RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 CUL7Q14999 1698 aa16.59■□□□□ 0.25
CCDC40-203ENST00000374877 TDRD9Q8NDG6 1382 aaKnown RBP16.58■□□□□ 0.25
CCDC40-203ENST00000374877 CARMIL1Q5VZK9 1371 aa16.58■□□□□ 0.24
CCDC40-203ENST00000374877 GRIN2BQ13224 1484 aa16.52■□□□□ 0.24
CCDC40-203ENST00000374877 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
CCDC40-203ENST00000374877 PBRM1Q86U86 1689 aa16.51■□□□□ 0.23
CCDC40-203ENST00000374877 ZNF608Q9ULD9 1512 aaPredicted RBP16.51■□□□□ 0.23
CCDC40-203ENST00000374877 AQRO60306 1485 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC40-203ENST00000374877 MYT1Q01538 1121 aa16.5■□□□□ 0.23
CCDC40-203ENST00000374877 EIF4G3O43432 1585 aaKnown RBP16.49■□□□□ 0.23
CCDC40-203ENST00000374877 MIER1Q8N108 512 aa16.47■□□□□ 0.23
CCDC40-203ENST00000374877 FHAD1B1AJZ9 1412 aa16.46■□□□□ 0.23
CCDC40-203ENST00000374877 ADAMTS12P58397 1594 aa16.45■□□□□ 0.22
CCDC40-203ENST00000374877 MAGI1Q96QZ7 1491 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-203ENST00000374877 CLIP1P30622 1438 aa16.4■□□□□ 0.22
CCDC40-203ENST00000374877 SNAPC4Q5SXM2 1469 aa16.39■□□□□ 0.21
CCDC40-203ENST00000374877 APLP2Q06481 763 aa16.35■□□□□ 0.21
CCDC40-203ENST00000374877 CTTNBP2Q8WZ74 1663 aa16.34■□□□□ 0.21
CCDC40-203ENST00000374877 SYNJ2O15056 1496 aa16.33■□□□□ 0.21
CCDC40-203ENST00000374877 RANGAP1P46060 587 aaPredicted RBP16.33■□□□□ 0.2
CCDC40-203ENST00000374877 GRIN2AQ12879 1464 aa16.31■□□□□ 0.2
CCDC40-203ENST00000374877 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
CCDC40-203ENST00000374877 ARHGAP35Q9NRY4 1499 aa16.28■□□□□ 0.2
CCDC40-203ENST00000374877 VPS8Q8N3P4 1428 aa16.27■□□□□ 0.2
CCDC40-203ENST00000374877 ARAP1Q96P48 1450 aa16.27■□□□□ 0.19
CCDC40-203ENST00000374877 CHMP7Q8WUX9 453 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-203ENST00000374877 KIAA0586Q9BVV6 1533 aa16.23■□□□□ 0.19
CCDC40-203ENST00000374877 IQGAP2Q13576 1575 aa16.23■□□□□ 0.19
CCDC40-203ENST00000374877 NUP160Q12769 1436 aa16.22■□□□□ 0.19
CCDC40-203ENST00000374877 SAMD9Q5K651 1589 aa16.21■□□□□ 0.18
CCDC40-203ENST00000374877 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
CCDC40-203ENST00000374877 CEP170Q5SW79 1584 aa16.18■□□□□ 0.18
CCDC40-203ENST00000374877 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CCDC40-203ENST00000374877 CHD1O14646 1710 aa16.12■□□□□ 0.17
CCDC40-203ENST00000374877 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
CCDC40-203ENST00000374877 FMN1Q68DA7 1419 aa16.11■□□□□ 0.17
CCDC40-203ENST00000374877 DHX57Q6P158 1386 aaKnown RBP16.1■□□□□ 0.17
CCDC40-203ENST00000374877 CLSPNQ9HAW4 1339 aa16.08■□□□□ 0.17
CCDC40-203ENST00000374877 SUPT16HQ9Y5B9 1047 aaKnown RBP16.08■□□□□ 0.16
CCDC40-203ENST00000374877 MAP3K1Q13233 1512 aa16.07■□□□□ 0.16
CCDC40-203ENST00000374877 KIAA0556O60303 1618 aa16.07■□□□□ 0.16
CCDC40-203ENST00000374877 DISP1Q96F81 1524 aa16.07■□□□□ 0.16
CCDC40-203ENST00000374877 CASKIN1Q8WXD9 1431 aa16.06■□□□□ 0.16
CCDC40-203ENST00000374877 FYCO1Q9BQS8 1478 aa16.06■□□□□ 0.16
CCDC40-203ENST00000374877 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
CCDC40-203ENST00000374877 PCF11O94913 1555 aaKnown RBP16.04■□□□□ 0.16
CCDC40-203ENST00000374877 KANK4Q5T7N3 995 aaPredicted RBP16.03■□□□□ 0.16
CCDC40-203ENST00000374877 JPH4Q96JJ6 628 aa16.03■□□□□ 0.16
CCDC40-203ENST00000374877 CARMIL2Q6F5E8 1435 aa16.03■□□□□ 0.16
CCDC40-203ENST00000374877 SHROOM2Q13796 1616 aa16.01■□□□□ 0.15
CCDC40-203ENST00000374877 CLASP1Q7Z460 1538 aa16.01■□□□□ 0.15
CCDC40-203ENST00000374877 TIAM1Q13009 1591 aa15.98■□□□□ 0.15
CCDC40-203ENST00000374877 ITGAEP38570 1179 aa15.98■□□□□ 0.15
CCDC40-203ENST00000374877 CFAP43Q8NDM7 1665 aa15.97■□□□□ 0.15
CCDC40-203ENST00000374877 PRG4Q92954 1404 aaPredicted RBP15.95■□□□□ 0.14
CCDC40-203ENST00000374877 HECW1Q76N89 1606 aa15.94■□□□□ 0.14
CCDC40-203ENST00000374877 CCDC18Q5T9S5 1454 aa15.93■□□□□ 0.14
CCDC40-203ENST00000374877 TSHZ2Q9NRE2 1034 aa15.91■□□□□ 0.14
CCDC40-203ENST00000374877 LRRC9Q6ZRR7 1453 aa15.91■□□□□ 0.14
CCDC40-203ENST00000374877 RRBP1Q9P2E9 1410 aaKnown RBP15.89■□□□□ 0.13
CCDC40-203ENST00000374877 KCNH8Q96L42 1107 aa15.89■□□□□ 0.13
CCDC40-203ENST00000374877 RAPGEF6Q8TEU7 1601 aa15.89■□□□□ 0.13
CCDC40-203ENST00000374877 CCNB3Q8WWL7 1395 aa15.88■□□□□ 0.13
CCDC40-203ENST00000374877 EPRSP07814 1512 aaKnown RBP15.86■□□□□ 0.13
CCDC40-203ENST00000374877 ABCA8O94911 1581 aa15.86■□□□□ 0.13
CCDC40-203ENST00000374877 BCANQ96GW7 911 aa15.86■□□□□ 0.13
CCDC40-203ENST00000374877 LRRIQ1Q96JM4 1722 aa15.85■□□□□ 0.13
CCDC40-203ENST00000374877 ATP1B4Q9UN42 357 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-203ENST00000374877 PTPRGP23470 1445 aa15.85■□□□□ 0.13
CCDC40-203ENST00000374877 OSCARQ8IYS5 282 aa15.85■□□□□ 0.13
CCDC40-203ENST00000374877 NUP153P49790 1475 aaKnown RBP15.85■□□□□ 0.13
CCDC40-203ENST00000374877 EHBP1L1Q8N3D4 1523 aa15.82■□□□□ 0.12
CCDC40-203ENST00000374877 PLB1Q6P1J6 1458 aa15.82■□□□□ 0.12
CCDC40-203ENST00000374877 ERCC6L2Q5T890 1561 aa15.81■□□□□ 0.12
CCDC40-203ENST00000374877 RAB3GAP2Q9H2M9 1393 aa15.8■□□□□ 0.12
CCDC40-203ENST00000374877 MTUS2Q5JR59 1369 aa15.79■□□□□ 0.12
CCDC40-203ENST00000374877 DDX10Q13206 875 aaKnown RBP15.78■□□□□ 0.12
CCDC40-203ENST00000374877 ANP32EQ9BTT0 268 aa15.78■□□□□ 0.12
CCDC40-203ENST00000374877 CDK13Q14004 1512 aaKnown RBP15.78■□□□□ 0.12
CCDC40-203ENST00000374877 FKBP8Q14318 412 aa15.77■□□□□ 0.12
CCDC40-203ENST00000374877 UACAQ9BZF9 1416 aa15.77■□□□□ 0.12
CCDC40-203ENST00000374877 MAGI3Q5TCQ9 1506 aa15.76■□□□□ 0.11
CCDC40-203ENST00000374877 UHRF1BP1LA0JNW5 1464 aa15.75■□□□□ 0.11
CCDC40-203ENST00000374877 CDK11AQ9UQ88 783 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-203ENST00000374877 SUPT6HQ7KZ85 1726 aaKnown RBP15.74■□□□□ 0.11
CCDC40-203ENST00000374877 ARHGEF11O15085 1522 aa15.74■□□□□ 0.11
CCDC40-203ENST00000374877 ABCC2Q92887 1545 aa15.74■□□□□ 0.11
CCDC40-203ENST00000374877 SIN3AQ96ST3 1273 aa15.73■□□□□ 0.11
CCDC40-203ENST00000374877 MAPKBP1O60336 1514 aa15.73■□□□□ 0.11
CCDC40-203ENST00000374877 ATP10BO94823 1461 aa15.72■□□□□ 0.11
CCDC40-203ENST00000374877 NCOA2Q15596 1464 aa15.72■□□□□ 0.11
CCDC40-203ENST00000374877 PHLDB1Q86UU1 1377 aa15.72■□□□□ 0.11
CCDC40-203ENST00000374877 FAM50AQ14320 339 aaKnown RBP15.71■□□□□ 0.11
CCDC40-203ENST00000374877 TROQ12816 1431 aaPredicted RBP15.71■□□□□ 0.1
CCDC40-203ENST00000374877 SETD5Q9C0A6 1442 aa15.7■□□□□ 0.1
CCDC40-203ENST00000374877 NEFLP07196 543 aa15.69■□□□□ 0.1
CCDC40-203ENST00000374877 HIRIP3Q9BW71 556 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-203ENST00000374877 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.69■□□□□ 0.1
CCDC40-203ENST00000374877 ADCY10Q96PN6 1610 aa15.68■□□□□ 0.1
CCDC40-203ENST00000374877 MYOM3Q5VTT5 1437 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms