RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 AQRO60306 1485 aaKnown RBP eCLIP17.86■□□□□ 0.456e-7■■■□□ 16.6
C9orf3-203ENST00000375315 PRXQ9BXM0 1461 aa17.84■□□□□ 0.45
C9orf3-203ENST00000375315 MIER1Q8N108 512 aa17.82■□□□□ 0.44
C9orf3-203ENST00000375315 MRC2Q9UBG0 1479 aa17.8■□□□□ 0.44
C9orf3-203ENST00000375315 KIF21BO75037 1637 aa17.8■□□□□ 0.44
C9orf3-203ENST00000375315 TSHZ2Q9NRE2 1034 aa17.77■□□□□ 0.43
C9orf3-203ENST00000375315 GAPVD1Q14C86 1478 aa17.76■□□□□ 0.43
C9orf3-203ENST00000375315 ABCA10Q8WWZ4 1543 aa17.76■□□□□ 0.43
C9orf3-203ENST00000375315 ZNF608Q9ULD9 1512 aaPredicted RBP17.76■□□□□ 0.43
C9orf3-203ENST00000375315 SUPT16HQ9Y5B9 1047 aaKnown RBP17.75■□□□□ 0.43
C9orf3-203ENST00000375315 ARID3CA6NKF2 412 aa17.75■□□□□ 0.43
C9orf3-203ENST00000375315 PRKCSHP14314 528 aaPredicted RBP17.72■□□□□ 0.43
C9orf3-203ENST00000375315 HNRNPUL2Q1KMD3 747 aaKnown RBP17.68■□□□□ 0.42
C9orf3-203ENST00000375315 CHMP7Q8WUX9 453 aaPredicted RBP17.66■□□□□ 0.42
C9orf3-203ENST00000375315 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
C9orf3-203ENST00000375315 KANK4Q5T7N3 995 aaPredicted RBP17.65■□□□□ 0.42
C9orf3-203ENST00000375315 ARAP1Q96P48 1450 aa17.64■□□□□ 0.41
C9orf3-203ENST00000375315 VPS8Q8N3P4 1428 aa17.63■□□□□ 0.41
C9orf3-203ENST00000375315 ITGAEP38570 1179 aa17.62■□□□□ 0.41
C9orf3-203ENST00000375315 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
C9orf3-203ENST00000375315 ARHGAP35Q9NRY4 1499 aa17.6■□□□□ 0.41
C9orf3-203ENST00000375315 TARBP1Q13395 1621 aaKnown RBP17.59■□□□□ 0.41
C9orf3-203ENST00000375315 IFT140Q96RY7 1462 aa17.56■□□□□ 0.4
C9orf3-203ENST00000375315 WDR62O43379 1518 aa17.56■□□□□ 0.4
C9orf3-203ENST00000375315 ERICH6Q7L0X2 663 aa17.54■□□□□ 0.4
C9orf3-203ENST00000375315 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
C9orf3-203ENST00000375315 SNAPC4Q5SXM2 1469 aa17.53■□□□□ 0.4
C9orf3-203ENST00000375315 ABCA5Q8WWZ7 1642 aa17.53■□□□□ 0.4
C9orf3-203ENST00000375315 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
C9orf3-203ENST00000375315 WDR97A6NE52 1622 aa17.49■□□□□ 0.39
C9orf3-203ENST00000375315 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
C9orf3-203ENST00000375315 CUL7Q14999 1698 aa17.45■□□□□ 0.38
C9orf3-203ENST00000375315 EIF4G3O43432 1585 aaKnown RBP17.44■□□□□ 0.38
C9orf3-203ENST00000375315 PBRM1Q86U86 1689 aa17.42■□□□□ 0.38
C9orf3-203ENST00000375315 FAM50AQ14320 339 aaKnown RBP17.41■□□□□ 0.38
C9orf3-203ENST00000375315 JPH4Q96JJ6 628 aa17.36■□□□□ 0.37
C9orf3-203ENST00000375315 ADAMTS12P58397 1594 aa17.36■□□□□ 0.37
C9orf3-203ENST00000375315 GRIN2AQ12879 1464 aa17.33■□□□□ 0.37
C9orf3-203ENST00000375315 RBM19Q9Y4C8 960 aaKnown RBP17.33■□□□□ 0.37
C9orf3-203ENST00000375315 CTTNBP2Q8WZ74 1663 aa17.3■□□□□ 0.36
C9orf3-203ENST00000375315 MTUS2Q5JR59 1369 aa17.29■□□□□ 0.36
C9orf3-203ENST00000375315 PCF11O94913 1555 aaKnown RBP17.29■□□□□ 0.36
C9orf3-203ENST00000375315 SYNJ2O15056 1496 aa17.28■□□□□ 0.36
C9orf3-203ENST00000375315 IQGAP2Q13576 1575 aa17.27■□□□□ 0.36
C9orf3-203ENST00000375315 BCANQ96GW7 911 aa17.27■□□□□ 0.36
C9orf3-203ENST00000375315 FMN1Q68DA7 1419 aa17.26■□□□□ 0.35
C9orf3-203ENST00000375315 MAGI1Q96QZ7 1491 aaPredicted RBP17.25■□□□□ 0.35
C9orf3-203ENST00000375315 MYT1LQ9UL68 1186 aa17.25■□□□□ 0.35
C9orf3-203ENST00000375315 KIAA0586Q9BVV6 1533 aa17.23■□□□□ 0.35
C9orf3-203ENST00000375315 PHLDB1Q86UU1 1377 aa17.22■□□□□ 0.35
C9orf3-203ENST00000375315 FKBP8Q14318 412 aa17.21■□□□□ 0.35
C9orf3-203ENST00000375315 EFCAB5A4FU69 1503 aa17.21■□□□□ 0.34
C9orf3-203ENST00000375315 CASKIN1Q8WXD9 1431 aa17.2■□□□□ 0.34
C9orf3-203ENST00000375315 CEP170Q5SW79 1584 aa17.2■□□□□ 0.34
C9orf3-203ENST00000375315 LRRC9Q6ZRR7 1453 aa17.2■□□□□ 0.34
C9orf3-203ENST00000375315 TIAM1Q13009 1591 aa17.18■□□□□ 0.34
C9orf3-203ENST00000375315 CCNB3Q8WWL7 1395 aa17.18■□□□□ 0.34
C9orf3-203ENST00000375315 NEFLP07196 543 aa17.17■□□□□ 0.34
C9orf3-203ENST00000375315 CHIC2Q9UKJ5 165 aa17.17■□□□□ 0.34
C9orf3-203ENST00000375315 ZNF777Q9ULD5 760 aaPredicted RBP17.16■□□□□ 0.34
C9orf3-203ENST00000375315 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
C9orf3-203ENST00000375315 MSH5O43196 834 aa17.15■□□□□ 0.34
C9orf3-203ENST00000375315 PLB1Q6P1J6 1458 aa17.14■□□□□ 0.33
C9orf3-203ENST00000375315 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
C9orf3-203ENST00000375315 DISP1Q96F81 1524 aa17.14■□□□□ 0.33
C9orf3-203ENST00000375315 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
C9orf3-203ENST00000375315 SAMD9Q5K651 1589 aa17.13■□□□□ 0.33
C9orf3-203ENST00000375315 CARMIL2Q6F5E8 1435 aa17.12■□□□□ 0.33
C9orf3-203ENST00000375315 FANCIQ9NVI1 1328 aa17.11■□□□□ 0.33
C9orf3-203ENST00000375315 KCNH8Q96L42 1107 aa17.1■□□□□ 0.33
C9orf3-203ENST00000375315 NUP160Q12769 1436 aa17.09■□□□□ 0.33
C9orf3-203ENST00000375315 UGGT2Q9NYU1 1516 aa17.07■□□□□ 0.32
C9orf3-203ENST00000375315 PTPRGP23470 1445 aa17.06■□□□□ 0.32
C9orf3-203ENST00000375315 RRP7BPQ9NSQ0 103 aa17.06■□□□□ 0.32
C9orf3-203ENST00000375315 CDK11AQ9UQ88 783 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-203ENST00000375315 KIAA0556O60303 1618 aa17.06■□□□□ 0.32
C9orf3-203ENST00000375315 ZNF644Q9H582 1327 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-203ENST00000375315 CHD1O14646 1710 aa17.05■□□□□ 0.32
C9orf3-203ENST00000375315 EPRSP07814 1512 aaKnown RBP17.05■□□□□ 0.32
C9orf3-203ENST00000375315 DEKP35659 375 aaKnown RBP17.04■□□□□ 0.32
C9orf3-203ENST00000375315 PLEKHD1A6NEE1 506 aa17.03■□□□□ 0.32
C9orf3-203ENST00000375315 NCOA2Q15596 1464 aa17.02■□□□□ 0.32
C9orf3-203ENST00000375315 RRBP1Q9P2E9 1410 aaKnown RBP17.02■□□□□ 0.31
C9orf3-203ENST00000375315 MAGI3Q5TCQ9 1506 aa17.01■□□□□ 0.31
C9orf3-203ENST00000375315 ERCC6L2Q5T890 1561 aa17■□□□□ 0.31
C9orf3-203ENST00000375315 ANO8Q9HCE9 1232 aaPredicted RBP17■□□□□ 0.31
C9orf3-203ENST00000375315 NUP153P49790 1475 aaKnown RBP17■□□□□ 0.31
C9orf3-203ENST00000375315 LRRIQ1Q96JM4 1722 aa16.99■□□□□ 0.31
C9orf3-203ENST00000375315 OSCARQ8IYS5 282 aa16.98■□□□□ 0.31
C9orf3-203ENST00000375315 CFDP1Q9UEE9 299 aaPredicted RBP16.97■□□□□ 0.31
C9orf3-203ENST00000375315 FGD6Q6ZV73 1430 aa16.96■□□□□ 0.31
C9orf3-203ENST00000375315 HECW1Q76N89 1606 aa16.96■□□□□ 0.31
C9orf3-203ENST00000375315 CFAP43Q8NDM7 1665 aa16.96■□□□□ 0.31
C9orf3-203ENST00000375315 MAP3K1Q13233 1512 aa16.96■□□□□ 0.31
C9orf3-203ENST00000375315 ERICH6BQ5W0A0 696 aa16.96■□□□□ 0.31
C9orf3-203ENST00000375315 RAB3GAP2Q9H2M9 1393 aa16.95■□□□□ 0.3
C9orf3-203ENST00000375315 TRIM52Q96A61 297 aa16.94■□□□□ 0.3
C9orf3-203ENST00000375315 CCDC18Q5T9S5 1454 aa16.93■□□□□ 0.3
C9orf3-203ENST00000375315 MYOM3Q5VTT5 1437 aa16.92■□□□□ 0.3
C9orf3-203ENST00000375315 RAPGEF6Q8TEU7 1601 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms