RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 RIMBP3BA6NNM3 1639 aa18.86■□□□□ 0.61
HMGCL-202ENST00000374487 RIMBP3Q9UFD9 1639 aa18.86■□□□□ 0.61
HMGCL-202ENST00000374487 TNIKQ9UKE5 1360 aa18.86■□□□□ 0.61
HMGCL-202ENST00000374487 ARHGEF11O15085 1522 aa18.86■□□□□ 0.61
HMGCL-202ENST00000374487 CARMIL1Q5VZK9 1371 aa18.85■□□□□ 0.61
HMGCL-202ENST00000374487 NUP160Q12769 1436 aa18.83■□□□□ 0.61
HMGCL-202ENST00000374487 PPARGC1BQ86YN6 1023 aaKnown RBP18.83■□□□□ 0.61
HMGCL-202ENST00000374487 CEP162Q5TB80 1403 aa18.83■□□□□ 0.6
HMGCL-202ENST00000374487 GOLGA3Q08378 1498 aa18.8■□□□□ 0.6
HMGCL-202ENST00000374487 CYB5RLQ6IPT4 315 aa18.8■□□□□ 0.6
HMGCL-202ENST00000374487 CUL7Q14999 1698 aa18.78■□□□□ 0.6
HMGCL-202ENST00000374487 ERCC6L2Q5T890 1561 aa18.77■□□□□ 0.6
HMGCL-202ENST00000374487 ARAP1Q96P48 1450 aa18.74■□□□□ 0.59
HMGCL-202ENST00000374487 JPH4Q96JJ6 628 aa18.72■□□□□ 0.59
HMGCL-202ENST00000374487 RAPGEF2Q9Y4G8 1499 aa18.7■□□□□ 0.58
HMGCL-202ENST00000374487 ZEB1P37275 1124 aaPredicted RBP18.69■□□□□ 0.58
HMGCL-202ENST00000374487 KIF21BO75037 1637 aa18.68■□□□□ 0.58
HMGCL-202ENST00000374487 PRG4Q92954 1404 aaPredicted RBP18.67■□□□□ 0.58
HMGCL-202ENST00000374487 PRXQ9BXM0 1461 aa18.66■□□□□ 0.58
HMGCL-202ENST00000374487 KIAA0586Q9BVV6 1533 aa18.66■□□□□ 0.58
HMGCL-202ENST00000374487 SHROOM2Q13796 1616 aa18.66■□□□□ 0.58
HMGCL-202ENST00000374487 TTBK1Q5TCY1 1321 aaPredicted RBP18.62■□□□□ 0.57
HMGCL-202ENST00000374487 CLIP1P30622 1438 aa18.57■□□□□ 0.56
HMGCL-202ENST00000374487 IQGAP2Q13576 1575 aa18.55■□□□□ 0.56
HMGCL-202ENST00000374487 RANGAP1P46060 587 aaPredicted RBP18.54■□□□□ 0.56
HMGCL-202ENST00000374487 DISP1Q96F81 1524 aa18.49■□□□□ 0.55
HMGCL-202ENST00000374487 P3H3Q8IVL6 736 aa18.47■□□□□ 0.55
HMGCL-202ENST00000374487 CTTNBP2Q8WZ74 1663 aa18.47■□□□□ 0.55
HMGCL-202ENST00000374487 APLP2Q06481 763 aa18.45■□□□□ 0.54
HMGCL-202ENST00000374487 VPS8Q8N3P4 1428 aa18.45■□□□□ 0.54
HMGCL-202ENST00000374487 UGGT2Q9NYU1 1516 aa18.44■□□□□ 0.54
HMGCL-202ENST00000374487 PTPRGP23470 1445 aa18.43■□□□□ 0.54
HMGCL-202ENST00000374487 CCER1Q8TC90 406 aaPredicted RBP18.43■□□□□ 0.54
HMGCL-202ENST00000374487 CARMIL2Q6F5E8 1435 aa18.43■□□□□ 0.54
HMGCL-202ENST00000374487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.42■□□□□ 0.54
HMGCL-202ENST00000374487 KIAA0556O60303 1618 aa18.39■□□□□ 0.54
HMGCL-202ENST00000374487 TRHP20396 242 aaPredicted RBP18.39■□□□□ 0.53
HMGCL-202ENST00000374487 ADCY10Q96PN6 1610 aa18.36■□□□□ 0.53
HMGCL-202ENST00000374487 PLB1Q6P1J6 1458 aa18.31■□□□□ 0.52
HMGCL-202ENST00000374487 ARID3CA6NKF2 412 aa18.3■□□□□ 0.52
HMGCL-202ENST00000374487 FHOD3Q2V2M9 1422 aa18.28■□□□□ 0.52
HMGCL-202ENST00000374487 UACAQ9BZF9 1416 aa18.28■□□□□ 0.52
HMGCL-202ENST00000374487 NPM1P06748 294 aaKnown RBP eCLIP18.27■□□□□ 0.51
HMGCL-202ENST00000374487 SAMD9Q5K651 1589 aa18.27■□□□□ 0.51
HMGCL-202ENST00000374487 ARHGAP35Q9NRY4 1499 aa18.23■□□□□ 0.51
HMGCL-202ENST00000374487 ABCC2Q92887 1545 aa18.22■□□□□ 0.51
HMGCL-202ENST00000374487 HNRNPUL2Q1KMD3 747 aaKnown RBP18.21■□□□□ 0.51
HMGCL-202ENST00000374487 UHRF1BP1LA0JNW5 1464 aa18.2■□□□□ 0.5
HMGCL-202ENST00000374487 ABCA8O94911 1581 aa18.19■□□□□ 0.5
HMGCL-202ENST00000374487 FAM69CQ0P6D2 419 aa18.17■□□□□ 0.5
HMGCL-202ENST00000374487 KDM5BQ9UGL1 1544 aa18.15■□□□□ 0.5
HMGCL-202ENST00000374487 ASXL2Q76L83 1435 aa18.15■□□□□ 0.5
HMGCL-202ENST00000374487 MAPKBP1O60336 1514 aa18.15■□□□□ 0.5
HMGCL-202ENST00000374487 ZCCHC11Q5TAX3 1644 aaKnown RBP18.14■□□□□ 0.5
HMGCL-202ENST00000374487 EFCAB5A4FU69 1503 aa18.13■□□□□ 0.49
HMGCL-202ENST00000374487 KANK4Q5T7N3 995 aaPredicted RBP18.13■□□□□ 0.49
HMGCL-202ENST00000374487 ATP1B4Q9UN42 357 aaPredicted RBP18.11■□□□□ 0.49
HMGCL-202ENST00000374487 ABCC10Q5T3U5 1492 aa18.11■□□□□ 0.49
HMGCL-202ENST00000374487 KIF13AQ9H1H9 1805 aa18.11■□□□□ 0.49
HMGCL-202ENST00000374487 ATP10BO94823 1461 aa18.1■□□□□ 0.49
HMGCL-202ENST00000374487 KCNH8Q96L42 1107 aa18.1■□□□□ 0.49
HMGCL-202ENST00000374487 NUP153P49790 1475 aaKnown RBP18.09■□□□□ 0.49
HMGCL-202ENST00000374487 RAPGEF6Q8TEU7 1601 aa18.09■□□□□ 0.49
HMGCL-202ENST00000374487 DIP2BQ9P265 1576 aa18.09■□□□□ 0.49
HMGCL-202ENST00000374487 WDR7Q9Y4E6 1490 aa18.02■□□□□ 0.48
HMGCL-202ENST00000374487 EPRSP07814 1512 aaKnown RBP18.02■□□□□ 0.48
HMGCL-202ENST00000374487 CDK13Q14004 1512 aaKnown RBP18.02■□□□□ 0.47
HMGCL-202ENST00000374487 TSPOAP1O95153 1857 aa18■□□□□ 0.47
HMGCL-202ENST00000374487 FMN1Q68DA7 1419 aa18■□□□□ 0.47
HMGCL-202ENST00000374487 RRBP1Q9P2E9 1410 aaKnown RBP17.96■□□□□ 0.47
HMGCL-202ENST00000374487 PCF11O94913 1555 aaKnown RBP17.95■□□□□ 0.46
HMGCL-202ENST00000374487 MAP3K1Q13233 1512 aa17.94■□□□□ 0.46
HMGCL-202ENST00000374487 CCNB3Q8WWL7 1395 aa17.93■□□□□ 0.46
HMGCL-202ENST00000374487 LRRIQ1Q96JM4 1722 aa17.93■□□□□ 0.46
HMGCL-202ENST00000374487 GLI2P10070 1586 aa17.93■□□□□ 0.46
HMGCL-202ENST00000374487 TIAM1Q13009 1591 aa17.92■□□□□ 0.46
HMGCL-202ENST00000374487 PLEKHD1A6NEE1 506 aa17.92■□□□□ 0.46
HMGCL-202ENST00000374487 PPRC1Q5VV67 1664 aaKnown RBP17.91■□□□□ 0.46
HMGCL-202ENST00000374487 HECW1Q76N89 1606 aa17.91■□□□□ 0.46
HMGCL-202ENST00000374487 CASKIN1Q8WXD9 1431 aa17.9■□□□□ 0.46
HMGCL-202ENST00000374487 MAP3K4Q9Y6R4 1608 aa17.89■□□□□ 0.45
HMGCL-202ENST00000374487 CD109Q6YHK3 1445 aa17.88■□□□□ 0.45
HMGCL-202ENST00000374487 LRRC9Q6ZRR7 1453 aa17.88■□□□□ 0.45
HMGCL-202ENST00000374487 ITGAEP38570 1179 aa17.87■□□□□ 0.45
HMGCL-202ENST00000374487 FYCO1Q9BQS8 1478 aa17.87■□□□□ 0.45
HMGCL-202ENST00000374487 DIEXFQ68CQ4 756 aaKnown RBP17.86■□□□□ 0.45
HMGCL-202ENST00000374487 COL17A1Q9UMD9 1497 aaPredicted RBP17.85■□□□□ 0.45
HMGCL-202ENST00000374487 MAGI3Q5TCQ9 1506 aa17.84■□□□□ 0.45
HMGCL-202ENST00000374487 ZNF316A6NFI3 1004 aaPredicted RBP17.83■□□□□ 0.44
HMGCL-202ENST00000374487 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.44
HMGCL-202ENST00000374487 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.81■□□□□ 0.44
HMGCL-202ENST00000374487 ABCA9Q8IUA7 1624 aa17.8■□□□□ 0.44
HMGCL-202ENST00000374487 DHX57Q6P158 1386 aaKnown RBP17.8■□□□□ 0.44
HMGCL-202ENST00000374487 TTC37Q6PGP7 1564 aa17.8■□□□□ 0.44
HMGCL-202ENST00000374487 KIF14Q15058 1648 aa17.8■□□□□ 0.44
HMGCL-202ENST00000374487 CFAP43Q8NDM7 1665 aa17.8■□□□□ 0.44
HMGCL-202ENST00000374487 PHLDB1Q86UU1 1377 aa17.79■□□□□ 0.44
HMGCL-202ENST00000374487 KDM6BO15054 1643 aa17.78■□□□□ 0.44
HMGCL-202ENST00000374487 CDK11AQ9UQ88 783 aaPredicted RBP17.78■□□□□ 0.44
HMGCL-202ENST00000374487 TROQ12816 1431 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms