RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 NISCHQ9Y2I1 1504 aa27.68■■■□□ 2.02
TCOF1-202ENST00000377797 DCAF8L2P0C7V8 631 aa26.25■■□□□ 1.79
TCOF1-202ENST00000377797 SHROOM4Q9ULL8 1493 aa25.1■■□□□ 1.61
TCOF1-202ENST00000377797 SUPT5HO00267 1087 aaKnown RBP24.99■■□□□ 1.59
TCOF1-202ENST00000377797 EHMT2Q96KQ7 1210 aa23.6■■□□□ 1.37
TCOF1-202ENST00000377797 ABCC9O60706 1549 aa23.43■■□□□ 1.34
TCOF1-202ENST00000377797 FAM9AQ8IZU1 332 aaPredicted RBP23.37■■□□□ 1.33
TCOF1-202ENST00000377797 TRIM41Q8WV44 630 aa23.23■■□□□ 1.31
TCOF1-202ENST00000377797 CCDC180Q9P1Z9 1646 aa23.09■■□□□ 1.29
TCOF1-202ENST00000377797 ZCCHC6Q5VYS8 1495 aaKnown RBP23.04■■□□□ 1.28
TCOF1-202ENST00000377797 CHIC1Q5VXU3 224 aa22.89■■□□□ 1.25
TCOF1-202ENST00000377797 PABPN1Q86U42 306 aaKnown RBP eCLIP22.88■■□□□ 1.25
TCOF1-202ENST00000377797 APLP2Q06481 763 aa22.81■■□□□ 1.24
TCOF1-202ENST00000377797 PCGF6Q9BYE7 350 aa22.77■■□□□ 1.24
TCOF1-202ENST00000377797 TTBK1Q5TCY1 1321 aaPredicted RBP22.7■■□□□ 1.22
TCOF1-202ENST00000377797 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
TCOF1-202ENST00000377797 UBTFP17480 764 aaKnown RBP22.66■■□□□ 1.22
TCOF1-202ENST00000377797 LOC105371045A0A1W2PR82 267 aa22.56■■□□□ 1.2
TCOF1-202ENST00000377797 SCRIBQ14160 1630 aa22.56■■□□□ 1.2
TCOF1-202ENST00000377797 PPARGC1BQ86YN6 1023 aaKnown RBP22.3■■□□□ 1.16
TCOF1-202ENST00000377797 ATP1B4Q9UN42 357 aaPredicted RBP22.28■■□□□ 1.16
TCOF1-202ENST00000377797 RB1CC1Q8TDY2 1594 aa22.18■■□□□ 1.14
TCOF1-202ENST00000377797 DCAF1Q9Y4B6 1507 aa22.17■■□□□ 1.14
TCOF1-202ENST00000377797 NACADO15069 1562 aa22.16■■□□□ 1.14
TCOF1-202ENST00000377797 TRIM26Q12899 539 aaPredicted RBP22.12■■□□□ 1.13
TCOF1-202ENST00000377797 CCER1Q8TC90 406 aaPredicted RBP22.11■■□□□ 1.13
TCOF1-202ENST00000377797 ZEB1P37275 1124 aaPredicted RBP22.03■■□□□ 1.12
TCOF1-202ENST00000377797 RSF1Q96T23 1441 aaPredicted RBP21.98■■□□□ 1.11
TCOF1-202ENST00000377797 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
TCOF1-202ENST00000377797 HRCP23327 699 aa21.74■■□□□ 1.07
TCOF1-202ENST00000377797 CECR2Q9BXF3 1484 aa21.74■■□□□ 1.07
TCOF1-202ENST00000377797 ITGAEP38570 1179 aa21.7■■□□□ 1.06
TCOF1-202ENST00000377797 HNRNPUL2Q1KMD3 747 aaKnown RBP21.69■■□□□ 1.06
TCOF1-202ENST00000377797 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.64■■□□□ 1.06
TCOF1-202ENST00000377797 MYO15BQ96JP2 1530 aa21.64■■□□□ 1.05
TCOF1-202ENST00000377797 BAZ1AQ9NRL2 1556 aaPredicted RBP21.59■■□□□ 1.05
TCOF1-202ENST00000377797 MROH2BQ7Z745 1585 aa21.47■■□□□ 1.03
TCOF1-202ENST00000377797 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
TCOF1-202ENST00000377797 FBLN2P98095 1184 aa21.37■■□□□ 1.01
TCOF1-202ENST00000377797 P3H3Q8IVL6 736 aa21.36■■□□□ 1.01
TCOF1-202ENST00000377797 FAM50AQ14320 339 aaKnown RBP21.33■■□□□ 1.01
TCOF1-202ENST00000377797 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
TCOF1-202ENST00000377797 CENPBP07199 599 aaPredicted RBP21.26■□□□□ 0.99
TCOF1-202ENST00000377797 CCDC88BA6NC98 1476 aa21.18■□□□□ 0.98
TCOF1-202ENST00000377797 EEA1Q15075 1411 aa21.17■□□□□ 0.98
TCOF1-202ENST00000377797 MYT1LQ9UL68 1186 aa21.16■□□□□ 0.98
TCOF1-202ENST00000377797 WIZO95785 1651 aa21.16■□□□□ 0.98
TCOF1-202ENST00000377797 PELP1Q8IZL8 1130 aaKnown RBP21.12■□□□□ 0.97
TCOF1-202ENST00000377797 ARID3CA6NKF2 412 aa21.11■□□□□ 0.97
TCOF1-202ENST00000377797 YTHDC1Q96MU7 727 aaKnown RBP21.11■□□□□ 0.97
TCOF1-202ENST00000377797 SMARCA2P51531 1590 aa21.07■□□□□ 0.96
TCOF1-202ENST00000377797 CLIP1P30622 1438 aa21.05■□□□□ 0.96
TCOF1-202ENST00000377797 GOLGA3Q08378 1498 aa21.03■□□□□ 0.96
TCOF1-202ENST00000377797 TOP2AP11388 1531 aaKnown RBP21.02■□□□□ 0.96
TCOF1-202ENST00000377797 CEP162Q5TB80 1403 aa21■□□□□ 0.95
TCOF1-202ENST00000377797 TRIM52Q96A61 297 aa21■□□□□ 0.95
TCOF1-202ENST00000377797 SMARCA4P51532 1647 aa20.98■□□□□ 0.95
TCOF1-202ENST00000377797 KIF27Q86VH2 1401 aa20.98■□□□□ 0.95
TCOF1-202ENST00000377797 SOGA1O94964 1423 aa20.98■□□□□ 0.95
TCOF1-202ENST00000377797 ABCC8Q09428 1581 aa20.97■□□□□ 0.95
TCOF1-202ENST00000377797 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
TCOF1-202ENST00000377797 NEUROD1Q13562 356 aa20.95■□□□□ 0.94
TCOF1-202ENST00000377797 TNIKQ9UKE5 1360 aa20.94■□□□□ 0.94
TCOF1-202ENST00000377797 CEP164Q9UPV0 1460 aa20.92■□□□□ 0.94
TCOF1-202ENST00000377797 DIEXFQ68CQ4 756 aaKnown RBP20.91■□□□□ 0.94
TCOF1-202ENST00000377797 POLR3GLQ9BT43 218 aa20.87■□□□□ 0.93
TCOF1-202ENST00000377797 CDK11AQ9UQ88 783 aaPredicted RBP20.87■□□□□ 0.93
TCOF1-202ENST00000377797 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
TCOF1-202ENST00000377797 ZNF777Q9ULD5 760 aaPredicted RBP20.79■□□□□ 0.92
TCOF1-202ENST00000377797 CUX2O14529 1486 aa20.77■□□□□ 0.91
TCOF1-202ENST00000377797 CADPSQ9ULU8 1353 aa20.73■□□□□ 0.91
TCOF1-202ENST00000377797 MTUS2Q5JR59 1369 aa20.71■□□□□ 0.91
TCOF1-202ENST00000377797 CNGB1Q14028 1251 aaPredicted RBP20.7■□□□□ 0.9
TCOF1-202ENST00000377797 CARMIL1Q5VZK9 1371 aa20.7■□□□□ 0.9
TCOF1-202ENST00000377797 ZNF316A6NFI3 1004 aaPredicted RBP20.69■□□□□ 0.9
TCOF1-202ENST00000377797 MYT1Q01538 1121 aa20.68■□□□□ 0.9
TCOF1-202ENST00000377797 ERCC6Q03468 1493 aa20.67■□□□□ 0.9
TCOF1-202ENST00000377797 NEFLP07196 543 aa20.67■□□□□ 0.9
TCOF1-202ENST00000377797 PDS5BQ9NTI5 1447 aa20.63■□□□□ 0.89
TCOF1-202ENST00000377797 ZNF326Q5BKZ1 582 aaKnown RBP20.62■□□□□ 0.89
TCOF1-202ENST00000377797 CHIC2Q9UKJ5 165 aa20.61■□□□□ 0.89
TCOF1-202ENST00000377797 TDRD9Q8NDG6 1382 aaKnown RBP20.55■□□□□ 0.88
TCOF1-202ENST00000377797 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
TCOF1-202ENST00000377797 EIF4G1Q04637 1599 aaKnown RBP20.53■□□□□ 0.88
TCOF1-202ENST00000377797 RUSC2Q8N2Y8 1516 aa20.53■□□□□ 0.88
TCOF1-202ENST00000377797 VPS8Q8N3P4 1428 aa20.47■□□□□ 0.87
TCOF1-202ENST00000377797 NPM1P06748 294 aaKnown RBP eCLIP20.46■□□□□ 0.87
TCOF1-202ENST00000377797 TONSLQ96HA7 1378 aa20.44■□□□□ 0.86
TCOF1-202ENST00000377797 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
TCOF1-202ENST00000377797 FHAD1B1AJZ9 1412 aa20.43■□□□□ 0.86
TCOF1-202ENST00000377797 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
TCOF1-202ENST00000377797 PLEKHD1A6NEE1 506 aa20.42■□□□□ 0.86
TCOF1-202ENST00000377797 TSPY4P0CV99 314 aa20.41■□□□□ 0.86
TCOF1-202ENST00000377797 TSPY10P0CW01 314 aa20.41■□□□□ 0.86
TCOF1-202ENST00000377797 RRP7BPQ9NSQ0 103 aa20.4■□□□□ 0.86
TCOF1-202ENST00000377797 BICRAQ9NZM4 1560 aa20.4■□□□□ 0.86
TCOF1-202ENST00000377797 ANP32CO43423 234 aa20.39■□□□□ 0.85
TCOF1-202ENST00000377797 SLC4A1APQ9BWU0 796 aaKnown RBP20.36■□□□□ 0.85
TCOF1-202ENST00000377797 KANK4Q5T7N3 995 aaPredicted RBP20.36■□□□□ 0.85
TCOF1-202ENST00000377797 KCNH8Q96L42 1107 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 812.3 ms