RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 CUL7Q14999 1698 aa27.47■■□□□ 1.99
CHMP3-202ENST00000393773 AEBP2Q6ZN18 517 aaPredicted RBP27.46■■□□□ 1.99
CHMP3-202ENST00000393773 MAPKBP1O60336 1514 aa27.45■■□□□ 1.98
CHMP3-202ENST00000393773 JPH4Q96JJ6 628 aa27.44■■□□□ 1.98
CHMP3-202ENST00000393773 DIP2BQ9P265 1576 aa27.43■■□□□ 1.98
CHMP3-202ENST00000393773 ABCC10Q5T3U5 1492 aa27.38■■□□□ 1.97
CHMP3-202ENST00000393773 KIAA0586Q9BVV6 1533 aa27.36■■□□□ 1.97
CHMP3-202ENST00000393773 KIF27Q86VH2 1401 aa27.32■■□□□ 1.96
CHMP3-202ENST00000393773 IGF1RP08069 1367 aa27.3■■□□□ 1.96
CHMP3-202ENST00000393773 TSPOAP1O95153 1857 aa27.23■■□□□ 1.95
CHMP3-202ENST00000393773 FAM69CQ0P6D2 419 aa27.21■■□□□ 1.95
CHMP3-202ENST00000393773 KDM6BO15054 1643 aa27.2■■□□□ 1.95
CHMP3-202ENST00000393773 NPM1P06748 294 aaKnown RBP eCLIP27.17■■□□□ 1.94
CHMP3-202ENST00000393773 IQGAP2Q13576 1575 aa27.16■■□□□ 1.94
CHMP3-202ENST00000393773 CARMIL1Q5VZK9 1371 aa27.11■■□□□ 1.93
CHMP3-202ENST00000393773 PPRC1Q5VV67 1664 aaKnown RBP27.1■■□□□ 1.93
CHMP3-202ENST00000393773 ABCC2Q92887 1545 aa27.08■■□□□ 1.93
CHMP3-202ENST00000393773 PTPRGP23470 1445 aa27.07■■□□□ 1.92
CHMP3-202ENST00000393773 TNIKQ9UKE5 1360 aa27.04■■□□□ 1.92
CHMP3-202ENST00000393773 CARMIL2Q6F5E8 1435 aa27.04■■□□□ 1.92
CHMP3-202ENST00000393773 GLI2P10070 1586 aa27.02■■□□□ 1.92
CHMP3-202ENST00000393773 DISP1Q96F81 1524 aa27.02■■□□□ 1.92
CHMP3-202ENST00000393773 UHRF1BP1LA0JNW5 1464 aa27.01■■□□□ 1.91
CHMP3-202ENST00000393773 ASXL2Q76L83 1435 aa26.98■■□□□ 1.91
CHMP3-202ENST00000393773 UGGT2Q9NYU1 1516 aa26.95■■□□□ 1.91
CHMP3-202ENST00000393773 PLB1Q6P1J6 1458 aa26.95■■□□□ 1.91
CHMP3-202ENST00000393773 KIAA0556O60303 1618 aa26.95■■□□□ 1.91
CHMP3-202ENST00000393773 ZCCHC11Q5TAX3 1644 aaKnown RBP26.93■■□□□ 1.9
CHMP3-202ENST00000393773 MAP3K4Q9Y6R4 1608 aa26.93■■□□□ 1.9
CHMP3-202ENST00000393773 UACAQ9BZF9 1416 aa26.91■■□□□ 1.9
CHMP3-202ENST00000393773 CTTNBP2Q8WZ74 1663 aa26.91■■□□□ 1.9
CHMP3-202ENST00000393773 RAPGEF2Q9Y4G8 1499 aa26.9■■□□□ 1.9
CHMP3-202ENST00000393773 KDM5BQ9UGL1 1544 aa26.9■■□□□ 1.9
CHMP3-202ENST00000393773 TTBK1Q5TCY1 1321 aaPredicted RBP26.9■■□□□ 1.9
CHMP3-202ENST00000393773 KDM4FA0A1W2PPD8 638 aa26.88■■□□□ 1.89
CHMP3-202ENST00000393773 EPRSP07814 1512 aaKnown RBP26.85■■□□□ 1.89
CHMP3-202ENST00000393773 COL17A1Q9UMD9 1497 aaPredicted RBP26.75■■□□□ 1.87
CHMP3-202ENST00000393773 ADGRL1O94910 1474 aa26.73■■□□□ 1.87
CHMP3-202ENST00000393773 TEX14Q8IWB6 1497 aa26.73■■□□□ 1.87
CHMP3-202ENST00000393773 WDR7Q9Y4E6 1490 aa26.71■■□□□ 1.87
CHMP3-202ENST00000393773 ABCA8O94911 1581 aa26.69■■□□□ 1.86
CHMP3-202ENST00000393773 CFAP43Q8NDM7 1665 aa26.68■■□□□ 1.86
CHMP3-202ENST00000393773 GOLGA3Q08378 1498 aa26.64■■□□□ 1.86
CHMP3-202ENST00000393773 PRXQ9BXM0 1461 aa26.61■■□□□ 1.85
CHMP3-202ENST00000393773 MAGI3Q5TCQ9 1506 aa26.57■■□□□ 1.84
CHMP3-202ENST00000393773 HECW2Q9P2P5 1572 aa26.49■■□□□ 1.83
CHMP3-202ENST00000393773 CD109Q6YHK3 1445 aa26.48■■□□□ 1.83
CHMP3-202ENST00000393773 KIF21BO75037 1637 aa26.46■■□□□ 1.83
CHMP3-202ENST00000393773 SAMD9Q5K651 1589 aa26.46■■□□□ 1.83
CHMP3-202ENST00000393773 ABCA9Q8IUA7 1624 aa26.41■■□□□ 1.82
CHMP3-202ENST00000393773 ARAP3Q8WWN8 1544 aa26.37■■□□□ 1.81
CHMP3-202ENST00000393773 RAPGEF6Q8TEU7 1601 aa26.36■■□□□ 1.81
CHMP3-202ENST00000393773 ATP10BO94823 1461 aa26.36■■□□□ 1.81
CHMP3-202ENST00000393773 KCNH8Q96L42 1107 aa26.35■■□□□ 1.81
CHMP3-202ENST00000393773 ILDR1Q86SU0 546 aaPredicted RBP26.27■■□□□ 1.8
CHMP3-202ENST00000393773 FRMPD1Q5SYB0 1578 aa26.27■■□□□ 1.8
CHMP3-202ENST00000393773 ADAMTSL3P82987 1691 aa26.24■■□□□ 1.79
CHMP3-202ENST00000393773 ARID3CA6NKF2 412 aa26.23■■□□□ 1.79
CHMP3-202ENST00000393773 P3H3Q8IVL6 736 aa26.22■■□□□ 1.79
CHMP3-202ENST00000393773 NUP153P49790 1475 aaKnown RBP26.22■■□□□ 1.79
CHMP3-202ENST00000393773 NEO1Q92859 1461 aa26.21■■□□□ 1.79
CHMP3-202ENST00000393773 PHLDB1Q86UU1 1377 aa26.19■■□□□ 1.78
CHMP3-202ENST00000393773 BCORL1Q5H9F3 1711 aa26.17■■□□□ 1.78
CHMP3-202ENST00000393773 CSRNP3Q8WYN3 585 aa26.15■■□□□ 1.78
CHMP3-202ENST00000393773 RICTORQ6R327 1708 aa26.14■■□□□ 1.78
CHMP3-202ENST00000393773 ARHGEF40Q8TER5 1519 aa26.13■■□□□ 1.77
CHMP3-202ENST00000393773 EEA1Q15075 1411 aa26.13■■□□□ 1.77
CHMP3-202ENST00000393773 FHOD3Q2V2M9 1422 aa26.13■■□□□ 1.77
CHMP3-202ENST00000393773 MADDQ8WXG6 1647 aa26.11■■□□□ 1.77
CHMP3-202ENST00000393773 FAM9AQ8IZU1 332 aaPredicted RBP26.11■■□□□ 1.77
CHMP3-202ENST00000393773 PTPRMP28827 1452 aa26.11■■□□□ 1.77
CHMP3-202ENST00000393773 CFAP74Q9C0B2 1584 aa26.09■■□□□ 1.77
CHMP3-202ENST00000393773 EFCAB5A4FU69 1503 aa26.09■■□□□ 1.77
CHMP3-202ENST00000393773 TTC37Q6PGP7 1564 aa26.07■■□□□ 1.76
CHMP3-202ENST00000393773 RAPGEF3O95398 923 aa26.05■■□□□ 1.76
CHMP3-202ENST00000393773 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.04■■□□□ 1.76
CHMP3-202ENST00000393773 ZMYM4Q5VZL5 1548 aa26.01■■□□□ 1.75
CHMP3-202ENST00000393773 RIMS1Q86UR5 1692 aaKnown RBP26.01■■□□□ 1.75
CHMP3-202ENST00000393773 SIGLEC1Q9BZZ2 1709 aa26.01■■□□□ 1.75
CHMP3-202ENST00000393773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.98■■□□□ 1.75
CHMP3-202ENST00000393773 HNRNPUL2Q1KMD3 747 aaKnown RBP25.98■■□□□ 1.75
CHMP3-202ENST00000393773 PCF11O94913 1555 aaKnown RBP25.98■■□□□ 1.75
CHMP3-202ENST00000393773 FANCAO15360 1455 aa25.98■■□□□ 1.75
CHMP3-202ENST00000393773 DENND4BO75064 1496 aaPredicted RBP25.98■■□□□ 1.75
CHMP3-202ENST00000393773 AKNAQ7Z591 1439 aa25.95■■□□□ 1.74
CHMP3-202ENST00000393773 CDK13Q14004 1512 aaKnown RBP25.94■■□□□ 1.74
CHMP3-202ENST00000393773 LMTK3Q96Q04 1460 aa25.93■■□□□ 1.74
CHMP3-202ENST00000393773 RANGAP1P46060 587 aaPredicted RBP25.93■■□□□ 1.74
CHMP3-202ENST00000393773 ZFYVE16Q7Z3T8 1539 aa25.91■■□□□ 1.74
CHMP3-202ENST00000393773 MYO5CQ9NQX4 1742 aa25.88■■□□□ 1.73
CHMP3-202ENST00000393773 HECW1Q76N89 1606 aa25.88■■□□□ 1.73
CHMP3-202ENST00000393773 PLEKHD1A6NEE1 506 aa25.87■■□□□ 1.73
CHMP3-202ENST00000393773 FER1L4A9Z1Z3 1794 aa25.87■■□□□ 1.73
CHMP3-202ENST00000393773 ARID4BQ4LE39 1312 aaPredicted RBP25.85■■□□□ 1.73
CHMP3-202ENST00000393773 YEATS2Q9ULM3 1422 aa25.84■■□□□ 1.73
CHMP3-202ENST00000393773 MAGI2Q86UL8 1455 aa25.83■■□□□ 1.73
CHMP3-202ENST00000393773 POGZQ7Z3K3 1410 aa25.82■■□□□ 1.72
CHMP3-202ENST00000393773 LRRIQ1Q96JM4 1722 aa25.82■■□□□ 1.72
CHMP3-202ENST00000393773 KIF14Q15058 1648 aa25.8■■□□□ 1.72
CHMP3-202ENST00000393773 PLCH2O75038 1416 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms