RNA–Protein interactions for RNA: ENST00000369259.4

CHD1L-203, Transcript of chromodomain helicase DNA binding protein 1 like, humanhuman

TSL 1 (best) BASIC

Gene CHD1L, Length 2,358 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1L-203ENST00000369259 NISCHQ9Y2I1 1504 aa30.44■■■□□ 2.46
CHD1L-203ENST00000369259 HRCP23327 699 aa27.45■■□□□ 1.98
CHD1L-203ENST00000369259 SHROOM4Q9ULL8 1493 aa26.83■■□□□ 1.89
CHD1L-203ENST00000369259 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
CHD1L-203ENST00000369259 PCGF6Q9BYE7 350 aa26.76■■□□□ 1.87
CHD1L-203ENST00000369259 PPARGC1BQ86YN6 1023 aaKnown RBP26.73■■□□□ 1.87
CHD1L-203ENST00000369259 PELP1Q8IZL8 1130 aaKnown RBP26.69■■□□□ 1.86
CHD1L-203ENST00000369259 MYO15BQ96JP2 1530 aa26.66■■□□□ 1.86
CHD1L-203ENST00000369259 CHIC1Q5VXU3 224 aa26.51■■□□□ 1.84
CHD1L-203ENST00000369259 DCAF1Q9Y4B6 1507 aa26.26■■□□□ 1.79
CHD1L-203ENST00000369259 TRIM26Q12899 539 aaPredicted RBP25.99■■□□□ 1.75
CHD1L-203ENST00000369259 SCAF1Q9H7N4 1312 aaKnown RBP25.95■■□□□ 1.75
CHD1L-203ENST00000369259 ZCCHC6Q5VYS8 1495 aaKnown RBP25.94■■□□□ 1.74
CHD1L-203ENST00000369259 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
CHD1L-203ENST00000369259 ZEB1P37275 1124 aaPredicted RBP25.88■■□□□ 1.73
CHD1L-203ENST00000369259 LOC105371045A0A1W2PR82 267 aa25.82■■□□□ 1.72
CHD1L-203ENST00000369259 MYT1Q01538 1121 aa25.71■■□□□ 1.71
CHD1L-203ENST00000369259 ACIN1Q9UKV3 1341 aaKnown RBP25.35■■□□□ 1.65
CHD1L-203ENST00000369259 NEUROD1Q13562 356 aa25.22■■□□□ 1.63
CHD1L-203ENST00000369259 DCAF8L2P0C7V8 631 aa25.13■■□□□ 1.61
CHD1L-203ENST00000369259 GTF3C3Q9Y5Q9 886 aa25.09■■□□□ 1.61
CHD1L-203ENST00000369259 CENPBP07199 599 aaPredicted RBP25.04■■□□□ 1.6
CHD1L-203ENST00000369259 DIEXFQ68CQ4 756 aaKnown RBP24.86■■□□□ 1.57
CHD1L-203ENST00000369259 TRIM41Q8WV44 630 aa24.86■■□□□ 1.57
CHD1L-203ENST00000369259 CCER1Q8TC90 406 aaPredicted RBP24.77■■□□□ 1.56
CHD1L-203ENST00000369259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.76■■□□□ 1.55
CHD1L-203ENST00000369259 FAM9AQ8IZU1 332 aaPredicted RBP24.74■■□□□ 1.55
CHD1L-203ENST00000369259 ABCC9O60706 1549 aa24.65■■□□□ 1.54
CHD1L-203ENST00000369259 EHMT2Q96KQ7 1210 aa24.54■■□□□ 1.52
CHD1L-203ENST00000369259 RSF1Q96T23 1441 aaPredicted RBP24.53■■□□□ 1.52
CHD1L-203ENST00000369259 ZNF316A6NFI3 1004 aaPredicted RBP24.39■■□□□ 1.5
CHD1L-203ENST00000369259 RB1CC1Q8TDY2 1594 aa24.39■■□□□ 1.5
CHD1L-203ENST00000369259 YTHDC1Q96MU7 727 aaKnown RBP24.35■■□□□ 1.49
CHD1L-203ENST00000369259 MIER1Q8N108 512 aa24.18■■□□□ 1.46
CHD1L-203ENST00000369259 TTBK1Q5TCY1 1321 aaPredicted RBP24.15■■□□□ 1.46
CHD1L-203ENST00000369259 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.45
CHD1L-203ENST00000369259 CLSPNQ9HAW4 1339 aa24.01■■□□□ 1.43
CHD1L-203ENST00000369259 SCRIBQ14160 1630 aa24.01■■□□□ 1.43
CHD1L-203ENST00000369259 ANP32EQ9BTT0 268 aa23.94■■□□□ 1.42
CHD1L-203ENST00000369259 CEP162Q5TB80 1403 aa23.9■■□□□ 1.42
CHD1L-203ENST00000369259 SUPT16HQ9Y5B9 1047 aaKnown RBP23.9■■□□□ 1.42
CHD1L-203ENST00000369259 BCL11AQ9H165 835 aa23.88■■□□□ 1.41
CHD1L-203ENST00000369259 TSHZ2Q9NRE2 1034 aa23.82■■□□□ 1.4
CHD1L-203ENST00000369259 TNIKQ9UKE5 1360 aa23.79■■□□□ 1.4
CHD1L-203ENST00000369259 MROH2BQ7Z745 1585 aa23.75■■□□□ 1.39
CHD1L-203ENST00000369259 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
CHD1L-203ENST00000369259 EIF4G1Q04637 1599 aaKnown RBP23.74■■□□□ 1.39
CHD1L-203ENST00000369259 WIZO95785 1651 aa23.66■■□□□ 1.38
CHD1L-203ENST00000369259 HNRNPUL2Q1KMD3 747 aaKnown RBP23.65■■□□□ 1.38
CHD1L-203ENST00000369259 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
CHD1L-203ENST00000369259 CSRNP3Q8WYN3 585 aa23.61■■□□□ 1.37
CHD1L-203ENST00000369259 BAZ1AQ9NRL2 1556 aaPredicted RBP23.56■■□□□ 1.36
CHD1L-203ENST00000369259 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
CHD1L-203ENST00000369259 ABCC8Q09428 1581 aa23.54■■□□□ 1.36
CHD1L-203ENST00000369259 SOGA1O94964 1423 aa23.54■■□□□ 1.36
CHD1L-203ENST00000369259 EEA1Q15075 1411 aa23.53■■□□□ 1.36
CHD1L-203ENST00000369259 GOLGA3Q08378 1498 aa23.45■■□□□ 1.34
CHD1L-203ENST00000369259 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
CHD1L-203ENST00000369259 NACADO15069 1562 aa23.32■■□□□ 1.32
CHD1L-203ENST00000369259 DHX57Q6P158 1386 aaKnown RBP23.3■■□□□ 1.32
CHD1L-203ENST00000369259 TOP2AP11388 1531 aaKnown RBP23.27■■□□□ 1.32
CHD1L-203ENST00000369259 BCANQ96GW7 911 aa23.27■■□□□ 1.32
CHD1L-203ENST00000369259 VPS8Q8N3P4 1428 aa23.26■■□□□ 1.31
CHD1L-203ENST00000369259 RBM19Q9Y4C8 960 aaKnown RBP23.26■■□□□ 1.31
CHD1L-203ENST00000369259 APLP2Q06481 763 aa23.25■■□□□ 1.31
CHD1L-203ENST00000369259 CLIP1P30622 1438 aa23.24■■□□□ 1.31
CHD1L-203ENST00000369259 FKBP8Q14318 412 aa23.22■■□□□ 1.31
CHD1L-203ENST00000369259 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
CHD1L-203ENST00000369259 SMARCA2P51531 1590 aa23.19■■□□□ 1.3
CHD1L-203ENST00000369259 KCNH8Q96L42 1107 aa23.16■■□□□ 1.3
CHD1L-203ENST00000369259 KIF21BO75037 1637 aa23.13■■□□□ 1.29
CHD1L-203ENST00000369259 NEFLP07196 543 aa23.07■■□□□ 1.28
CHD1L-203ENST00000369259 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
CHD1L-203ENST00000369259 MSH5O43196 834 aa23.03■■□□□ 1.28
CHD1L-203ENST00000369259 SMARCA4P51532 1647 aa22.95■■□□□ 1.26
CHD1L-203ENST00000369259 ITGAEP38570 1179 aa22.93■■□□□ 1.26
CHD1L-203ENST00000369259 FANCIQ9NVI1 1328 aa22.93■■□□□ 1.26
CHD1L-203ENST00000369259 CUX2O14529 1486 aa22.92■■□□□ 1.26
CHD1L-203ENST00000369259 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
CHD1L-203ENST00000369259 PRKCSHP14314 528 aaPredicted RBP22.87■■□□□ 1.25
CHD1L-203ENST00000369259 RRBP1Q9P2E9 1410 aaKnown RBP22.87■■□□□ 1.25
CHD1L-203ENST00000369259 DDX10Q13206 875 aaKnown RBP22.86■■□□□ 1.25
CHD1L-203ENST00000369259 RANGAP1P46060 587 aaPredicted RBP22.85■■□□□ 1.25
CHD1L-203ENST00000369259 ERICH6Q7L0X2 663 aa22.85■■□□□ 1.25
CHD1L-203ENST00000369259 MYT1LQ9UL68 1186 aa22.83■■□□□ 1.25
CHD1L-203ENST00000369259 SYNJ1O43426 1573 aa22.83■■□□□ 1.25
CHD1L-203ENST00000369259 CCER2I3L3R5 266 aa22.82■■□□□ 1.24
CHD1L-203ENST00000369259 KANK4Q5T7N3 995 aaPredicted RBP22.81■■□□□ 1.24
CHD1L-203ENST00000369259 TRIM52Q96A61 297 aa22.79■■□□□ 1.24
CHD1L-203ENST00000369259 PPP1R15AO75807 674 aaPredicted RBP22.79■■□□□ 1.24
CHD1L-203ENST00000369259 CDK11AQ9UQ88 783 aaPredicted RBP22.75■■□□□ 1.23
CHD1L-203ENST00000369259 CCNB3Q8WWL7 1395 aa22.73■■□□□ 1.23
CHD1L-203ENST00000369259 MAPKBP1O60336 1514 aa22.73■■□□□ 1.23
CHD1L-203ENST00000369259 ARAP1Q96P48 1450 aa22.72■■□□□ 1.23
CHD1L-203ENST00000369259 ANP32CO43423 234 aa22.7■■□□□ 1.22
CHD1L-203ENST00000369259 RAB3GAP2Q9H2M9 1393 aa22.68■■□□□ 1.22
CHD1L-203ENST00000369259 WDR97A6NE52 1622 aa22.67■■□□□ 1.22
CHD1L-203ENST00000369259 DEKP35659 375 aaKnown RBP22.65■■□□□ 1.22
CHD1L-203ENST00000369259 ERICH3Q5RHP9 1530 aa22.59■■□□□ 1.21
CHD1L-203ENST00000369259 TIMELESSQ9UNS1 1208 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms