RNA–Protein interactions for RNA: ENST00000369259.4

CHD1L-203, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 1 (best) BASIC

Gene CHD1L, Length 2,358 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-203ENST00000369259 SIN3AQ96ST3 1273 aa22.55■■□□□ 1.2
CHD1L-203ENST00000369259 SETD5Q9C0A6 1442 aa22.54■■□□□ 1.2
CHD1L-203ENST00000369259 PRXQ9BXM0 1461 aa22.54■■□□□ 1.2
CHD1L-203ENST00000369259 ERICH6BQ5W0A0 696 aa22.54■■□□□ 1.2
CHD1L-203ENST00000369259 IRX6P78412 446 aaPredicted RBP22.5■■□□□ 1.19
CHD1L-203ENST00000369259 HIRIP3Q9BW71 556 aaPredicted RBP22.5■■□□□ 1.19
CHD1L-203ENST00000369259 PPP4R2Q9NY27 417 aa22.47■■□□□ 1.19
CHD1L-203ENST00000369259 HNRNPUQ00839 825 aaKnown RBP eCLIP22.46■■□□□ 1.19
CHD1L-203ENST00000369259 TOP2BQ02880 1626 aa22.44■■□□□ 1.18
CHD1L-203ENST00000369259 PEG3Q9GZU2 1588 aa22.43■■□□□ 1.18
CHD1L-203ENST00000369259 NOP58Q9Y2X3 529 aaKnown RBP22.4■■□□□ 1.18
CHD1L-203ENST00000369259 ARHGAP35Q9NRY4 1499 aa22.37■■□□□ 1.17
CHD1L-203ENST00000369259 ANO8Q9HCE9 1232 aaPredicted RBP22.36■■□□□ 1.17
CHD1L-203ENST00000369259 NBR1Q14596 966 aa22.33■■□□□ 1.17
CHD1L-203ENST00000369259 MAP3K1Q13233 1512 aa22.31■■□□□ 1.16
CHD1L-203ENST00000369259 BIVM-ERCC5R4GMW8 1640 aa22.3■■□□□ 1.16
CHD1L-203ENST00000369259 UNC13AQ9UPW8 1703 aa22.29■■□□□ 1.16
CHD1L-203ENST00000369259 TIAM1Q13009 1591 aa22.28■■□□□ 1.16
CHD1L-203ENST00000369259 PAK3O75914 559 aaPredicted RBP22.28■■□□□ 1.16
CHD1L-203ENST00000369259 B4GALNT3Q6L9W6 998 aa22.26■■□□□ 1.15
CHD1L-203ENST00000369259 FAM50AQ14320 339 aaKnown RBP22.25■■□□□ 1.15
CHD1L-203ENST00000369259 PHLDB1Q86UU1 1377 aa22.25■■□□□ 1.15
CHD1L-203ENST00000369259 TONSLQ96HA7 1378 aa22.24■■□□□ 1.15
CHD1L-203ENST00000369259 LRRC9Q6ZRR7 1453 aa22.22■■□□□ 1.15
CHD1L-203ENST00000369259 KIF27Q86VH2 1401 aa22.2■■□□□ 1.14
CHD1L-203ENST00000369259 SALL2Q9Y467 1007 aaPredicted RBP22.19■■□□□ 1.14
CHD1L-203ENST00000369259 RTL5Q5HYW3 569 aaPredicted RBP22.18■■□□□ 1.14
CHD1L-203ENST00000369259 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
CHD1L-203ENST00000369259 IPO9Q96P70 1041 aaKnown RBP22.15■■□□□ 1.14
CHD1L-203ENST00000369259 FHAD1B1AJZ9 1412 aa22.15■■□□□ 1.14
CHD1L-203ENST00000369259 ANP32AP39687 249 aaKnown RBP22.13■■□□□ 1.13
CHD1L-203ENST00000369259 ZBED9Q6R2W3 1325 aa22.1■■□□□ 1.13
CHD1L-203ENST00000369259 ZBTB47Q9UFB7 747 aaPredicted RBP22.09■■□□□ 1.13
CHD1L-203ENST00000369259 WASHC2AQ641Q2 1341 aa22.08■■□□□ 1.13
CHD1L-203ENST00000369259 CCDC184Q52MB2 194 aa22.07■■□□□ 1.12
CHD1L-203ENST00000369259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.07■■□□□ 1.12
CHD1L-203ENST00000369259 IL27Q8NEV9 243 aa22.06■■□□□ 1.12
CHD1L-203ENST00000369259 PABPN1Q86U42 306 aaKnown RBP eCLIP22.05■■□□□ 1.122e-6■■□□□ 13.5
CHD1L-203ENST00000369259 CUX1P39880 1505 aa22.03■■□□□ 1.12
CHD1L-203ENST00000369259 FAM9BQ8IZU0 186 aa22.02■■□□□ 1.12
CHD1L-203ENST00000369259 BICRAQ9NZM4 1560 aa22.02■■□□□ 1.11
CHD1L-203ENST00000369259 HSPA5P11021 654 aaKnown RBP22.01■■□□□ 1.11
CHD1L-203ENST00000369259 NCOA2Q15596 1464 aa22.01■■□□□ 1.11
CHD1L-203ENST00000369259 UACAQ9BZF9 1416 aa22■■□□□ 1.11
CHD1L-203ENST00000369259 CNTLNQ9NXG0 1405 aa22■■□□□ 1.11
CHD1L-203ENST00000369259 CFAP43Q8NDM7 1665 aa22■■□□□ 1.11
CHD1L-203ENST00000369259 KDM5BQ9UGL1 1544 aa21.99■■□□□ 1.11
CHD1L-203ENST00000369259 CCDC18Q5T9S5 1454 aa21.99■■□□□ 1.11
CHD1L-203ENST00000369259 PRKRIP1Q9H875 184 aaPredicted RBP21.98■■□□□ 1.11
CHD1L-203ENST00000369259 CCDC136Q96JN2 1154 aa21.97■■□□□ 1.11
CHD1L-203ENST00000369259 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
CHD1L-203ENST00000369259 RTN4Q9NQC3 1192 aaKnown RBP21.95■■□□□ 1.1
CHD1L-203ENST00000369259 NCAPD3P42695 1498 aa21.94■■□□□ 1.1
CHD1L-203ENST00000369259 EIF4G2P78344 907 aaKnown RBP eCLIP21.92■■□□□ 1.1
CHD1L-203ENST00000369259 HFM1A2PYH4 1435 aa21.92■■□□□ 1.1
CHD1L-203ENST00000369259 SMG6Q86US8 1419 aaKnown RBP21.91■■□□□ 1.1
CHD1L-203ENST00000369259 IGF1RP08069 1367 aa21.9■■□□□ 1.1
CHD1L-203ENST00000369259 RNF123Q5XPI4 1314 aa21.9■■□□□ 1.1
CHD1L-203ENST00000369259 USP35Q9P2H5 1018 aa21.9■■□□□ 1.1
CHD1L-203ENST00000369259 PCF11O94913 1555 aaKnown RBP21.89■■□□□ 1.1
CHD1L-203ENST00000369259 AKNAQ7Z591 1439 aa21.87■■□□□ 1.09
CHD1L-203ENST00000369259 C11orf95C9JLR9 678 aaPredicted RBP21.87■■□□□ 1.09
CHD1L-203ENST00000369259 UBE2Q2Q8WVN8 375 aa21.87■■□□□ 1.09
CHD1L-203ENST00000369259 ATP1B4Q9UN42 357 aaPredicted RBP21.87■■□□□ 1.09
CHD1L-203ENST00000369259 PTPN23Q9H3S7 1636 aa21.86■■□□□ 1.09
CHD1L-203ENST00000369259 FGD6Q6ZV73 1430 aa21.86■■□□□ 1.09
CHD1L-203ENST00000369259 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.85■■□□□ 1.09
CHD1L-203ENST00000369259 CCDC7Q96M83 1385 aa21.85■■□□□ 1.09
CHD1L-203ENST00000369259 NUDCQ9Y266 331 aa21.84■■□□□ 1.09
CHD1L-203ENST00000369259 WASHC2CQ9Y4E1 1318 aa21.84■■□□□ 1.09
CHD1L-203ENST00000369259 NCOA1Q15788 1441 aa21.83■■□□□ 1.09
CHD1L-203ENST00000369259 NEFMP07197 916 aa21.83■■□□□ 1.08
CHD1L-203ENST00000369259 PTPRKQ15262 1439 aa21.83■■□□□ 1.08
CHD1L-203ENST00000369259 CARMIL1Q5VZK9 1371 aa21.82■■□□□ 1.08
CHD1L-203ENST00000369259 AQRO60306 1485 aaKnown RBP eCLIP21.82■■□□□ 1.086e-7■■■■■ 27.9
CHD1L-203ENST00000369259 NAIPQ13075 1403 aa21.81■■□□□ 1.08
CHD1L-203ENST00000369259 FYCO1Q9BQS8 1478 aa21.8■■□□□ 1.08
CHD1L-203ENST00000369259 P3H3Q8IVL6 736 aa21.79■■□□□ 1.08
CHD1L-203ENST00000369259 FMN1Q68DA7 1419 aa21.77■■□□□ 1.08
CHD1L-203ENST00000369259 LAS1LQ9Y4W2 734 aaKnown RBP21.77■■□□□ 1.08
CHD1L-203ENST00000369259 CASKIN1Q8WXD9 1431 aa21.76■■□□□ 1.07
CHD1L-203ENST00000369259 PPM1GO15355 546 aaPredicted RBP21.75■■□□□ 1.07
CHD1L-203ENST00000369259 NPM2Q86SE8 214 aaKnown RBP21.75■■□□□ 1.07
CHD1L-203ENST00000369259 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
CHD1L-203ENST00000369259 FHOD3Q2V2M9 1422 aa21.72■■□□□ 1.07
CHD1L-203ENST00000369259 TCERG1O14776 1098 aaKnown RBP21.72■■□□□ 1.07
CHD1L-203ENST00000369259 PDE4AP27815 886 aa21.67■■□□□ 1.06
CHD1L-203ENST00000369259 KIF7Q2M1P5 1343 aa21.67■■□□□ 1.06
CHD1L-203ENST00000369259 CFTRP13569 1480 aa21.66■■□□□ 1.06
CHD1L-203ENST00000369259 L3MBTL2Q969R5 705 aa21.66■■□□□ 1.06
CHD1L-203ENST00000369259 BRPF3Q9ULD4 1205 aa21.65■■□□□ 1.06
CHD1L-203ENST00000369259 DENND4BO75064 1496 aaPredicted RBP21.64■■□□□ 1.06
CHD1L-203ENST00000369259 ABCA5Q8WWZ7 1642 aa21.64■■□□□ 1.06
CHD1L-203ENST00000369259 BACH2Q9BYV9 841 aa21.64■■□□□ 1.05
CHD1L-203ENST00000369259 MTUS2Q5JR59 1369 aa21.64■■□□□ 1.05
CHD1L-203ENST00000369259 EFCAB5A4FU69 1503 aa21.63■■□□□ 1.05
CHD1L-203ENST00000369259 GSE1Q14687 1217 aa21.63■■□□□ 1.05
CHD1L-203ENST00000369259 MS4A1P11836 297 aa21.62■■□□□ 1.05
CHD1L-203ENST00000369259 MYOM3Q5VTT5 1437 aa21.61■■□□□ 1.05
CHD1L-203ENST00000369259 HECW1Q76N89 1606 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms