RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 NISCHQ9Y2I1 1504 aa28.72■■■□□ 2.19
GTF2F1-201ENST00000394456 CCDC180Q9P1Z9 1646 aa24.71■■□□□ 1.55
GTF2F1-201ENST00000394456 ZCCHC6Q5VYS8 1495 aaKnown RBP24.2■■□□□ 1.46
GTF2F1-201ENST00000394456 SHROOM4Q9ULL8 1493 aa24.14■■□□□ 1.45
GTF2F1-201ENST00000394456 DCAF8L2P0C7V8 631 aa23.93■■□□□ 1.42
GTF2F1-201ENST00000394456 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
GTF2F1-201ENST00000394456 DCAF1Q9Y4B6 1507 aa23.57■■□□□ 1.36
GTF2F1-201ENST00000394456 ABCC9O60706 1549 aa23.27■■□□□ 1.32
GTF2F1-201ENST00000394456 MYO15BQ96JP2 1530 aa23.06■■□□□ 1.28
GTF2F1-201ENST00000394456 SCRIBQ14160 1630 aa23.06■■□□□ 1.28
GTF2F1-201ENST00000394456 NACADO15069 1562 aa22.92■■□□□ 1.26
GTF2F1-201ENST00000394456 CHIC1Q5VXU3 224 aa22.88■■□□□ 1.25
GTF2F1-201ENST00000394456 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
GTF2F1-201ENST00000394456 RSF1Q96T23 1441 aaPredicted RBP22.51■■□□□ 1.19
GTF2F1-201ENST00000394456 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
GTF2F1-201ENST00000394456 UNC13AQ9UPW8 1703 aa22.39■■□□□ 1.17
GTF2F1-201ENST00000394456 LOC105371045A0A1W2PR82 267 aa22.36■■□□□ 1.17
GTF2F1-201ENST00000394456 MROH2BQ7Z745 1585 aa22.31■■□□□ 1.16
GTF2F1-201ENST00000394456 PCGF6Q9BYE7 350 aa22.28■■□□□ 1.16
GTF2F1-201ENST00000394456 WIZO95785 1651 aa22.19■■□□□ 1.14
GTF2F1-201ENST00000394456 HRCP23327 699 aa22.16■■□□□ 1.14
GTF2F1-201ENST00000394456 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.13
GTF2F1-201ENST00000394456 BAZ1AQ9NRL2 1556 aaPredicted RBP22.11■■□□□ 1.13
GTF2F1-201ENST00000394456 BICRAQ9NZM4 1560 aa22.07■■□□□ 1.12
GTF2F1-201ENST00000394456 SMARCA4P51532 1647 aa22■■□□□ 1.11
GTF2F1-201ENST00000394456 PPARGC1BQ86YN6 1023 aaKnown RBP21.98■■□□□ 1.11
GTF2F1-201ENST00000394456 FAM9AQ8IZU1 332 aaPredicted RBP21.9■■□□□ 1.1
GTF2F1-201ENST00000394456 EHMT2Q96KQ7 1210 aa21.87■■□□□ 1.09
GTF2F1-201ENST00000394456 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
GTF2F1-201ENST00000394456 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
GTF2F1-201ENST00000394456 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
GTF2F1-201ENST00000394456 SMARCA2P51531 1590 aa21.69■■□□□ 1.06
GTF2F1-201ENST00000394456 EIF4G1Q04637 1599 aaKnown RBP21.66■■□□□ 1.06
GTF2F1-201ENST00000394456 TRIM26Q12899 539 aaPredicted RBP21.65■■□□□ 1.06
GTF2F1-201ENST00000394456 PEG3Q9GZU2 1588 aa21.59■■□□□ 1.05
GTF2F1-201ENST00000394456 ATAD2BQ9ULI0 1458 aa21.53■■□□□ 1.04
GTF2F1-201ENST00000394456 ABCC8Q09428 1581 aa21.5■■□□□ 1.03
GTF2F1-201ENST00000394456 BAZ1BQ9UIG0 1483 aaKnown RBP21.46■■□□□ 1.03
GTF2F1-201ENST00000394456 NCAPD3P42695 1498 aa21.18■□□□□ 0.98
GTF2F1-201ENST00000394456 HMGXB3Q12766 1538 aa21.17■□□□□ 0.98
GTF2F1-201ENST00000394456 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.98
GTF2F1-201ENST00000394456 SOGA1O94964 1423 aa21.17■□□□□ 0.98
GTF2F1-201ENST00000394456 TTBK1Q5TCY1 1321 aaPredicted RBP21.13■□□□□ 0.97
GTF2F1-201ENST00000394456 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
GTF2F1-201ENST00000394456 RUSC2Q8N2Y8 1516 aa21.1■□□□□ 0.97
GTF2F1-201ENST00000394456 ZEB1P37275 1124 aaPredicted RBP21.02■□□□□ 0.96
GTF2F1-201ENST00000394456 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21■□□□□ 0.95
GTF2F1-201ENST00000394456 CC2D2AQ9P2K1 1620 aa20.98■□□□□ 0.95
GTF2F1-201ENST00000394456 CSRNP3Q8WYN3 585 aa20.98■□□□□ 0.95
GTF2F1-201ENST00000394456 EEA1Q15075 1411 aa20.96■□□□□ 0.95
GTF2F1-201ENST00000394456 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
GTF2F1-201ENST00000394456 CEP162Q5TB80 1403 aa20.89■□□□□ 0.93
GTF2F1-201ENST00000394456 CFTRP13569 1480 aa20.88■□□□□ 0.93
GTF2F1-201ENST00000394456 UBTFP17480 764 aaKnown RBP20.86■□□□□ 0.93
GTF2F1-201ENST00000394456 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
GTF2F1-201ENST00000394456 CCER1Q8TC90 406 aaPredicted RBP20.83■□□□□ 0.92
GTF2F1-201ENST00000394456 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
GTF2F1-201ENST00000394456 TNIKQ9UKE5 1360 aa20.81■□□□□ 0.92
GTF2F1-201ENST00000394456 CUX1P39880 1505 aa20.8■□□□□ 0.92
GTF2F1-201ENST00000394456 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
GTF2F1-201ENST00000394456 CEP164Q9UPV0 1460 aa20.75■□□□□ 0.91
GTF2F1-201ENST00000394456 CADPSQ9ULU8 1353 aa20.74■□□□□ 0.91
GTF2F1-201ENST00000394456 KIF21BO75037 1637 aa20.74■□□□□ 0.91
GTF2F1-201ENST00000394456 RAPGEF2Q9Y4G8 1499 aa20.68■□□□□ 0.9
GTF2F1-201ENST00000394456 RANGAP1P46060 587 aaPredicted RBP20.66■□□□□ 0.9
GTF2F1-201ENST00000394456 NESP48681 1621 aa20.59■□□□□ 0.89
GTF2F1-201ENST00000394456 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
GTF2F1-201ENST00000394456 KIF27Q86VH2 1401 aa20.56■□□□□ 0.88
GTF2F1-201ENST00000394456 CLIP1P30622 1438 aa20.56■□□□□ 0.88
GTF2F1-201ENST00000394456 SCAF1Q9H7N4 1312 aaKnown RBP20.55■□□□□ 0.88
GTF2F1-201ENST00000394456 DNAJC5BQ9UF47 199 aa20.55■□□□□ 0.88
GTF2F1-201ENST00000394456 PRXQ9BXM0 1461 aa20.52■□□□□ 0.88
GTF2F1-201ENST00000394456 FGD5Q6ZNL6 1462 aa20.51■□□□□ 0.87
GTF2F1-201ENST00000394456 HNRNPUL2Q1KMD3 747 aaKnown RBP20.5■□□□□ 0.87
GTF2F1-201ENST00000394456 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
GTF2F1-201ENST00000394456 CUX2O14529 1486 aa20.49■□□□□ 0.87
GTF2F1-201ENST00000394456 DIEXFQ68CQ4 756 aaKnown RBP20.4■□□□□ 0.86
GTF2F1-201ENST00000394456 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
GTF2F1-201ENST00000394456 LAMC3Q9Y6N6 1575 aa20.4■□□□□ 0.86
GTF2F1-201ENST00000394456 VPS8Q8N3P4 1428 aa20.39■□□□□ 0.85
GTF2F1-201ENST00000394456 TOPBP1Q92547 1522 aa20.38■□□□□ 0.85
GTF2F1-201ENST00000394456 IGF1RP08069 1367 aa20.37■□□□□ 0.85
GTF2F1-201ENST00000394456 RAD54L2Q9Y4B4 1467 aa20.36■□□□□ 0.85
GTF2F1-201ENST00000394456 POLA1P09884 1462 aaPredicted RBP20.34■□□□□ 0.85
GTF2F1-201ENST00000394456 NEUROD1Q13562 356 aa20.33■□□□□ 0.84
GTF2F1-201ENST00000394456 URB2Q14146 1524 aaKnown RBP20.3■□□□□ 0.84
GTF2F1-201ENST00000394456 ARAP1Q96P48 1450 aa20.29■□□□□ 0.84
GTF2F1-201ENST00000394456 CARMIL1Q5VZK9 1371 aa20.28■□□□□ 0.84
GTF2F1-201ENST00000394456 KIF21AQ7Z4S6 1674 aa20.28■□□□□ 0.84
GTF2F1-201ENST00000394456 APLP2Q06481 763 aa20.27■□□□□ 0.84
GTF2F1-201ENST00000394456 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
GTF2F1-201ENST00000394456 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
GTF2F1-201ENST00000394456 ACIN1Q9UKV3 1341 aaKnown RBP20.23■□□□□ 0.83
GTF2F1-201ENST00000394456 ZNF316A6NFI3 1004 aaPredicted RBP20.2■□□□□ 0.82
GTF2F1-201ENST00000394456 KANK4Q5T7N3 995 aaPredicted RBP20.2■□□□□ 0.82
GTF2F1-201ENST00000394456 ARHGAP35Q9NRY4 1499 aa20.2■□□□□ 0.82
GTF2F1-201ENST00000394456 WDR97A6NE52 1622 aa20.16■□□□□ 0.82
GTF2F1-201ENST00000394456 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
GTF2F1-201ENST00000394456 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
GTF2F1-201ENST00000394456 CUL7Q14999 1698 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms