RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 YBX3P16989 372 aaKnown RBP eCLIP14.35□□□□□ -0.113e-13■■■■□ 19.7
GTF2F1-201ENST00000394456 DDX3XO00571 662 aaKnown RBP eCLIP14.73□□□□□ -0.056e-11■■■□□ 18.5
GTF2F1-201ENST00000394456 PABPC4Q13310 644 aaKnown RBP eCLIP14.86□□□□□ -0.031e-10■■■□□ 15.1
GTF2F1-201ENST00000394456 SF3A3Q12874 501 aaKnown RBP eCLIP14.62□□□□□ -0.071e-9■■■■□ 24.7
GTF2F1-201ENST00000394456 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.34□□□□□ -0.116e-9■□□□□ 10.2
GTF2F1-201ENST00000394456 WDR43Q15061 677 aaKnown RBP eCLIP17.81■□□□□ 0.447e-9■■■□□ 16.9
GTF2F1-201ENST00000394456 G3BP1Q13283 466 aaKnown RBP eCLIP16.17■□□□□ 0.181e-8■■■■■ 33.6
GTF2F1-201ENST00000394456 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.42□□□□□ -0.262e-8■■■■■ 31.3
GTF2F1-201ENST00000394456 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.64□□□□□ -0.073e-8■■■■■ 30.2
GTF2F1-201ENST00000394456 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.74□□□□□ -0.053e-8■■■■■ 86.5
GTF2F1-201ENST00000394456 METAP2P50579 478 aaKnown RBP eCLIP15.64■□□□□ 0.093e-8■■■■■ 26.8
GTF2F1-201ENST00000394456 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.6□□□□□ -0.398e-8■■□□□ 11.8
GTF2F1-201ENST00000394456 UPF1Q92900 1129 aaKnown RBP eCLIP14.4□□□□□ -0.19e-8■■■■□ 19.8
GTF2F1-201ENST00000394456 TRA2AQ13595 282 aaKnown RBP eCLIP11.84□□□□□ -0.511e-7■■■■□ 26.4
GTF2F1-201ENST00000394456 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.563e-7■■■■□ 20
GTF2F1-201ENST00000394456 ZNF622Q969S3 477 aaKnown RBP eCLIP15.16■□□□□ 0.024e-7■■■□□ 18.3
GTF2F1-201ENST00000394456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.3■□□□□ 0.25e-7■■■■■ 31.6
GTF2F1-201ENST00000394456 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.39■□□□□ 0.055e-7■■■■□ 20.2
GTF2F1-201ENST00000394456 SRSF1Q07955 248 aaKnown RBP eCLIP10.29□□□□□ -0.767e-7■■■□□ 14.9
GTF2F1-201ENST00000394456 PUM1Q14671 1186 aaKnown RBP eCLIP12.87□□□□□ -0.357e-7■■□□□ 13.4
GTF2F1-201ENST00000394456 PPIGQ13427 754 aaKnown RBP eCLIP13.04□□□□□ -0.328e-7■■□□□ 12.6
GTF2F1-201ENST00000394456 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.42□□□□□ -0.742e-6■■■□□ 18.9
GTF2F1-201ENST00000394456 U2AF2P26368 475 aaKnown RBP eCLIP15.65■□□□□ 0.13e-6■■■□□ 19.1
GTF2F1-201ENST00000394456 AQRO60306 1485 aaKnown RBP eCLIP19.92■□□□□ 0.783e-6■■□□□ 12.6
GTF2F1-201ENST00000394456 ILF3Q12906 894 aaKnown RBP eCLIP12.46□□□□□ -0.415e-6■■■■□ 20
GTF2F1-201ENST00000394456 RBFOX2O43251 390 aaKnown RBP eCLIP11.1□□□□□ -0.631e-5■■■■□ 20.3
Retrieved 26 of 26 RNA–protein pairs in 101.4 ms