22.22■■□□□ 1.15
CBX3-202ENST00000396386 MAGI3Q5TCQ9 1506 aa22.21■■□□□ 1.15
CBX3-202ENST00000396386 ITGAEP38570 1179 aa22.21■■□□□ 1.15
CBX3-202ENST00000396386 NUP160Q12769 1436 aa22.2■■□□□ 1.14
CBX3-202ENST00000396386 ARHGEF11O15085 1522 aa22.2■■□□□ 1.14
CBX3-202ENST00000396386 FAM50AQ14320 339 aaKnown RBP22.2■■□□□ 1.14
CBX3-202ENST00000396386 RAPGEF6Q8TEU7 1601 aa22.19■■□□□ 1.14
CBX3-202ENST00000396386 CHMP7Q8WUX9 453 aaPredicted RBP22.19■■□□□ 1.14
CBX3-202ENST00000396386 CDK13Q14004 1512 aaKnown RBP22.17■■□□□ 1.14
CBX3-202ENST00000396386 MYOM3Q5VTT5 1437 aa22.17■■□□□ 1.14
CBX3-202ENST00000396386 RAB3GAP2Q9H2M9 1393 aa22.16■■□□□ 1.14
CBX3-202ENST00000396386 SETD5Q9C0A6 1442 aa22.15■■□□□ 1.14
CBX3-202ENST00000396386 PTPN23Q9H3S7 1636 aa22.13■■□□□ 1.13
CBX3-202ENST00000396386 NUP153P49790 1475 aaKnown RBP22.09■■□□□ 1.13
CBX3-202ENST00000396386 FBLN2P98095 1184 aa22.09■■□□□ 1.13
CBX3-202ENST00000396386 CARMIL2Q6F5E8 1435 aa22.08■■□□□ 1.13
CBX3-202ENST00000396386 CHD1O14646 1710 aa22.07■■□□□ 1.12
CBX3-202ENST00000396386 TCOF1Q13428 1488 aaKnown RBP22.05■■□□□ 1.12
CBX3-202ENST00000396386 MAPKBP1O60336 1514 aa22.04■■□□□ 1.12
CBX3-202ENST00000396386 MIA2Q96PC5 1412 aa21.99■■□□□ 1.11
CBX3-202ENST00000396386 ZNF316A6NFI3 1004 aaPredicted RBP21.98■■□□□ 1.11
CBX3-202ENST00000396386 HFM1A2PYH4 1435 aa21.98■■□□□ 1.11
CBX3-202ENST00000396386 GCC2Q8IWJ2 1684 aa21.97■■□□□ 1.11
CBX3-202ENST00000396386 PLB1Q6P1J6 1458 aa21.97■■□□□ 1.11
CBX3-202ENST00000396386 JPH4Q96JJ6 628 aa21.97■■□□□ 1.11
CBX3-202ENST00000396386 ADCY10Q96PN6 1610 aa21.97■■□□□ 1.11
CBX3-202ENST00000396386 ABCA8O94911 1581 aa21.96■■□□□ 1.11
CBX3-202ENST00000396386 PTPRKQ15262 1439 aa21.96■■□□□ 1.11
CBX3-202ENST00000396386 ARID3CA6NKF2 412 aa21.94■■□□□ 1.1
CBX3-202ENST00000396386 ITSN2Q9NZM3 1697 aa21.94■■□□□ 1.1
CBX3-202ENST00000396386 CDK11AQ9UQ88 783 aaPredicted RBP21.91■■□□□ 1.1
CBX3-202ENST00000396386 TROQ12816 1431 aaPredicted RBP21.91■■□□□ 1.1
CBX3-202ENST00000396386 SHROOM2Q13796 1616 aa21.91■■□□□ 1.1
CBX3-202ENST00000396386 DIEXFQ68CQ4 756 aaKnown RBP21.9■■□□□ 1.1
CBX3-202ENST00000396386 AKNAQ7Z591 1439 aa21.89■■□□□ 1.09
CBX3-202ENST00000396386 NAIPQ13075 1403 aa21.88■■□□□ 1.09
CBX3-202ENST00000396386 DNMT1P26358 1616 aaKnown RBP21.86■■□□□ 1.09
CBX3-202ENST00000396386 PRG4Q92954 1404 aaPredicted RBP21.86■■□□□ 1.09
CBX3-202ENST00000396386 KIF14Q15058 1648 aa21.86■■□□□ 1.09
CBX3-202ENST00000396386 UACAQ9BZF9 1416 aa21.84■■□□□ 1.09
CBX3-202ENST00000396386 DAPK1P53355 1430 aa21.79■■□□□ 1.08
CBX3-202ENST00000396386 OSCARQ8IYS5 282 aa21.78■■□□□ 1.08
CBX3-202ENST00000396386 ATP10BO94823 1461 aa21.77■■□□□ 1.07
CBX3-202ENST00000396386 CROCC2H7BZ55 1655 aa21.77■■□□□ 1.07
CBX3-202ENST00000396386 ADGBQ8N7X0 1667 aa21.77■■□□□ 1.07
CBX3-202ENST00000396386 PTPRGP23470 1445 aa21.76■■□□□ 1.07
CBX3-202ENST00000396386 CDC42BPAQ5VT25 1732 aa21.76■■□□□ 1.07
CBX3-202ENST00000396386 CAMSAP2Q08AD1 1489 aa21.76■■□□□ 1.07
CBX3-202ENST00000396386 CLASP1Q7Z460 1538 aa21.74■■□□□ 1.07
CBX3-202ENST00000396386 GPATCH8Q9UKJ3 1502 aaKnown RBP21.74■■□□□ 1.07
CBX3-202ENST00000396386 KDM6BO15054 1643 aa21.73■■□□□ 1.07
CBX3-202ENST00000396386 ROCK1Q13464 1354 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms