RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 GTF3C3Q9Y5Q9 886 aa20.08■□□□□ 0.8
GTF2F1-201ENST00000394456 ABCA5Q8WWZ7 1642 aa20.07■□□□□ 0.8
GTF2F1-201ENST00000394456 MIER1Q8N108 512 aa20.06■□□□□ 0.8
GTF2F1-201ENST00000394456 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
GTF2F1-201ENST00000394456 GAPVD1Q14C86 1478 aa20.04■□□□□ 0.8
GTF2F1-201ENST00000394456 TARBP1Q13395 1621 aaKnown RBP20.02■□□□□ 0.8
GTF2F1-201ENST00000394456 CTTNBP2Q8WZ74 1663 aa20.01■□□□□ 0.79
GTF2F1-201ENST00000394456 ITGAEP38570 1179 aa20■□□□□ 0.79
GTF2F1-201ENST00000394456 MRC2Q9UBG0 1479 aa19.99■□□□□ 0.79
GTF2F1-201ENST00000394456 CENPBP07199 599 aaPredicted RBP19.98■□□□□ 0.79
GTF2F1-201ENST00000394456 DHX57Q6P158 1386 aaKnown RBP19.96■□□□□ 0.79
GTF2F1-201ENST00000394456 FHOD3Q2V2M9 1422 aa19.95■□□□□ 0.78
GTF2F1-201ENST00000394456 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.783e-6■■□□□ 12.6
GTF2F1-201ENST00000394456 ATP1B4Q9UN42 357 aaPredicted RBP19.92■□□□□ 0.78
GTF2F1-201ENST00000394456 PBRM1Q86U86 1689 aa19.91■□□□□ 0.78
GTF2F1-201ENST00000394456 PCF11O94913 1555 aaKnown RBP19.91■□□□□ 0.78
GTF2F1-201ENST00000394456 TIAM1Q13009 1591 aa19.91■□□□□ 0.78
GTF2F1-201ENST00000394456 FHAD1B1AJZ9 1412 aa19.88■□□□□ 0.77
GTF2F1-201ENST00000394456 EFCAB5A4FU69 1503 aa19.87■□□□□ 0.77
GTF2F1-201ENST00000394456 RRBP1Q9P2E9 1410 aaKnown RBP19.85■□□□□ 0.77
GTF2F1-201ENST00000394456 ERCC6Q03468 1493 aa19.85■□□□□ 0.77
GTF2F1-201ENST00000394456 WDR62O43379 1518 aa19.84■□□□□ 0.77
GTF2F1-201ENST00000394456 ZNF608Q9ULD9 1512 aaPredicted RBP19.84■□□□□ 0.77
GTF2F1-201ENST00000394456 CCNB3Q8WWL7 1395 aa19.82■□□□□ 0.76
GTF2F1-201ENST00000394456 LRRC9Q6ZRR7 1453 aa19.81■□□□□ 0.76
GTF2F1-201ENST00000394456 MAP3K1Q13233 1512 aa19.81■□□□□ 0.76
GTF2F1-201ENST00000394456 CFAP43Q8NDM7 1665 aa19.81■□□□□ 0.76
GTF2F1-201ENST00000394456 ADAMTS12P58397 1594 aa19.79■□□□□ 0.76
GTF2F1-201ENST00000394456 IFT140Q96RY7 1462 aa19.78■□□□□ 0.76
GTF2F1-201ENST00000394456 FYCO1Q9BQS8 1478 aa19.78■□□□□ 0.76
GTF2F1-201ENST00000394456 SAMD9Q5K651 1589 aa19.78■□□□□ 0.76
GTF2F1-201ENST00000394456 GRIN2BQ13224 1484 aa19.77■□□□□ 0.76
GTF2F1-201ENST00000394456 CASKIN1Q8WXD9 1431 aa19.76■□□□□ 0.75
GTF2F1-201ENST00000394456 FMN1Q68DA7 1419 aa19.74■□□□□ 0.75
GTF2F1-201ENST00000394456 THOC2Q8NI27 1593 aaKnown RBP19.73■□□□□ 0.75
GTF2F1-201ENST00000394456 PHLDB1Q86UU1 1377 aa19.73■□□□□ 0.75
GTF2F1-201ENST00000394456 SNAPC4Q5SXM2 1469 aa19.72■□□□□ 0.75
GTF2F1-201ENST00000394456 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
GTF2F1-201ENST00000394456 RAB3GAP2Q9H2M9 1393 aa19.7■□□□□ 0.74
GTF2F1-201ENST00000394456 PELP1Q8IZL8 1130 aaKnown RBP19.7■□□□□ 0.74
GTF2F1-201ENST00000394456 CLSPNQ9HAW4 1339 aa19.7■□□□□ 0.74
GTF2F1-201ENST00000394456 LRRIQ1Q96JM4 1722 aa19.7■□□□□ 0.74
GTF2F1-201ENST00000394456 FAM50AQ14320 339 aaKnown RBP19.69■□□□□ 0.74
GTF2F1-201ENST00000394456 IQGAP2Q13576 1575 aa19.69■□□□□ 0.74
GTF2F1-201ENST00000394456 SIN3AQ96ST3 1273 aa19.62■□□□□ 0.73
GTF2F1-201ENST00000394456 MAPKBP1O60336 1514 aa19.61■□□□□ 0.73
GTF2F1-201ENST00000394456 MTUS2Q5JR59 1369 aa19.6■□□□□ 0.73
GTF2F1-201ENST00000394456 GRIN2AQ12879 1464 aa19.58■□□□□ 0.72
GTF2F1-201ENST00000394456 KCNH8Q96L42 1107 aa19.56■□□□□ 0.72
GTF2F1-201ENST00000394456 FBLN2P98095 1184 aa19.55■□□□□ 0.72
GTF2F1-201ENST00000394456 SETD5Q9C0A6 1442 aa19.55■□□□□ 0.72
GTF2F1-201ENST00000394456 ARID3CA6NKF2 412 aa19.55■□□□□ 0.72
GTF2F1-201ENST00000394456 UGGT2Q9NYU1 1516 aa19.53■□□□□ 0.72
GTF2F1-201ENST00000394456 KIAA0586Q9BVV6 1533 aa19.52■□□□□ 0.72
GTF2F1-201ENST00000394456 CHMP7Q8WUX9 453 aaPredicted RBP19.52■□□□□ 0.72
GTF2F1-201ENST00000394456 MAGI1Q96QZ7 1491 aaPredicted RBP19.51■□□□□ 0.71
GTF2F1-201ENST00000394456 HIRIP3Q9BW71 556 aaPredicted RBP19.51■□□□□ 0.71
GTF2F1-201ENST00000394456 HECW1Q76N89 1606 aa19.5■□□□□ 0.71
GTF2F1-201ENST00000394456 MAGI3Q5TCQ9 1506 aa19.5■□□□□ 0.71
GTF2F1-201ENST00000394456 FGD6Q6ZV73 1430 aa19.5■□□□□ 0.71
GTF2F1-201ENST00000394456 NCOA2Q15596 1464 aa19.49■□□□□ 0.71
GTF2F1-201ENST00000394456 SUPT6HQ7KZ85 1726 aaKnown RBP19.48■□□□□ 0.71
GTF2F1-201ENST00000394456 KIAA0556O60303 1618 aa19.48■□□□□ 0.71
GTF2F1-201ENST00000394456 CDK13Q14004 1512 aaKnown RBP19.48■□□□□ 0.71
GTF2F1-201ENST00000394456 DISP1Q96F81 1524 aa19.48■□□□□ 0.71
GTF2F1-201ENST00000394456 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
GTF2F1-201ENST00000394456 EHBP1L1Q8N3D4 1523 aa19.47■□□□□ 0.71
GTF2F1-201ENST00000394456 CEP170Q5SW79 1584 aa19.47■□□□□ 0.71
GTF2F1-201ENST00000394456 CCDC18Q5T9S5 1454 aa19.47■□□□□ 0.71
GTF2F1-201ENST00000394456 EPRSP07814 1512 aaKnown RBP19.46■□□□□ 0.71
GTF2F1-201ENST00000394456 MYOM3Q5VTT5 1437 aa19.42■□□□□ 0.7
GTF2F1-201ENST00000394456 DDX10Q13206 875 aaKnown RBP19.41■□□□□ 0.7
GTF2F1-201ENST00000394456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.41■□□□□ 0.7
GTF2F1-201ENST00000394456 PTPRKQ15262 1439 aa19.38■□□□□ 0.69
GTF2F1-201ENST00000394456 ARHGEF11O15085 1522 aa19.37■□□□□ 0.69
GTF2F1-201ENST00000394456 PTPN23Q9H3S7 1636 aa19.36■□□□□ 0.69
GTF2F1-201ENST00000394456 RAPGEF6Q8TEU7 1601 aa19.36■□□□□ 0.69
GTF2F1-201ENST00000394456 NUP160Q12769 1436 aa19.35■□□□□ 0.69
GTF2F1-201ENST00000394456 NUP153P49790 1475 aaKnown RBP19.35■□□□□ 0.69
GTF2F1-201ENST00000394456 JPH4Q96JJ6 628 aa19.33■□□□□ 0.68
GTF2F1-201ENST00000394456 SUPT16HQ9Y5B9 1047 aaKnown RBP19.32■□□□□ 0.68
GTF2F1-201ENST00000394456 PLB1Q6P1J6 1458 aa19.31■□□□□ 0.68
GTF2F1-201ENST00000394456 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
GTF2F1-201ENST00000394456 CARMIL2Q6F5E8 1435 aa19.27■□□□□ 0.68
GTF2F1-201ENST00000394456 CHIC2Q9UKJ5 165 aa19.27■□□□□ 0.67
GTF2F1-201ENST00000394456 HFM1A2PYH4 1435 aa19.25■□□□□ 0.67
GTF2F1-201ENST00000394456 TCOF1Q13428 1488 aaKnown RBP19.24■□□□□ 0.67
GTF2F1-201ENST00000394456 CHD1O14646 1710 aa19.24■□□□□ 0.67
GTF2F1-201ENST00000394456 NAIPQ13075 1403 aa19.23■□□□□ 0.67
GTF2F1-201ENST00000394456 RRP7BPQ9NSQ0 103 aa19.23■□□□□ 0.67
GTF2F1-201ENST00000394456 PRG4Q92954 1404 aaPredicted RBP19.22■□□□□ 0.67
GTF2F1-201ENST00000394456 CDK11AQ9UQ88 783 aaPredicted RBP19.21■□□□□ 0.67
GTF2F1-201ENST00000394456 MIA2Q96PC5 1412 aa19.2■□□□□ 0.66
GTF2F1-201ENST00000394456 ZNF644Q9H582 1327 aaPredicted RBP19.18■□□□□ 0.66
GTF2F1-201ENST00000394456 TONSLQ96HA7 1378 aa19.17■□□□□ 0.66
GTF2F1-201ENST00000394456 BCANQ96GW7 911 aa19.16■□□□□ 0.66
GTF2F1-201ENST00000394456 TROQ12816 1431 aaPredicted RBP19.16■□□□□ 0.66
GTF2F1-201ENST00000394456 KIF14Q15058 1648 aa19.16■□□□□ 0.66
GTF2F1-201ENST00000394456 UACAQ9BZF9 1416 aa19.15■□□□□ 0.66
GTF2F1-201ENST00000394456 GCC2Q8IWJ2 1684 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms