RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
CCDC40-203ENST00000374877 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
CCDC40-203ENST00000374877 ZCCHC6Q5VYS8 1495 aaKnown RBP19.89■□□□□ 0.77
CCDC40-203ENST00000374877 DCAF1Q9Y4B6 1507 aa19.67■□□□□ 0.74
CCDC40-203ENST00000374877 ABCC9O60706 1549 aa19.57■□□□□ 0.72
CCDC40-203ENST00000374877 MYO15BQ96JP2 1530 aa19.5■□□□□ 0.71
CCDC40-203ENST00000374877 DCAF8L2P0C7V8 631 aa19.39■□□□□ 0.69
CCDC40-203ENST00000374877 NACADO15069 1562 aa19.35■□□□□ 0.69
CCDC40-203ENST00000374877 RB1CC1Q8TDY2 1594 aa19.18■□□□□ 0.66
CCDC40-203ENST00000374877 SHROOM4Q9ULL8 1493 aa19.06■□□□□ 0.64
CCDC40-203ENST00000374877 SCRIBQ14160 1630 aa18.94■□□□□ 0.62
CCDC40-203ENST00000374877 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
CCDC40-203ENST00000374877 UNC13AQ9UPW8 1703 aa18.7■□□□□ 0.58
CCDC40-203ENST00000374877 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
CCDC40-203ENST00000374877 HRCP23327 699 aa18.45■□□□□ 0.54
CCDC40-203ENST00000374877 PABPN1Q86U42 306 aaKnown RBP eCLIP18.39■□□□□ 0.53
CCDC40-203ENST00000374877 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
CCDC40-203ENST00000374877 CECR2Q9BXF3 1484 aa18.34■□□□□ 0.53
CCDC40-203ENST00000374877 BAZ1AQ9NRL2 1556 aaPredicted RBP18.31■□□□□ 0.52
CCDC40-203ENST00000374877 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
CCDC40-203ENST00000374877 PCGF6Q9BYE7 350 aa18.3■□□□□ 0.52
CCDC40-203ENST00000374877 MROH2BQ7Z745 1585 aa18.24■□□□□ 0.51
CCDC40-203ENST00000374877 SMARCA4P51532 1647 aa18.21■□□□□ 0.51
CCDC40-203ENST00000374877 PPARGC1BQ86YN6 1023 aaKnown RBP18.12■□□□□ 0.49
CCDC40-203ENST00000374877 PEG3Q9GZU2 1588 aa18.06■□□□□ 0.48
CCDC40-203ENST00000374877 WIZO95785 1651 aa18.06■□□□□ 0.48
CCDC40-203ENST00000374877 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.47
CCDC40-203ENST00000374877 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
CCDC40-203ENST00000374877 TOP2AP11388 1531 aaKnown RBP17.96■□□□□ 0.47
CCDC40-203ENST00000374877 LOC105371045A0A1W2PR82 267 aa17.95■□□□□ 0.46
CCDC40-203ENST00000374877 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
CCDC40-203ENST00000374877 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
CCDC40-203ENST00000374877 HMGXB3Q12766 1538 aa17.83■□□□□ 0.44
CCDC40-203ENST00000374877 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
CCDC40-203ENST00000374877 TRIM26Q12899 539 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-203ENST00000374877 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
CCDC40-203ENST00000374877 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
CCDC40-203ENST00000374877 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
CCDC40-203ENST00000374877 TRIM41Q8WV44 630 aa17.47■□□□□ 0.39
CCDC40-203ENST00000374877 FAM9AQ8IZU1 332 aaPredicted RBP17.46■□□□□ 0.39
CCDC40-203ENST00000374877 CFTRP13569 1480 aa17.4■□□□□ 0.38
CCDC40-203ENST00000374877 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
CCDC40-203ENST00000374877 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
CCDC40-203ENST00000374877 DNAJC5BQ9UF47 199 aa17.31■□□□□ 0.36
CCDC40-203ENST00000374877 PRDM2Q13029 1718 aa17.3■□□□□ 0.36
CCDC40-203ENST00000374877 PELP1Q8IZL8 1130 aaKnown RBP17.29■□□□□ 0.36
CCDC40-203ENST00000374877 SCAF1Q9H7N4 1312 aaKnown RBP17.27■□□□□ 0.35
CCDC40-203ENST00000374877 ABCC8Q09428 1581 aa17.26■□□□□ 0.35
CCDC40-203ENST00000374877 LAMC3Q9Y6N6 1575 aa17.25■□□□□ 0.35
CCDC40-203ENST00000374877 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
CCDC40-203ENST00000374877 NESP48681 1621 aa17.14■□□□□ 0.33
CCDC40-203ENST00000374877 FANCD2Q9BXW9 1451 aa17.14■□□□□ 0.33
CCDC40-203ENST00000374877 SYNJ1O43426 1573 aa17.14■□□□□ 0.33
CCDC40-203ENST00000374877 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
CCDC40-203ENST00000374877 BIVM-ERCC5R4GMW8 1640 aa17.12■□□□□ 0.33
CCDC40-203ENST00000374877 PDS5BQ9NTI5 1447 aa17.11■□□□□ 0.33
CCDC40-203ENST00000374877 CUX1P39880 1505 aa17.08■□□□□ 0.32
CCDC40-203ENST00000374877 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-203ENST00000374877 CCER1Q8TC90 406 aaPredicted RBP17.05■□□□□ 0.32
CCDC40-203ENST00000374877 CEP164Q9UPV0 1460 aa17.05■□□□□ 0.32
CCDC40-203ENST00000374877 EEA1Q15075 1411 aa17.01■□□□□ 0.31
CCDC40-203ENST00000374877 DNMBPQ6XZF7 1577 aa17■□□□□ 0.31
CCDC40-203ENST00000374877 ACIN1Q9UKV3 1341 aaKnown RBP16.96■□□□□ 0.31
CCDC40-203ENST00000374877 KIF21AQ7Z4S6 1674 aa16.96■□□□□ 0.31
CCDC40-203ENST00000374877 TOPBP1Q92547 1522 aa16.95■□□□□ 0.3
CCDC40-203ENST00000374877 NEUROD1Q13562 356 aa16.93■□□□□ 0.3
CCDC40-203ENST00000374877 SOGA1O94964 1423 aa16.93■□□□□ 0.3
CCDC40-203ENST00000374877 URB2Q14146 1524 aaKnown RBP16.93■□□□□ 0.3
CCDC40-203ENST00000374877 TTBK1Q5TCY1 1321 aaPredicted RBP16.92■□□□□ 0.3
CCDC40-203ENST00000374877 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
CCDC40-203ENST00000374877 MRC2Q9UBG0 1479 aa16.9■□□□□ 0.3
CCDC40-203ENST00000374877 DIEXFQ68CQ4 756 aaKnown RBP16.89■□□□□ 0.29
CCDC40-203ENST00000374877 POLA1P09884 1462 aaPredicted RBP16.85■□□□□ 0.29
CCDC40-203ENST00000374877 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
CCDC40-203ENST00000374877 CENPBP07199 599 aaPredicted RBP16.84■□□□□ 0.29
CCDC40-203ENST00000374877 GTF3C3Q9Y5Q9 886 aa16.83■□□□□ 0.28
CCDC40-203ENST00000374877 CSRNP3Q8WYN3 585 aa16.83■□□□□ 0.28
CCDC40-203ENST00000374877 KIF27Q86VH2 1401 aa16.83■□□□□ 0.28
CCDC40-203ENST00000374877 ERCC6Q03468 1493 aa16.82■□□□□ 0.28
CCDC40-203ENST00000374877 WDR62O43379 1518 aa16.82■□□□□ 0.28
CCDC40-203ENST00000374877 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
CCDC40-203ENST00000374877 CUX2O14529 1486 aa16.77■□□□□ 0.27
CCDC40-203ENST00000374877 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.27
CCDC40-203ENST00000374877 KIF21BO75037 1637 aa16.75■□□□□ 0.27
CCDC40-203ENST00000374877 RAD54L2Q9Y4B4 1467 aa16.75■□□□□ 0.27
CCDC40-203ENST00000374877 WDR97A6NE52 1622 aa16.74■□□□□ 0.27
CCDC40-203ENST00000374877 GOLGA3Q08378 1498 aa16.71■□□□□ 0.27
CCDC40-203ENST00000374877 TARBP1Q13395 1621 aaKnown RBP16.71■□□□□ 0.27
CCDC40-203ENST00000374877 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
CCDC40-203ENST00000374877 PRXQ9BXM0 1461 aa16.7■□□□□ 0.26
CCDC40-203ENST00000374877 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
CCDC40-203ENST00000374877 ERICH3Q5RHP9 1530 aa16.68■□□□□ 0.26
CCDC40-203ENST00000374877 IGF1RP08069 1367 aa16.67■□□□□ 0.26
CCDC40-203ENST00000374877 ABCA5Q8WWZ7 1642 aa16.66■□□□□ 0.26
CCDC40-203ENST00000374877 TNIKQ9UKE5 1360 aa16.64■□□□□ 0.25
CCDC40-203ENST00000374877 UBTFP17480 764 aaKnown RBP16.64■□□□□ 0.25
CCDC40-203ENST00000374877 ZNF316A6NFI3 1004 aaPredicted RBP16.63■□□□□ 0.25
CCDC40-203ENST00000374877 YTHDC1Q96MU7 727 aaKnown RBP16.62■□□□□ 0.25
CCDC40-203ENST00000374877 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
CCDC40-203ENST00000374877 RAPGEF2Q9Y4G8 1499 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms