RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 APLP2Q06481 763 aa27.76■■■□□ 2.03
HLA-DQB1-201ENST00000374943 GRIN2BQ13224 1484 aa27.73■■■□□ 2.03
HLA-DQB1-201ENST00000374943 FHAD1B1AJZ9 1412 aa27.71■■■□□ 2.03
HLA-DQB1-201ENST00000374943 AQRO60306 1485 aaKnown RBP eCLIP27.71■■■□□ 2.03
HLA-DQB1-201ENST00000374943 EIF4G3O43432 1585 aaKnown RBP27.67■■■□□ 2.02
HLA-DQB1-201ENST00000374943 TTBK1Q5TCY1 1321 aaPredicted RBP27.67■■■□□ 2.02
HLA-DQB1-201ENST00000374943 MAP3K1Q13233 1512 aa27.67■■■□□ 2.02
HLA-DQB1-201ENST00000374943 ZNF608Q9ULD9 1512 aaPredicted RBP27.66■■■□□ 2.02
HLA-DQB1-201ENST00000374943 SAMD9Q5K651 1589 aa27.66■■■□□ 2.02
HLA-DQB1-201ENST00000374943 TIAM1Q13009 1591 aa27.59■■■□□ 2.01
HLA-DQB1-201ENST00000374943 CFAP43Q8NDM7 1665 aa27.59■■■□□ 2.01
HLA-DQB1-201ENST00000374943 PCF11O94913 1555 aaKnown RBP27.59■■■□□ 2.01
HLA-DQB1-201ENST00000374943 FHOD3Q2V2M9 1422 aa27.54■■■□□ 2
HLA-DQB1-201ENST00000374943 FYCO1Q9BQS8 1478 aa27.54■■■□□ 2
HLA-DQB1-201ENST00000374943 ZEB1P37275 1124 aaPredicted RBP27.53■■■□□ 2
HLA-DQB1-201ENST00000374943 IQGAP2Q13576 1575 aa27.52■■■□□ 2
HLA-DQB1-201ENST00000374943 SNAPC4Q5SXM2 1469 aa27.5■■□□□ 1.99
HLA-DQB1-201ENST00000374943 MAGI1Q96QZ7 1491 aaPredicted RBP27.49■■□□□ 1.99
HLA-DQB1-201ENST00000374943 FMN1Q68DA7 1419 aa27.48■■□□□ 1.99
HLA-DQB1-201ENST00000374943 CASKIN1Q8WXD9 1431 aa27.48■■□□□ 1.99
HLA-DQB1-201ENST00000374943 KANK4Q5T7N3 995 aaPredicted RBP27.47■■□□□ 1.99
HLA-DQB1-201ENST00000374943 GRIN2AQ12879 1464 aa27.42■■□□□ 1.98
HLA-DQB1-201ENST00000374943 LRRC9Q6ZRR7 1453 aa27.41■■□□□ 1.98
HLA-DQB1-201ENST00000374943 P3H3Q8IVL6 736 aa27.4■■□□□ 1.98
HLA-DQB1-201ENST00000374943 RRBP1Q9P2E9 1410 aaKnown RBP27.4■■□□□ 1.98
HLA-DQB1-201ENST00000374943 UGGT2Q9NYU1 1516 aa27.4■■□□□ 1.98
HLA-DQB1-201ENST00000374943 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
HLA-DQB1-201ENST00000374943 KIAA0586Q9BVV6 1533 aa27.35■■□□□ 1.97
HLA-DQB1-201ENST00000374943 LRRIQ1Q96JM4 1722 aa27.35■■□□□ 1.97
HLA-DQB1-201ENST00000374943 CEP170Q5SW79 1584 aa27.26■■□□□ 1.95
HLA-DQB1-201ENST00000374943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.26■■□□□ 1.95
HLA-DQB1-201ENST00000374943 KIAA0556O60303 1618 aa27.25■■□□□ 1.95
HLA-DQB1-201ENST00000374943 HECW1Q76N89 1606 aa27.23■■□□□ 1.95
HLA-DQB1-201ENST00000374943 CCNB3Q8WWL7 1395 aa27.22■■□□□ 1.95
HLA-DQB1-201ENST00000374943 CCER1Q8TC90 406 aaPredicted RBP27.22■■□□□ 1.95
HLA-DQB1-201ENST00000374943 NUP160Q12769 1436 aa27.21■■□□□ 1.95
HLA-DQB1-201ENST00000374943 DISP1Q96F81 1524 aa27.19■■□□□ 1.94
HLA-DQB1-201ENST00000374943 HNRNPUL2Q1KMD3 747 aaKnown RBP27.19■■□□□ 1.94
HLA-DQB1-201ENST00000374943 CCDC18Q5T9S5 1454 aa27.18■■□□□ 1.94
HLA-DQB1-201ENST00000374943 CHMP7Q8WUX9 453 aaPredicted RBP27.15■■□□□ 1.94
HLA-DQB1-201ENST00000374943 PHLDB1Q86UU1 1377 aa27.14■■□□□ 1.94
HLA-DQB1-201ENST00000374943 ATP1B4Q9UN42 357 aaPredicted RBP27.14■■□□□ 1.93
HLA-DQB1-201ENST00000374943 EHBP1L1Q8N3D4 1523 aa27.13■■□□□ 1.93
HLA-DQB1-201ENST00000374943 SUPT6HQ7KZ85 1726 aaKnown RBP27.1■■□□□ 1.93
HLA-DQB1-201ENST00000374943 EPRSP07814 1512 aaKnown RBP27.05■■□□□ 1.92
HLA-DQB1-201ENST00000374943 MTUS2Q5JR59 1369 aa27.05■■□□□ 1.92
HLA-DQB1-201ENST00000374943 CHD1O14646 1710 aa27.05■■□□□ 1.92
HLA-DQB1-201ENST00000374943 RAPGEF6Q8TEU7 1601 aa27.04■■□□□ 1.92
HLA-DQB1-201ENST00000374943 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.03■■□□□ 1.92
HLA-DQB1-201ENST00000374943 OSCARQ8IYS5 282 aa27.01■■□□□ 1.92
HLA-DQB1-201ENST00000374943 ARHGEF11O15085 1522 aa27.01■■□□□ 1.91
HLA-DQB1-201ENST00000374943 MAGI3Q5TCQ9 1506 aa27.01■■□□□ 1.91
HLA-DQB1-201ENST00000374943 NCOA2Q15596 1464 aa26.98■■□□□ 1.91
HLA-DQB1-201ENST00000374943 FBLN2P98095 1184 aa26.98■■□□□ 1.91
HLA-DQB1-201ENST00000374943 CARMIL2Q6F5E8 1435 aa26.96■■□□□ 1.91
HLA-DQB1-201ENST00000374943 FGD6Q6ZV73 1430 aa26.95■■□□□ 1.9
HLA-DQB1-201ENST00000374943 CDK13Q14004 1512 aaKnown RBP26.95■■□□□ 1.9
HLA-DQB1-201ENST00000374943 NUP153P49790 1475 aaKnown RBP26.92■■□□□ 1.9
HLA-DQB1-201ENST00000374943 MYOM3Q5VTT5 1437 aa26.91■■□□□ 1.9
HLA-DQB1-201ENST00000374943 JPH4Q96JJ6 628 aa26.9■■□□□ 1.9
HLA-DQB1-201ENST00000374943 SHROOM2Q13796 1616 aa26.87■■□□□ 1.89
HLA-DQB1-201ENST00000374943 CLSPNQ9HAW4 1339 aa26.85■■□□□ 1.89
HLA-DQB1-201ENST00000374943 DHX57Q6P158 1386 aaKnown RBP26.84■■□□□ 1.89
HLA-DQB1-201ENST00000374943 PTPN23Q9H3S7 1636 aa26.83■■□□□ 1.89
HLA-DQB1-201ENST00000374943 ABCA8O94911 1581 aa26.82■■□□□ 1.88
HLA-DQB1-201ENST00000374943 RIMBP3CA6NJZ7 1639 aa26.82■■□□□ 1.88
HLA-DQB1-201ENST00000374943 RIMBP3BA6NNM3 1639 aa26.82■■□□□ 1.88
HLA-DQB1-201ENST00000374943 RIMBP3Q9UFD9 1639 aa26.82■■□□□ 1.88
HLA-DQB1-201ENST00000374943 FAM50AQ14320 339 aaKnown RBP26.82■■□□□ 1.88
HLA-DQB1-201ENST00000374943 TCOF1Q13428 1488 aaKnown RBP26.79■■□□□ 1.88
HLA-DQB1-201ENST00000374943 PLB1Q6P1J6 1458 aa26.79■■□□□ 1.88
HLA-DQB1-201ENST00000374943 SETD5Q9C0A6 1442 aa26.78■■□□□ 1.88
HLA-DQB1-201ENST00000374943 ITGAEP38570 1179 aa26.77■■□□□ 1.88
HLA-DQB1-201ENST00000374943 ADCY10Q96PN6 1610 aa26.76■■□□□ 1.87
HLA-DQB1-201ENST00000374943 RAB3GAP2Q9H2M9 1393 aa26.76■■□□□ 1.87
HLA-DQB1-201ENST00000374943 MIA2Q96PC5 1412 aa26.75■■□□□ 1.87
HLA-DQB1-201ENST00000374943 PRG4Q92954 1404 aaPredicted RBP26.74■■□□□ 1.87
HLA-DQB1-201ENST00000374943 CDK11AQ9UQ88 783 aaPredicted RBP26.7■■□□□ 1.86
HLA-DQB1-201ENST00000374943 TROQ12816 1431 aaPredicted RBP26.69■■□□□ 1.86
HLA-DQB1-201ENST00000374943 CLASP1Q7Z460 1538 aa26.69■■□□□ 1.86
HLA-DQB1-201ENST00000374943 ITSN2Q9NZM3 1697 aa26.66■■□□□ 1.86
HLA-DQB1-201ENST00000374943 PTPRKQ15262 1439 aa26.64■■□□□ 1.85
HLA-DQB1-201ENST00000374943 HFM1A2PYH4 1435 aa26.63■■□□□ 1.85
HLA-DQB1-201ENST00000374943 ARID3CA6NKF2 412 aa26.63■■□□□ 1.85
HLA-DQB1-201ENST00000374943 GCC2Q8IWJ2 1684 aa26.61■■□□□ 1.85
HLA-DQB1-201ENST00000374943 PTPRGP23470 1445 aa26.61■■□□□ 1.85
HLA-DQB1-201ENST00000374943 KIF14Q15058 1648 aa26.6■■□□□ 1.85
HLA-DQB1-201ENST00000374943 MAPKBP1O60336 1514 aa26.59■■□□□ 1.85
HLA-DQB1-201ENST00000374943 ATP10BO94823 1461 aa26.58■■□□□ 1.85
HLA-DQB1-201ENST00000374943 AKNAQ7Z591 1439 aa26.58■■□□□ 1.84
HLA-DQB1-201ENST00000374943 DNMT1P26358 1616 aaKnown RBP26.55■■□□□ 1.84
HLA-DQB1-201ENST00000374943 ERCC6L2Q5T890 1561 aa26.53■■□□□ 1.84
HLA-DQB1-201ENST00000374943 NAIPQ13075 1403 aa26.53■■□□□ 1.84
HLA-DQB1-201ENST00000374943 CDC42BPAQ5VT25 1732 aa26.51■■□□□ 1.83
HLA-DQB1-201ENST00000374943 UACAQ9BZF9 1416 aa26.51■■□□□ 1.83
HLA-DQB1-201ENST00000374943 GPATCH8Q9UKJ3 1502 aaKnown RBP26.49■■□□□ 1.83
HLA-DQB1-201ENST00000374943 ABCC2Q92887 1545 aa26.47■■□□□ 1.83
HLA-DQB1-201ENST00000374943 ABCC10Q5T3U5 1492 aa26.47■■□□□ 1.83
HLA-DQB1-201ENST00000374943 DAPK1P53355 1430 aa26.45■■□□□ 1.82
HLA-DQB1-201ENST00000374943 CROCC2H7BZ55 1655 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms