RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 NISCHQ9Y2I1 1504 aa32.89■■■□□ 2.86
CBX3-202ENST00000396386 CCDC180Q9P1Z9 1646 aa28.57■■■□□ 2.16
CBX3-202ENST00000396386 ZCCHC6Q5VYS8 1495 aaKnown RBP27.76■■■□□ 2.03
CBX3-202ENST00000396386 DCAF1Q9Y4B6 1507 aa27.19■■□□□ 1.94
CBX3-202ENST00000396386 SHROOM4Q9ULL8 1493 aa27.16■■□□□ 1.94
CBX3-202ENST00000396386 DCAF8L2P0C7V8 631 aa26.92■■□□□ 1.9
CBX3-202ENST00000396386 MYO15BQ96JP2 1530 aa26.68■■□□□ 1.86
CBX3-202ENST00000396386 ABCC9O60706 1549 aa26.57■■□□□ 1.84
CBX3-202ENST00000396386 NACADO15069 1562 aa26.42■■□□□ 1.82
CBX3-202ENST00000396386 SCRIBQ14160 1630 aa26.33■■□□□ 1.81
CBX3-202ENST00000396386 SUPT5HO00267 1087 aaKnown RBP26.3■■□□□ 1.8
CBX3-202ENST00000396386 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
CBX3-202ENST00000396386 UNC13AQ9UPW8 1703 aa25.7■■□□□ 1.7
CBX3-202ENST00000396386 RSF1Q96T23 1441 aaPredicted RBP25.66■■□□□ 1.7
CBX3-202ENST00000396386 CECR2Q9BXF3 1484 aa25.51■■□□□ 1.67
CBX3-202ENST00000396386 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
CBX3-202ENST00000396386 CHIC1Q5VXU3 224 aa25.4■■□□□ 1.66
CBX3-202ENST00000396386 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
CBX3-202ENST00000396386 WIZO95785 1651 aa25.31■■□□□ 1.64
CBX3-202ENST00000396386 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
CBX3-202ENST00000396386 SMARCA4P51532 1647 aa25.25■■□□□ 1.63
CBX3-202ENST00000396386 TOP2AP11388 1531 aaKnown RBP25.04■■□□□ 1.6
CBX3-202ENST00000396386 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
CBX3-202ENST00000396386 DNAJC5BQ9UF47 199 aa24.96■■□□□ 1.59
CBX3-202ENST00000396386 PEG3Q9GZU2 1588 aa24.89■■□□□ 1.57
CBX3-202ENST00000396386 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
CBX3-202ENST00000396386 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
CBX3-202ENST00000396386 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
CBX3-202ENST00000396386 TRIM41Q8WV44 630 aa24.68■■□□□ 1.54
CBX3-202ENST00000396386 ATAD2BQ9ULI0 1458 aa24.64■■□□□ 1.54
CBX3-202ENST00000396386 BAZ1BQ9UIG0 1483 aaKnown RBP24.56■■□□□ 1.52
CBX3-202ENST00000396386 LOC105371045A0A1W2PR82 267 aa24.44■■□□□ 1.5
CBX3-202ENST00000396386 ABCC8Q09428 1581 aa24.44■■□□□ 1.5
CBX3-202ENST00000396386 HMGXB3Q12766 1538 aa24.41■■□□□ 1.5
CBX3-202ENST00000396386 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
CBX3-202ENST00000396386 FAM9AQ8IZU1 332 aaPredicted RBP24.27■■□□□ 1.48
CBX3-202ENST00000396386 WRNQ14191 1432 aaPredicted RBP eCLIP24.17■■□□□ 1.46
CBX3-202ENST00000396386 SYNJ1O43426 1573 aa24.12■■□□□ 1.45
CBX3-202ENST00000396386 CC2D2AQ9P2K1 1620 aa24.07■■□□□ 1.44
CBX3-202ENST00000396386 EEA1Q15075 1411 aa24.06■■□□□ 1.44
CBX3-202ENST00000396386 PRDM2Q13029 1718 aa24.02■■□□□ 1.44
CBX3-202ENST00000396386 SOGA1O94964 1423 aa24■■□□□ 1.43
CBX3-202ENST00000396386 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
CBX3-202ENST00000396386 TOP2BQ02880 1626 aa23.97■■□□□ 1.43
CBX3-202ENST00000396386 CFTRP13569 1480 aa23.93■■□□□ 1.42
CBX3-202ENST00000396386 EHMT2Q96KQ7 1210 aa23.93■■□□□ 1.42
CBX3-202ENST00000396386 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.41
CBX3-202ENST00000396386 PCGF6Q9BYE7 350 aa23.83■■□□□ 1.41
CBX3-202ENST00000396386 CSRNP3Q8WYN3 585 aa23.81■■□□□ 1.4
CBX3-202ENST00000396386 KIF21BO75037 1637 aa23.8■■□□□ 1.4
CBX3-202ENST00000396386 GOLGA3Q08378 1498 aa23.78■■□□□ 1.4
CBX3-202ENST00000396386 CUX1P39880 1505 aa23.77■■□□□ 1.4
CBX3-202ENST00000396386 TNIKQ9UKE5 1360 aa23.74■■□□□ 1.39
CBX3-202ENST00000396386 CEP164Q9UPV0 1460 aa23.72■■□□□ 1.39
CBX3-202ENST00000396386 CADPSQ9ULU8 1353 aa23.71■■□□□ 1.39
CBX3-202ENST00000396386 TRIM26Q12899 539 aaPredicted RBP23.71■■□□□ 1.39
CBX3-202ENST00000396386 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
CBX3-202ENST00000396386 UBTFP17480 764 aaKnown RBP23.57■■□□□ 1.36
CBX3-202ENST00000396386 HRCP23327 699 aa23.55■■□□□ 1.36
CBX3-202ENST00000396386 ERICH3Q5RHP9 1530 aa23.53■■□□□ 1.36
CBX3-202ENST00000396386 FANCD2Q9BXW9 1451 aa23.52■■□□□ 1.36
CBX3-202ENST00000396386 RAPGEF2Q9Y4G8 1499 aa23.52■■□□□ 1.36
CBX3-202ENST00000396386 KIF27Q86VH2 1401 aa23.5■■□□□ 1.35
CBX3-202ENST00000396386 LAMC3Q9Y6N6 1575 aa23.49■■□□□ 1.35
CBX3-202ENST00000396386 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
CBX3-202ENST00000396386 FGD5Q6ZNL6 1462 aa23.44■■□□□ 1.34
CBX3-202ENST00000396386 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
CBX3-202ENST00000396386 NESP48681 1621 aa23.43■■□□□ 1.34
CBX3-202ENST00000396386 CLIP1P30622 1438 aa23.39■■□□□ 1.34
CBX3-202ENST00000396386 CUX2O14529 1486 aa23.36■■□□□ 1.33
CBX3-202ENST00000396386 TOPBP1Q92547 1522 aa23.33■■□□□ 1.33
CBX3-202ENST00000396386 PPARGC1BQ86YN6 1023 aaKnown RBP23.28■■□□□ 1.32
CBX3-202ENST00000396386 VPS8Q8N3P4 1428 aa23.26■■□□□ 1.31
CBX3-202ENST00000396386 KIF21AQ7Z4S6 1674 aa23.25■■□□□ 1.31
CBX3-202ENST00000396386 POLA1P09884 1462 aaPredicted RBP23.25■■□□□ 1.31
CBX3-202ENST00000396386 PDS5BQ9NTI5 1447 aa23.24■■□□□ 1.31
CBX3-202ENST00000396386 ABCA10Q8WWZ4 1543 aa23.23■■□□□ 1.31
CBX3-202ENST00000396386 WDR97A6NE52 1622 aa23.22■■□□□ 1.31
CBX3-202ENST00000396386 URB2Q14146 1524 aaKnown RBP23.21■■□□□ 1.31
CBX3-202ENST00000396386 IGF1RP08069 1367 aa23.19■■□□□ 1.3
CBX3-202ENST00000396386 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
CBX3-202ENST00000396386 ARAP1Q96P48 1450 aa23.14■■□□□ 1.29
CBX3-202ENST00000396386 CUL7Q14999 1698 aa23.13■■□□□ 1.29
CBX3-202ENST00000396386 CARMIL1Q5VZK9 1371 aa23.11■■□□□ 1.29
CBX3-202ENST00000396386 RANGAP1P46060 587 aaPredicted RBP23.07■■□□□ 1.28
CBX3-202ENST00000396386 ABCA5Q8WWZ7 1642 aa23.07■■□□□ 1.28
CBX3-202ENST00000396386 TTBK1Q5TCY1 1321 aaPredicted RBP23.05■■□□□ 1.28
CBX3-202ENST00000396386 ARHGAP35Q9NRY4 1499 aa23.02■■□□□ 1.28
CBX3-202ENST00000396386 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
CBX3-202ENST00000396386 CTTNBP2Q8WZ74 1663 aa22.99■■□□□ 1.27
CBX3-202ENST00000396386 APLP2Q06481 763 aa22.98■■□□□ 1.27
CBX3-202ENST00000396386 TARBP1Q13395 1621 aaKnown RBP22.97■■□□□ 1.27
CBX3-202ENST00000396386 MRC2Q9UBG0 1479 aa22.97■■□□□ 1.27
CBX3-202ENST00000396386 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
CBX3-202ENST00000396386 ERCC6Q03468 1493 aa22.92■■□□□ 1.26
CBX3-202ENST00000396386 GAPVD1Q14C86 1478 aa22.91■■□□□ 1.26
CBX3-202ENST00000396386 PBRM1Q86U86 1689 aa22.89■■□□□ 1.25
CBX3-202ENST00000396386 EFCAB5A4FU69 1503 aa22.86■■□□□ 1.25
CBX3-202ENST00000396386 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
CBX3-202ENST00000396386 WDR62O43379 1518 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms