RNA–Protein interactions for RNA: ENST00000389195.6

LTN1-203, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 2,714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-203ENST00000389195 NISCHQ9Y2I1 1504 aa22.14■■□□□ 1.13
LTN1-203ENST00000389195 DCAF8L2P0C7V8 631 aa19■□□□□ 0.63
LTN1-203ENST00000389195 SHROOM4Q9ULL8 1493 aa18.94■□□□□ 0.62
LTN1-203ENST00000389195 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
LTN1-203ENST00000389195 ZCCHC6Q5VYS8 1495 aaKnown RBP18.58■□□□□ 0.56
LTN1-203ENST00000389195 ABCC9O60706 1549 aa18.33■□□□□ 0.52
LTN1-203ENST00000389195 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
LTN1-203ENST00000389195 DCAF1Q9Y4B6 1507 aa17.94■□□□□ 0.46
LTN1-203ENST00000389195 SCRIBQ14160 1630 aa17.92■□□□□ 0.46
LTN1-203ENST00000389195 NACADO15069 1562 aa17.62■□□□□ 0.41
LTN1-203ENST00000389195 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
LTN1-203ENST00000389195 PABPN1Q86U42 306 aaKnown RBP eCLIP17.56■□□□□ 0.4
LTN1-203ENST00000389195 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
LTN1-203ENST00000389195 CECR2Q9BXF3 1484 aa17.49■□□□□ 0.39
LTN1-203ENST00000389195 RSF1Q96T23 1441 aaPredicted RBP17.41■□□□□ 0.38
LTN1-203ENST00000389195 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
LTN1-203ENST00000389195 MROH2BQ7Z745 1585 aa17.3■□□□□ 0.36
LTN1-203ENST00000389195 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
LTN1-203ENST00000389195 WIZO95785 1651 aa17.18■□□□□ 0.34
LTN1-203ENST00000389195 BICRAQ9NZM4 1560 aa17.12■□□□□ 0.33
LTN1-203ENST00000389195 EHMT2Q96KQ7 1210 aa17.07■□□□□ 0.32
LTN1-203ENST00000389195 LOC105371045A0A1W2PR82 267 aa17.05■□□□□ 0.32
LTN1-203ENST00000389195 FAM9AQ8IZU1 332 aaPredicted RBP17.02■□□□□ 0.31
LTN1-203ENST00000389195 BAZ1AQ9NRL2 1556 aaPredicted RBP16.98■□□□□ 0.31
LTN1-203ENST00000389195 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
LTN1-203ENST00000389195 SMARCA4P51532 1647 aa16.95■□□□□ 0.3
LTN1-203ENST00000389195 CCDC88BA6NC98 1476 aa16.81■□□□□ 0.28
LTN1-203ENST00000389195 TOP2AP11388 1531 aaKnown RBP16.74■□□□□ 0.27
LTN1-203ENST00000389195 SMARCA2P51531 1590 aa16.7■□□□□ 0.26
LTN1-203ENST00000389195 ABCC8Q09428 1581 aa16.7■□□□□ 0.26
LTN1-203ENST00000389195 ATAD2BQ9ULI0 1458 aa16.7■□□□□ 0.26
LTN1-203ENST00000389195 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
LTN1-203ENST00000389195 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
LTN1-203ENST00000389195 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
LTN1-203ENST00000389195 DNAJC5BQ9UF47 199 aa16.48■□□□□ 0.23
LTN1-203ENST00000389195 PCGF6Q9BYE7 350 aa16.47■□□□□ 0.23
LTN1-203ENST00000389195 PPARGC1BQ86YN6 1023 aaKnown RBP16.47■□□□□ 0.23
LTN1-203ENST00000389195 SOGA1O94964 1423 aa16.46■□□□□ 0.23
LTN1-203ENST00000389195 RUSC2Q8N2Y8 1516 aa16.44■□□□□ 0.22
LTN1-203ENST00000389195 NCAPD3P42695 1498 aa16.38■□□□□ 0.21
LTN1-203ENST00000389195 CC2D2AQ9P2K1 1620 aa16.36■□□□□ 0.21
LTN1-203ENST00000389195 WRNQ14191 1432 aaPredicted RBP eCLIP16.36■□□□□ 0.21
LTN1-203ENST00000389195 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
LTN1-203ENST00000389195 TTBK1Q5TCY1 1321 aaPredicted RBP16.33■□□□□ 0.2
LTN1-203ENST00000389195 SYNJ1O43426 1573 aa16.31■□□□□ 0.2
LTN1-203ENST00000389195 UBTFP17480 764 aaKnown RBP16.27■□□□□ 0.2
LTN1-203ENST00000389195 HMGXB3Q12766 1538 aa16.25■□□□□ 0.19
LTN1-203ENST00000389195 CSRNP3Q8WYN3 585 aa16.25■□□□□ 0.19
LTN1-203ENST00000389195 NESP48681 1621 aa16.18■□□□□ 0.18
LTN1-203ENST00000389195 CFTRP13569 1480 aa16.14■□□□□ 0.17
LTN1-203ENST00000389195 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
LTN1-203ENST00000389195 CUX1P39880 1505 aa16.11■□□□□ 0.17
LTN1-203ENST00000389195 TRIM26Q12899 539 aaPredicted RBP16.05■□□□□ 0.16
LTN1-203ENST00000389195 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
LTN1-203ENST00000389195 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
LTN1-203ENST00000389195 RAPGEF2Q9Y4G8 1499 aa16.02■□□□□ 0.15
LTN1-203ENST00000389195 FANCD2Q9BXW9 1451 aa15.98■□□□□ 0.15
LTN1-203ENST00000389195 TNIKQ9UKE5 1360 aa15.95■□□□□ 0.14
LTN1-203ENST00000389195 GOLGA3Q08378 1498 aa15.94■□□□□ 0.14
LTN1-203ENST00000389195 EEA1Q15075 1411 aa15.94■□□□□ 0.14
LTN1-203ENST00000389195 BIVM-ERCC5R4GMW8 1640 aa15.93■□□□□ 0.14
LTN1-203ENST00000389195 RAD54L2Q9Y4B4 1467 aa15.92■□□□□ 0.14
LTN1-203ENST00000389195 CUX2O14529 1486 aa15.91■□□□□ 0.14
LTN1-203ENST00000389195 FGD5Q6ZNL6 1462 aa15.91■□□□□ 0.14
LTN1-203ENST00000389195 HRCP23327 699 aa15.9■□□□□ 0.14
LTN1-203ENST00000389195 CEP164Q9UPV0 1460 aa15.89■□□□□ 0.13
LTN1-203ENST00000389195 KIF27Q86VH2 1401 aa15.86■□□□□ 0.13
LTN1-203ENST00000389195 CLIP1P30622 1438 aa15.84■□□□□ 0.13
LTN1-203ENST00000389195 P3H3Q8IVL6 736 aa15.82■□□□□ 0.12
LTN1-203ENST00000389195 IGF1RP08069 1367 aa15.82■□□□□ 0.12
LTN1-203ENST00000389195 TDRD9Q8NDG6 1382 aaKnown RBP15.81■□□□□ 0.12
LTN1-203ENST00000389195 PRDM2Q13029 1718 aa15.8■□□□□ 0.12
LTN1-203ENST00000389195 TOPBP1Q92547 1522 aa15.8■□□□□ 0.12
LTN1-203ENST00000389195 URB2Q14146 1524 aaKnown RBP15.79■□□□□ 0.12
LTN1-203ENST00000389195 KIF21BO75037 1637 aa15.79■□□□□ 0.12
LTN1-203ENST00000389195 PRXQ9BXM0 1461 aa15.78■□□□□ 0.12
LTN1-203ENST00000389195 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
LTN1-203ENST00000389195 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.76■□□□□ 0.11
LTN1-203ENST00000389195 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
LTN1-203ENST00000389195 CARMIL1Q5VZK9 1371 aa15.74■□□□□ 0.11
LTN1-203ENST00000389195 PDS5BQ9NTI5 1447 aa15.72■□□□□ 0.11
LTN1-203ENST00000389195 LAMC3Q9Y6N6 1575 aa15.72■□□□□ 0.11
LTN1-203ENST00000389195 ATP1B4Q9UN42 357 aaPredicted RBP15.71■□□□□ 0.11
LTN1-203ENST00000389195 DNMBPQ6XZF7 1577 aa15.7■□□□□ 0.1
LTN1-203ENST00000389195 HNRNPUL2Q1KMD3 747 aaKnown RBP15.68■□□□□ 0.1
LTN1-203ENST00000389195 KANK4Q5T7N3 995 aaPredicted RBP15.68■□□□□ 0.1
LTN1-203ENST00000389195 APLP2Q06481 763 aa15.67■□□□□ 0.1
LTN1-203ENST00000389195 ARAP1Q96P48 1450 aa15.66■□□□□ 0.1
LTN1-203ENST00000389195 AQRO60306 1485 aaKnown RBP eCLIP15.63■□□□□ 0.091e-6■■■■□ 22.3
LTN1-203ENST00000389195 VPS8Q8N3P4 1428 aa15.63■□□□□ 0.09
LTN1-203ENST00000389195 ERICH3Q5RHP9 1530 aa15.61■□□□□ 0.09
LTN1-203ENST00000389195 ABCA10Q8WWZ4 1543 aa15.6■□□□□ 0.09
LTN1-203ENST00000389195 ARHGAP35Q9NRY4 1499 aa15.59■□□□□ 0.09
LTN1-203ENST00000389195 CCER1Q8TC90 406 aaPredicted RBP15.57■□□□□ 0.08
LTN1-203ENST00000389195 ERCC6Q03468 1493 aa15.56■□□□□ 0.08
LTN1-203ENST00000389195 GAPVD1Q14C86 1478 aa15.55■□□□□ 0.08
LTN1-203ENST00000389195 ZNF608Q9ULD9 1512 aaPredicted RBP15.55■□□□□ 0.08
LTN1-203ENST00000389195 ARID3CA6NKF2 412 aa15.55■□□□□ 0.08
LTN1-203ENST00000389195 ITGAEP38570 1179 aa15.55■□□□□ 0.08
LTN1-203ENST00000389195 FBLN2P98095 1184 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 263.1 ms