RNA–Protein interactions for RNA: ENST00000389195.6

LTN1-203, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 2,714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-203ENST00000389195 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
LTN1-203ENST00000389195 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
LTN1-203ENST00000389195 TARBP1Q13395 1621 aaKnown RBP15.46■□□□□ 0.07
LTN1-203ENST00000389195 WDR97A6NE52 1622 aa15.44■□□□□ 0.06
LTN1-203ENST00000389195 ABCA5Q8WWZ7 1642 aa15.43■□□□□ 0.06
LTN1-203ENST00000389195 CUL7Q14999 1698 aa15.34■□□□□ 0.05
LTN1-203ENST00000389195 WDR62O43379 1518 aa15.33■□□□□ 0.05
LTN1-203ENST00000389195 CHMP7Q8WUX9 453 aaPredicted RBP15.33■□□□□ 0.05
LTN1-203ENST00000389195 FAM50AQ14320 339 aaKnown RBP15.33■□□□□ 0.04
LTN1-203ENST00000389195 SNAPC4Q5SXM2 1469 aa15.32■□□□□ 0.04
LTN1-203ENST00000389195 PBRM1Q86U86 1689 aa15.31■□□□□ 0.04
LTN1-203ENST00000389195 PCF11O94913 1555 aaKnown RBP15.31■□□□□ 0.04
LTN1-203ENST00000389195 GRIN2BQ13224 1484 aa15.3■□□□□ 0.04
LTN1-203ENST00000389195 IFT140Q96RY7 1462 aa15.3■□□□□ 0.04
LTN1-203ENST00000389195 ZEB1P37275 1124 aaPredicted RBP15.29■□□□□ 0.04
LTN1-203ENST00000389195 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
LTN1-203ENST00000389195 THOC2Q8NI27 1593 aaKnown RBP15.28■□□□□ 0.04
LTN1-203ENST00000389195 PHLDB1Q86UU1 1377 aa15.28■□□□□ 0.04
LTN1-203ENST00000389195 CTTNBP2Q8WZ74 1663 aa15.28■□□□□ 0.04
LTN1-203ENST00000389195 EIF4G3O43432 1585 aaKnown RBP15.26■□□□□ 0.03
LTN1-203ENST00000389195 TIAM1Q13009 1591 aa15.24■□□□□ 0.03
LTN1-203ENST00000389195 ADAMTS12P58397 1594 aa15.23■□□□□ 0.03
LTN1-203ENST00000389195 LRRC9Q6ZRR7 1453 aa15.23■□□□□ 0.03
LTN1-203ENST00000389195 CCNB3Q8WWL7 1395 aa15.22■□□□□ 0.03
LTN1-203ENST00000389195 CASKIN1Q8WXD9 1431 aa15.18■□□□□ 0.02
LTN1-203ENST00000389195 MTUS2Q5JR59 1369 aa15.18■□□□□ 0.02
LTN1-203ENST00000389195 FMN1Q68DA7 1419 aa15.17■□□□□ 0.02
LTN1-203ENST00000389195 GRIN2AQ12879 1464 aa15.17■□□□□ 0.02
LTN1-203ENST00000389195 IQGAP2Q13576 1575 aa15.16■□□□□ 0.02
LTN1-203ENST00000389195 EFCAB5A4FU69 1503 aa15.15■□□□□ 0.02
LTN1-203ENST00000389195 LRRIQ1Q96JM4 1722 aa15.15■□□□□ 0.02
LTN1-203ENST00000389195 RRBP1Q9P2E9 1410 aaKnown RBP15.15■□□□□ 0.02
LTN1-203ENST00000389195 JPH4Q96JJ6 628 aa15.15■□□□□ 0.02
LTN1-203ENST00000389195 SAMD9Q5K651 1589 aa15.14■□□□□ 0.01
LTN1-203ENST00000389195 CDK13Q14004 1512 aaKnown RBP15.14■□□□□ 0.01
LTN1-203ENST00000389195 FYCO1Q9BQS8 1478 aa15.13■□□□□ 0.01
LTN1-203ENST00000389195 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
LTN1-203ENST00000389195 CEP170Q5SW79 1584 aa15.11■□□□□ 0.01
LTN1-203ENST00000389195 MAGI3Q5TCQ9 1506 aa15.1■□□□□ 0.01
LTN1-203ENST00000389195 DISP1Q96F81 1524 aa15.09■□□□□ 0.01
LTN1-203ENST00000389195 SYNJ2O15056 1496 aa15.09■□□□□ 0.01
LTN1-203ENST00000389195 KIAA0586Q9BVV6 1533 aa15.08■□□□□ 0
LTN1-203ENST00000389195 RAB3GAP2Q9H2M9 1393 aa15.07■□□□□ 0
LTN1-203ENST00000389195 DHX57Q6P158 1386 aaKnown RBP15.06■□□□□ 0
LTN1-203ENST00000389195 PLB1Q6P1J6 1458 aa15.06■□□□□ 0
LTN1-203ENST00000389195 CFAP43Q8NDM7 1665 aa15.06■□□□□ 0
LTN1-203ENST00000389195 ZNF644Q9H582 1327 aaPredicted RBP15.05■□□□□ 0
LTN1-203ENST00000389195 MAGI1Q96QZ7 1491 aaPredicted RBP15.05■□□□□ -0
LTN1-203ENST00000389195 RRP7BPQ9NSQ0 103 aa15.04■□□□□ -0
LTN1-203ENST00000389195 NCOA2Q15596 1464 aa15.04■□□□□ -0
LTN1-203ENST00000389195 NEUROD1Q13562 356 aa15.03■□□□□ -0
LTN1-203ENST00000389195 MAP3K1Q13233 1512 aa15.03■□□□□ -0
LTN1-203ENST00000389195 SIN3AQ96ST3 1273 aa15.03■□□□□ -0
LTN1-203ENST00000389195 EPRSP07814 1512 aaKnown RBP15.03■□□□□ -0
LTN1-203ENST00000389195 PTPRKQ15262 1439 aa15.02■□□□□ -0
LTN1-203ENST00000389195 ZNF777Q9ULD5 760 aaPredicted RBP15.01□□□□□ -0.01
LTN1-203ENST00000389195 UGGT2Q9NYU1 1516 aa15.01□□□□□ -0.01
LTN1-203ENST00000389195 KIAA0556O60303 1618 aa15□□□□□ -0.01
LTN1-203ENST00000389195 FGD6Q6ZV73 1430 aa15□□□□□ -0.01
LTN1-203ENST00000389195 PRG4Q92954 1404 aaPredicted RBP14.98□□□□□ -0.01
LTN1-203ENST00000389195 NUP153P49790 1475 aaKnown RBP14.98□□□□□ -0.01
LTN1-203ENST00000389195 NUP160Q12769 1436 aa14.96□□□□□ -0.01
LTN1-203ENST00000389195 SETD5Q9C0A6 1442 aa14.95□□□□□ -0.02
LTN1-203ENST00000389195 MYOM3Q5VTT5 1437 aa14.94□□□□□ -0.02
LTN1-203ENST00000389195 DIEXFQ68CQ4 756 aaKnown RBP14.93□□□□□ -0.02
LTN1-203ENST00000389195 ERCC6L2Q5T890 1561 aa14.92□□□□□ -0.02
LTN1-203ENST00000389195 HECW1Q76N89 1606 aa14.92□□□□□ -0.02
LTN1-203ENST00000389195 CHD1O14646 1710 aa14.92□□□□□ -0.02
LTN1-203ENST00000389195 FOXD1Q16676 465 aa14.91□□□□□ -0.02
LTN1-203ENST00000389195 CARMIL2Q6F5E8 1435 aa14.9□□□□□ -0.02
LTN1-203ENST00000389195 KCNH8Q96L42 1107 aa14.89□□□□□ -0.03
LTN1-203ENST00000389195 HIRIP3Q9BW71 556 aaPredicted RBP14.89□□□□□ -0.03
LTN1-203ENST00000389195 SUPT6HQ7KZ85 1726 aaKnown RBP14.89□□□□□ -0.03
LTN1-203ENST00000389195 RAPGEF6Q8TEU7 1601 aa14.89□□□□□ -0.03
LTN1-203ENST00000389195 ZNF316A6NFI3 1004 aaPredicted RBP14.88□□□□□ -0.03
LTN1-203ENST00000389195 EHBP1L1Q8N3D4 1523 aa14.88□□□□□ -0.03
LTN1-203ENST00000389195 CCDC18Q5T9S5 1454 aa14.88□□□□□ -0.03
LTN1-203ENST00000389195 TRIM52Q96A61 297 aa14.88□□□□□ -0.03
LTN1-203ENST00000389195 PTPRGP23470 1445 aa14.87□□□□□ -0.03
LTN1-203ENST00000389195 CFDP1Q9UEE9 299 aaPredicted RBP14.86□□□□□ -0.03
LTN1-203ENST00000389195 CDK11AQ9UQ88 783 aaPredicted RBP14.86□□□□□ -0.03
LTN1-203ENST00000389195 PTPN23Q9H3S7 1636 aa14.85□□□□□ -0.03
LTN1-203ENST00000389195 PLEKHD1A6NEE1 506 aa14.85□□□□□ -0.03
LTN1-203ENST00000389195 MAPKBP1O60336 1514 aa14.85□□□□□ -0.03
LTN1-203ENST00000389195 KIF14Q15058 1648 aa14.83□□□□□ -0.04
LTN1-203ENST00000389195 ATP10BO94823 1461 aa14.83□□□□□ -0.04
LTN1-203ENST00000389195 ARHGEF11O15085 1522 aa14.81□□□□□ -0.04
LTN1-203ENST00000389195 NAIPQ13075 1403 aa14.81□□□□□ -0.04
LTN1-203ENST00000389195 HNRNPMP52272 730 aaKnown RBP eCLIP14.8□□□□□ -0.04
LTN1-203ENST00000389195 KDM6BO15054 1643 aa14.8□□□□□ -0.04
LTN1-203ENST00000389195 TROQ12816 1431 aaPredicted RBP14.78□□□□□ -0.04
LTN1-203ENST00000389195 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
LTN1-203ENST00000389195 MIER1Q8N108 512 aa14.75□□□□□ -0.05
LTN1-203ENST00000389195 YTHDC1Q96MU7 727 aaKnown RBP14.75□□□□□ -0.05
LTN1-203ENST00000389195 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.75□□□□□ -0.05
LTN1-203ENST00000389195 GPATCH8Q9UKJ3 1502 aaKnown RBP14.74□□□□□ -0.05
LTN1-203ENST00000389195 ABCC5O15440 1437 aa14.74□□□□□ -0.05
LTN1-203ENST00000389195 ABCA8O94911 1581 aa14.73□□□□□ -0.05
LTN1-203ENST00000389195 CLSPNQ9HAW4 1339 aa14.73□□□□□ -0.05
LTN1-203ENST00000389195 DAPK1P53355 1430 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms