RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CCNB3Q8WWL7 1395 aa20.31■□□□□ 0.84
TCOF1-202ENST00000377797 CFDP1Q9UEE9 299 aaPredicted RBP20.3■□□□□ 0.84
TCOF1-202ENST00000377797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.29■□□□□ 0.843e-8■■■■□ 21
TCOF1-202ENST00000377797 ERICH6Q7L0X2 663 aa20.26■□□□□ 0.83
TCOF1-202ENST00000377797 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
TCOF1-202ENST00000377797 CFTRP13569 1480 aa20.23■□□□□ 0.83
TCOF1-202ENST00000377797 IGF1RP08069 1367 aa20.21■□□□□ 0.83
TCOF1-202ENST00000377797 DDX10Q13206 875 aaKnown RBP20.21■□□□□ 0.83
TCOF1-202ENST00000377797 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
TCOF1-202ENST00000377797 FMN1Q68DA7 1419 aa20.18■□□□□ 0.82
TCOF1-202ENST00000377797 FHOD3Q2V2M9 1422 aa20.17■□□□□ 0.82
TCOF1-202ENST00000377797 RAD54L2Q9Y4B4 1467 aa20.17■□□□□ 0.82
TCOF1-202ENST00000377797 CC2D2AQ9P2K1 1620 aa20.16■□□□□ 0.82
TCOF1-202ENST00000377797 SYNJ1O43426 1573 aa20.15■□□□□ 0.82
TCOF1-202ENST00000377797 HIRIP3Q9BW71 556 aaPredicted RBP20.13■□□□□ 0.81
TCOF1-202ENST00000377797 CHGAP10645 457 aaKnown RBP20.13■□□□□ 0.81
TCOF1-202ENST00000377797 GTF3C3Q9Y5Q9 886 aa20.13■□□□□ 0.81
TCOF1-202ENST00000377797 KDM2AQ9Y2K7 1162 aa20.11■□□□□ 0.81
TCOF1-202ENST00000377797 NESP48681 1621 aa20.1■□□□□ 0.81
TCOF1-202ENST00000377797 CARMIL2Q6F5E8 1435 aa20.1■□□□□ 0.81
TCOF1-202ENST00000377797 SIN3AQ96ST3 1273 aa20.1■□□□□ 0.81
TCOF1-202ENST00000377797 UNC13AQ9UPW8 1703 aa20.1■□□□□ 0.81
TCOF1-202ENST00000377797 ARHGAP35Q9NRY4 1499 aa20.09■□□□□ 0.81
TCOF1-202ENST00000377797 CLSPNQ9HAW4 1339 aa20.08■□□□□ 0.81
TCOF1-202ENST00000377797 ACIN1Q9UKV3 1341 aaKnown RBP20.07■□□□□ 0.8
TCOF1-202ENST00000377797 GAPVD1Q14C86 1478 aa20.06■□□□□ 0.8
TCOF1-202ENST00000377797 ESF1Q9H501 851 aaKnown RBP20.04■□□□□ 0.8
TCOF1-202ENST00000377797 JPH4Q96JJ6 628 aa20.04■□□□□ 0.8
TCOF1-202ENST00000377797 MIER1Q8N108 512 aa20.03■□□□□ 0.8
TCOF1-202ENST00000377797 BCANQ96GW7 911 aa20.01■□□□□ 0.79
TCOF1-202ENST00000377797 SETD5Q9C0A6 1442 aa20■□□□□ 0.79
TCOF1-202ENST00000377797 EIF4G2P78344 907 aaKnown RBP eCLIP19.99■□□□□ 0.79
TCOF1-202ENST00000377797 CUX1P39880 1505 aa19.99■□□□□ 0.79
TCOF1-202ENST00000377797 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
TCOF1-202ENST00000377797 DNAJC5BQ9UF47 199 aa19.97■□□□□ 0.79
TCOF1-202ENST00000377797 TOP2BQ02880 1626 aa19.97■□□□□ 0.79
TCOF1-202ENST00000377797 STAG3Q9UJ98 1225 aa19.97■□□□□ 0.79
TCOF1-202ENST00000377797 RGL3Q3MIN7 710 aa19.95■□□□□ 0.78
TCOF1-202ENST00000377797 AQRO60306 1485 aaKnown RBP eCLIP19.95■□□□□ 0.785e-7■■■■■ 40.3
TCOF1-202ENST00000377797 RAB3GAP2Q9H2M9 1393 aa19.94■□□□□ 0.78
TCOF1-202ENST00000377797 KIF21BO75037 1637 aa19.92■□□□□ 0.78
TCOF1-202ENST00000377797 TOPBP1Q92547 1522 aa19.9■□□□□ 0.78
TCOF1-202ENST00000377797 PRXQ9BXM0 1461 aa19.89■□□□□ 0.77
TCOF1-202ENST00000377797 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
TCOF1-202ENST00000377797 ERICH3Q5RHP9 1530 aa19.87■□□□□ 0.77
TCOF1-202ENST00000377797 PLPPR3Q6T4P5 718 aa19.86■□□□□ 0.77
TCOF1-202ENST00000377797 HNRNPUQ00839 825 aaKnown RBP eCLIP19.85■□□□□ 0.77
TCOF1-202ENST00000377797 FAM9BQ8IZU0 186 aa19.85■□□□□ 0.77
TCOF1-202ENST00000377797 TIMELESSQ9UNS1 1208 aa19.83■□□□□ 0.77
TCOF1-202ENST00000377797 CCDC18Q5T9S5 1454 aa19.81■□□□□ 0.76
TCOF1-202ENST00000377797 ARAP1Q96P48 1450 aa19.81■□□□□ 0.76
TCOF1-202ENST00000377797 FOXD1Q16676 465 aa19.8■□□□□ 0.76
TCOF1-202ENST00000377797 MRC2Q9UBG0 1479 aa19.78■□□□□ 0.76
TCOF1-202ENST00000377797 GRIN2BQ13224 1484 aa19.78■□□□□ 0.76
TCOF1-202ENST00000377797 MRS2Q9HD23 443 aa19.78■□□□□ 0.76
TCOF1-202ENST00000377797 TMC1Q8TDI8 760 aa19.77■□□□□ 0.76
TCOF1-202ENST00000377797 EFCAB2Q5VUJ9 269 aa19.76■□□□□ 0.75
TCOF1-202ENST00000377797 CARD11Q9BXL7 1154 aa19.76■□□□□ 0.75
TCOF1-202ENST00000377797 PTPRGP23470 1445 aa19.76■□□□□ 0.75
TCOF1-202ENST00000377797 DNMBPQ6XZF7 1577 aa19.76■□□□□ 0.75
TCOF1-202ENST00000377797 MPHOSPH9Q99550 1183 aa19.75■□□□□ 0.75
TCOF1-202ENST00000377797 PKD2Q13563 968 aa19.75■□□□□ 0.75
TCOF1-202ENST00000377797 HNRNPMP52272 730 aaKnown RBP eCLIP19.73■□□□□ 0.75
TCOF1-202ENST00000377797 SENP3Q9H4L4 574 aaPredicted RBP19.73■□□□□ 0.75
TCOF1-202ENST00000377797 ANKRD30AQ9BXX3 1397 aa19.71■□□□□ 0.75
TCOF1-202ENST00000377797 DHX57Q6P158 1386 aaKnown RBP19.7■□□□□ 0.74
TCOF1-202ENST00000377797 LAMC3Q9Y6N6 1575 aa19.69■□□□□ 0.74
TCOF1-202ENST00000377797 DCAF11Q8TEB1 546 aa19.69■□□□□ 0.74
TCOF1-202ENST00000377797 SALL2Q9Y467 1007 aaPredicted RBP19.68■□□□□ 0.74
TCOF1-202ENST00000377797 NUP155O75694 1391 aa19.68■□□□□ 0.74
TCOF1-202ENST00000377797 PHLDB1Q86UU1 1377 aa19.68■□□□□ 0.74
TCOF1-202ENST00000377797 IFT140Q96RY7 1462 aa19.67■□□□□ 0.74
TCOF1-202ENST00000377797 LRRC9Q6ZRR7 1453 aa19.67■□□□□ 0.74
TCOF1-202ENST00000377797 CASKIN1Q8WXD9 1431 aa19.66■□□□□ 0.74
TCOF1-202ENST00000377797 ABCA10Q8WWZ4 1543 aa19.65■□□□□ 0.74
TCOF1-202ENST00000377797 FKBP8Q14318 412 aa19.65■□□□□ 0.74
TCOF1-202ENST00000377797 NEFMP07197 916 aa19.65■□□□□ 0.74
TCOF1-202ENST00000377797 PPP1R15AO75807 674 aaPredicted RBP19.64■□□□□ 0.73
TCOF1-202ENST00000377797 DAXXQ9UER7 740 aaPredicted RBP19.63■□□□□ 0.73
TCOF1-202ENST00000377797 RSPH4AQ5TD94 716 aa19.62■□□□□ 0.73
TCOF1-202ENST00000377797 ARID4BQ4LE39 1312 aaPredicted RBP19.61■□□□□ 0.73
TCOF1-202ENST00000377797 FGD6Q6ZV73 1430 aa19.6■□□□□ 0.73
TCOF1-202ENST00000377797 KANK1Q14678 1352 aa19.6■□□□□ 0.73
TCOF1-202ENST00000377797 GGT6Q6P531 493 aa19.59■□□□□ 0.73
TCOF1-202ENST00000377797 MYOM3Q5VTT5 1437 aa19.57■□□□□ 0.72
TCOF1-202ENST00000377797 HSPA5P11021 654 aaKnown RBP19.57■□□□□ 0.72
TCOF1-202ENST00000377797 CANXP27824 592 aaKnown RBP19.57■□□□□ 0.72
TCOF1-202ENST00000377797 OSCARQ8IYS5 282 aa19.57■□□□□ 0.72
TCOF1-202ENST00000377797 L3MBTL2Q969R5 705 aa19.57■□□□□ 0.72
TCOF1-202ENST00000377797 ZNF644Q9H582 1327 aaPredicted RBP19.57■□□□□ 0.72
TCOF1-202ENST00000377797 FYCO1Q9BQS8 1478 aa19.56■□□□□ 0.72
TCOF1-202ENST00000377797 SPAG9O60271 1321 aaKnown RBP19.55■□□□□ 0.72
TCOF1-202ENST00000377797 EFCAB5A4FU69 1503 aa19.54■□□□□ 0.72
TCOF1-202ENST00000377797 URB2Q14146 1524 aaKnown RBP19.54■□□□□ 0.72
TCOF1-202ENST00000377797 SNAPC4Q5SXM2 1469 aa19.54■□□□□ 0.72
TCOF1-202ENST00000377797 WDR43Q15061 677 aaKnown RBP eCLIP19.54■□□□□ 0.727e-6■■■■■ 27.3
TCOF1-202ENST00000377797 SCAF1Q9H7N4 1312 aaKnown RBP19.54■□□□□ 0.72
TCOF1-202ENST00000377797 CDCA8Q53HL2 280 aa19.53■□□□□ 0.72
TCOF1-202ENST00000377797 KIF3BO15066 747 aa19.52■□□□□ 0.72
TCOF1-202ENST00000377797 NCOA2Q15596 1464 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms