RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
CHMP3-202ENST00000393773 CCDC180Q9P1Z9 1646 aa35.54■■■■□ 3.28
CHMP3-202ENST00000393773 ABCC9O60706 1549 aa35.52■■■■□ 3.28
CHMP3-202ENST00000393773 RB1CC1Q8TDY2 1594 aa33.81■■■■□ 3
CHMP3-202ENST00000393773 NACADO15069 1562 aa33.51■■■□□ 2.96
CHMP3-202ENST00000393773 DNAJC5BQ9UF47 199 aa33.42■■■□□ 2.94
CHMP3-202ENST00000393773 UNC13AQ9UPW8 1703 aa33.24■■■□□ 2.91
CHMP3-202ENST00000393773 MYO15BQ96JP2 1530 aa33.02■■■□□ 2.88
CHMP3-202ENST00000393773 DCAF8L2P0C7V8 631 aa32.93■■■□□ 2.86
CHMP3-202ENST00000393773 PABPN1Q86U42 306 aaKnown RBP eCLIP32.91■■■□□ 2.86
CHMP3-202ENST00000393773 BICRAQ9NZM4 1560 aa32.9■■■□□ 2.86
CHMP3-202ENST00000393773 ZCCHC6Q5VYS8 1495 aaKnown RBP32.6■■■□□ 2.81
CHMP3-202ENST00000393773 DCAF1Q9Y4B6 1507 aa32.51■■■□□ 2.8
CHMP3-202ENST00000393773 SHROOM4Q9ULL8 1493 aa32.42■■■□□ 2.78
CHMP3-202ENST00000393773 SCRIBQ14160 1630 aa32.27■■■□□ 2.76
CHMP3-202ENST00000393773 CC2D2AQ9P2K1 1620 aa32.18■■■□□ 2.74
CHMP3-202ENST00000393773 EIF4G1Q04637 1599 aaKnown RBP32.07■■■□□ 2.72
CHMP3-202ENST00000393773 CECR2Q9BXF3 1484 aa32.03■■■□□ 2.72
CHMP3-202ENST00000393773 NCAPD3P42695 1498 aa30.88■■■□□ 2.53
CHMP3-202ENST00000393773 DNAJC5Q9H3Z4 198 aa30.82■■■□□ 2.52
CHMP3-202ENST00000393773 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
CHMP3-202ENST00000393773 ATAD2BQ9ULI0 1458 aa30.77■■■□□ 2.52
CHMP3-202ENST00000393773 CUX2O14529 1486 aa30.76■■■□□ 2.51
CHMP3-202ENST00000393773 HMGXB3Q12766 1538 aa30.75■■■□□ 2.51
CHMP3-202ENST00000393773 SMARCA2P51531 1590 aa30.71■■■□□ 2.51
CHMP3-202ENST00000393773 ERCC6Q03468 1493 aa30.66■■■□□ 2.5
CHMP3-202ENST00000393773 BAZ1AQ9NRL2 1556 aaPredicted RBP30.55■■■□□ 2.48
CHMP3-202ENST00000393773 PEG3Q9GZU2 1588 aa30.52■■■□□ 2.48
CHMP3-202ENST00000393773 NESP48681 1621 aa30.5■■■□□ 2.47
CHMP3-202ENST00000393773 BAZ1BQ9UIG0 1483 aaKnown RBP30.47■■■□□ 2.47
CHMP3-202ENST00000393773 THOC2Q8NI27 1593 aaKnown RBP30.38■■■□□ 2.45
CHMP3-202ENST00000393773 LAMC3Q9Y6N6 1575 aa30.31■■■□□ 2.44
CHMP3-202ENST00000393773 MROH2BQ7Z745 1585 aa30.29■■■□□ 2.44
CHMP3-202ENST00000393773 KIF21AQ7Z4S6 1674 aa30.25■■■□□ 2.43
CHMP3-202ENST00000393773 PDS5BQ9NTI5 1447 aa30■■■□□ 2.39
CHMP3-202ENST00000393773 WIZO95785 1651 aa29.98■■■□□ 2.39
CHMP3-202ENST00000393773 CADPSQ9ULU8 1353 aa29.88■■■□□ 2.37
CHMP3-202ENST00000393773 MRC2Q9UBG0 1479 aa29.85■■■□□ 2.37
CHMP3-202ENST00000393773 WDR62O43379 1518 aa29.85■■■□□ 2.37
CHMP3-202ENST00000393773 CEP164Q9UPV0 1460 aa29.67■■■□□ 2.34
CHMP3-202ENST00000393773 FANCD2Q9BXW9 1451 aa29.6■■■□□ 2.33
CHMP3-202ENST00000393773 TOP2AP11388 1531 aaKnown RBP29.57■■■□□ 2.32
CHMP3-202ENST00000393773 CFTRP13569 1480 aa29.56■■■□□ 2.32
CHMP3-202ENST00000393773 RSF1Q96T23 1441 aaPredicted RBP29.53■■■□□ 2.32
CHMP3-202ENST00000393773 PRDM2Q13029 1718 aa29.51■■■□□ 2.31
CHMP3-202ENST00000393773 URB2Q14146 1524 aaKnown RBP29.42■■■□□ 2.3
CHMP3-202ENST00000393773 TRIM41Q8WV44 630 aa29.32■■■□□ 2.28
CHMP3-202ENST00000393773 CCDC88BA6NC98 1476 aa29.15■■■□□ 2.26
CHMP3-202ENST00000393773 OSCARQ8IYS5 282 aa29.11■■■□□ 2.25
CHMP3-202ENST00000393773 IFT140Q96RY7 1462 aa29.07■■■□□ 2.24
CHMP3-202ENST00000393773 ZNF608Q9ULD9 1512 aaPredicted RBP29.06■■■□□ 2.24
CHMP3-202ENST00000393773 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
CHMP3-202ENST00000393773 RIMBP3CA6NJZ7 1639 aa29.03■■■□□ 2.24
CHMP3-202ENST00000393773 RIMBP3BA6NNM3 1639 aa29.03■■■□□ 2.24
CHMP3-202ENST00000393773 RIMBP3Q9UFD9 1639 aa29.03■■■□□ 2.24
CHMP3-202ENST00000393773 EIF4G3O43432 1585 aaKnown RBP29.01■■■□□ 2.24
CHMP3-202ENST00000393773 DNMBPQ6XZF7 1577 aa28.97■■■□□ 2.23
CHMP3-202ENST00000393773 ABCC8Q09428 1581 aa28.92■■■□□ 2.22
CHMP3-202ENST00000393773 TARBP1Q13395 1621 aaKnown RBP28.89■■■□□ 2.22
CHMP3-202ENST00000393773 CHD1O14646 1710 aa28.87■■■□□ 2.21
CHMP3-202ENST00000393773 ARHGEF11O15085 1522 aa28.86■■■□□ 2.21
CHMP3-202ENST00000393773 POLA1P09884 1462 aaPredicted RBP28.73■■■□□ 2.19
CHMP3-202ENST00000393773 AQRO60306 1485 aaKnown RBP eCLIP28.7■■■□□ 2.184e-6■■□□□ 13.9
CHMP3-202ENST00000393773 WDR97A6NE52 1622 aa28.6■■■□□ 2.17
CHMP3-202ENST00000393773 RAD54L2Q9Y4B4 1467 aa28.59■■■□□ 2.17
CHMP3-202ENST00000393773 ARAP1Q96P48 1450 aa28.57■■■□□ 2.16
CHMP3-202ENST00000393773 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
CHMP3-202ENST00000393773 CUX1P39880 1505 aa28.5■■■□□ 2.15
CHMP3-202ENST00000393773 SOGA1O94964 1423 aa28.49■■■□□ 2.15
CHMP3-202ENST00000393773 CLASP1Q7Z460 1538 aa28.48■■■□□ 2.15
CHMP3-202ENST00000393773 SNAPC4Q5SXM2 1469 aa28.48■■■□□ 2.15
CHMP3-202ENST00000393773 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.14
CHMP3-202ENST00000393773 CYB5RLQ6IPT4 315 aa28.43■■■□□ 2.14
CHMP3-202ENST00000393773 PBRM1Q86U86 1689 aa28.41■■■□□ 2.14
CHMP3-202ENST00000393773 MAGI1Q96QZ7 1491 aaPredicted RBP28.4■■■□□ 2.14
CHMP3-202ENST00000393773 FBLN2P98095 1184 aa28.4■■■□□ 2.14
CHMP3-202ENST00000393773 SYNJ1O43426 1573 aa28.38■■■□□ 2.13
CHMP3-202ENST00000393773 GRIN2BQ13224 1484 aa28.34■■■□□ 2.13
CHMP3-202ENST00000393773 SYNJ2O15056 1496 aa28.29■■■□□ 2.12
CHMP3-202ENST00000393773 ABCA5Q8WWZ7 1642 aa28.28■■■□□ 2.12
CHMP3-202ENST00000393773 GAPVD1Q14C86 1478 aa28.21■■■□□ 2.11
CHMP3-202ENST00000393773 ABCA10Q8WWZ4 1543 aa28.19■■■□□ 2.1
CHMP3-202ENST00000393773 CHMP7Q8WUX9 453 aaPredicted RBP28.18■■■□□ 2.1
CHMP3-202ENST00000393773 TRHP20396 242 aaPredicted RBP28.16■■■□□ 2.1
CHMP3-202ENST00000393773 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
CHMP3-202ENST00000393773 BIVM-ERCC5R4GMW8 1640 aa28.07■■■□□ 2.08
CHMP3-202ENST00000393773 GRIN2AQ12879 1464 aa28.02■■■□□ 2.08
CHMP3-202ENST00000393773 TOP2BQ02880 1626 aa28.01■■■□□ 2.07
CHMP3-202ENST00000393773 CEP170Q5SW79 1584 aa27.99■■■□□ 2.07
CHMP3-202ENST00000393773 ERCC6L2Q5T890 1561 aa27.99■■■□□ 2.07
CHMP3-202ENST00000393773 SHROOM2Q13796 1616 aa27.95■■■□□ 2.06
CHMP3-202ENST00000393773 WRNQ14191 1432 aaPredicted RBP eCLIP27.94■■■□□ 2.06
CHMP3-202ENST00000393773 NUP160Q12769 1436 aa27.93■■■□□ 2.06
CHMP3-202ENST00000393773 SUPT5HO00267 1087 aaKnown RBP27.85■■■□□ 2.05
CHMP3-202ENST00000393773 ERICH3Q5RHP9 1530 aa27.85■■■□□ 2.05
CHMP3-202ENST00000393773 FHAD1B1AJZ9 1412 aa27.83■■■□□ 2.05
CHMP3-202ENST00000393773 KIF13AQ9H1H9 1805 aa27.72■■■□□ 2.03
CHMP3-202ENST00000393773 RUSC2Q8N2Y8 1516 aa27.7■■■□□ 2.02
CHMP3-202ENST00000393773 PRG4Q92954 1404 aaPredicted RBP27.59■■■□□ 2.01
CHMP3-202ENST00000393773 ADCY10Q96PN6 1610 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms