RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 ARHGAP35Q9NRY4 1499 aa16.27■□□□□ 0.19
TPM3-212ENST00000368533 WDR62O43379 1518 aa16.26■□□□□ 0.19
TPM3-212ENST00000368533 ZEB1P37275 1124 aaPredicted RBP16.26■□□□□ 0.19
TPM3-212ENST00000368533 KANK4Q5T7N3 995 aaPredicted RBP16.24■□□□□ 0.19
TPM3-212ENST00000368533 THOC2Q8NI27 1593 aaKnown RBP16.24■□□□□ 0.19
TPM3-212ENST00000368533 ARID3CA6NKF2 412 aa16.23■□□□□ 0.19
TPM3-212ENST00000368533 FHOD3Q2V2M9 1422 aa16.23■□□□□ 0.19
TPM3-212ENST00000368533 IFT140Q96RY7 1462 aa16.21■□□□□ 0.19
TPM3-212ENST00000368533 HNRNPUL2Q1KMD3 747 aaKnown RBP16.2■□□□□ 0.18
TPM3-212ENST00000368533 CUL7Q14999 1698 aa16.19■□□□□ 0.18
TPM3-212ENST00000368533 MYT1Q01538 1121 aa16.19■□□□□ 0.18
TPM3-212ENST00000368533 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
TPM3-212ENST00000368533 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
TPM3-212ENST00000368533 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
TPM3-212ENST00000368533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.17■□□□□ 0.18
TPM3-212ENST00000368533 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
TPM3-212ENST00000368533 EIF4G3O43432 1585 aaKnown RBP16.16■□□□□ 0.18
TPM3-212ENST00000368533 FHAD1B1AJZ9 1412 aa16.13■□□□□ 0.17
TPM3-212ENST00000368533 ITGAEP38570 1179 aa16.12■□□□□ 0.17
TPM3-212ENST00000368533 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
TPM3-212ENST00000368533 CTTNBP2Q8WZ74 1663 aa16.09■□□□□ 0.17
TPM3-212ENST00000368533 NEUROD1Q13562 356 aa16.08■□□□□ 0.17
TPM3-212ENST00000368533 CCER1Q8TC90 406 aaPredicted RBP16.08■□□□□ 0.16
TPM3-212ENST00000368533 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
TPM3-212ENST00000368533 PCF11O94913 1555 aaKnown RBP16.03■□□□□ 0.16
TPM3-212ENST00000368533 ACIN1Q9UKV3 1341 aaKnown RBP16.01■□□□□ 0.15
TPM3-212ENST00000368533 GRIN2AQ12879 1464 aa16.01■□□□□ 0.15
TPM3-212ENST00000368533 IQGAP2Q13576 1575 aa15.98■□□□□ 0.15
TPM3-212ENST00000368533 FAM50AQ14320 339 aaKnown RBP15.96■□□□□ 0.14
TPM3-212ENST00000368533 SYNJ2O15056 1496 aa15.95■□□□□ 0.14
TPM3-212ENST00000368533 MAGI1Q96QZ7 1491 aaPredicted RBP15.94■□□□□ 0.14
TPM3-212ENST00000368533 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
TPM3-212ENST00000368533 JPH4Q96JJ6 628 aa15.93■□□□□ 0.14
TPM3-212ENST00000368533 CEP170Q5SW79 1584 aa15.93■□□□□ 0.14
TPM3-212ENST00000368533 FMN1Q68DA7 1419 aa15.92■□□□□ 0.14
TPM3-212ENST00000368533 TIAM1Q13009 1591 aa15.92■□□□□ 0.14
TPM3-212ENST00000368533 SAMD9Q5K651 1589 aa15.9■□□□□ 0.14
TPM3-212ENST00000368533 KIAA0586Q9BVV6 1533 aa15.9■□□□□ 0.14
TPM3-212ENST00000368533 PHLDB1Q86UU1 1377 aa15.89■□□□□ 0.13
TPM3-212ENST00000368533 LRRC9Q6ZRR7 1453 aa15.89■□□□□ 0.13
TPM3-212ENST00000368533 CASKIN1Q8WXD9 1431 aa15.89■□□□□ 0.13
TPM3-212ENST00000368533 MTUS2Q5JR59 1369 aa15.89■□□□□ 0.13
TPM3-212ENST00000368533 FYCO1Q9BQS8 1478 aa15.86■□□□□ 0.13
TPM3-212ENST00000368533 DISP1Q96F81 1524 aa15.86■□□□□ 0.13
TPM3-212ENST00000368533 CDK13Q14004 1512 aaKnown RBP15.85■□□□□ 0.13
TPM3-212ENST00000368533 CCNB3Q8WWL7 1395 aa15.83■□□□□ 0.13
TPM3-212ENST00000368533 LRRIQ1Q96JM4 1722 aa15.83■□□□□ 0.12
TPM3-212ENST00000368533 CHD1O14646 1710 aa15.82■□□□□ 0.12
TPM3-212ENST00000368533 PLB1Q6P1J6 1458 aa15.81■□□□□ 0.12
TPM3-212ENST00000368533 KIAA0556O60303 1618 aa15.8■□□□□ 0.12
TPM3-212ENST00000368533 UGGT2Q9NYU1 1516 aa15.8■□□□□ 0.12
TPM3-212ENST00000368533 NUP160Q12769 1436 aa15.8■□□□□ 0.12
TPM3-212ENST00000368533 CFAP43Q8NDM7 1665 aa15.78■□□□□ 0.12
TPM3-212ENST00000368533 PRG4Q92954 1404 aaPredicted RBP15.78■□□□□ 0.12
TPM3-212ENST00000368533 MAGI3Q5TCQ9 1506 aa15.77■□□□□ 0.11
TPM3-212ENST00000368533 RRBP1Q9P2E9 1410 aaKnown RBP15.75■□□□□ 0.11
TPM3-212ENST00000368533 EPRSP07814 1512 aaKnown RBP15.75■□□□□ 0.11
TPM3-212ENST00000368533 CARMIL2Q6F5E8 1435 aa15.75■□□□□ 0.11
TPM3-212ENST00000368533 CHIC2Q9UKJ5 165 aa15.74■□□□□ 0.11
TPM3-212ENST00000368533 NCOA2Q15596 1464 aa15.72■□□□□ 0.11
TPM3-212ENST00000368533 MAP3K1Q13233 1512 aa15.72■□□□□ 0.11
TPM3-212ENST00000368533 ERCC6L2Q5T890 1561 aa15.72■□□□□ 0.11
TPM3-212ENST00000368533 NUP153P49790 1475 aaKnown RBP15.71■□□□□ 0.11
TPM3-212ENST00000368533 HECW1Q76N89 1606 aa15.71■□□□□ 0.11
TPM3-212ENST00000368533 CENPBP07199 599 aaPredicted RBP15.7■□□□□ 0.1
TPM3-212ENST00000368533 ZNF777Q9ULD5 760 aaPredicted RBP15.7■□□□□ 0.1
TPM3-212ENST00000368533 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
TPM3-212ENST00000368533 PTPRGP23470 1445 aa15.68■□□□□ 0.1
TPM3-212ENST00000368533 ZNF644Q9H582 1327 aaPredicted RBP15.67■□□□□ 0.1
TPM3-212ENST00000368533 RAPGEF6Q8TEU7 1601 aa15.67■□□□□ 0.1
TPM3-212ENST00000368533 FGD6Q6ZV73 1430 aa15.66■□□□□ 0.1
TPM3-212ENST00000368533 YTHDC1Q96MU7 727 aaKnown RBP15.66■□□□□ 0.1
TPM3-212ENST00000368533 CCDC18Q5T9S5 1454 aa15.65■□□□□ 0.1
TPM3-212ENST00000368533 RRP7BPQ9NSQ0 103 aa15.65■□□□□ 0.1
TPM3-212ENST00000368533 KCNH8Q96L42 1107 aa15.63■□□□□ 0.09
TPM3-212ENST00000368533 CDK11AQ9UQ88 783 aaPredicted RBP15.63■□□□□ 0.09
TPM3-212ENST00000368533 RAB3GAP2Q9H2M9 1393 aa15.63■□□□□ 0.09
TPM3-212ENST00000368533 EHBP1L1Q8N3D4 1523 aa15.63■□□□□ 0.09
TPM3-212ENST00000368533 SUPT6HQ7KZ85 1726 aaKnown RBP15.62■□□□□ 0.09
TPM3-212ENST00000368533 MYOM3Q5VTT5 1437 aa15.62■□□□□ 0.09
TPM3-212ENST00000368533 PLEKHD1A6NEE1 506 aa15.61■□□□□ 0.09
TPM3-212ENST00000368533 PTPRKQ15262 1439 aa15.6■□□□□ 0.09
TPM3-212ENST00000368533 DHX57Q6P158 1386 aaKnown RBP15.57■□□□□ 0.08
TPM3-212ENST00000368533 ATP10BO94823 1461 aa15.57■□□□□ 0.08
TPM3-212ENST00000368533 CFDP1Q9UEE9 299 aaPredicted RBP15.56■□□□□ 0.08
TPM3-212ENST00000368533 KIF14Q15058 1648 aa15.55■□□□□ 0.08
TPM3-212ENST00000368533 OSCARQ8IYS5 282 aa15.54■□□□□ 0.08
TPM3-212ENST00000368533 SETD5Q9C0A6 1442 aa15.54■□□□□ 0.08
TPM3-212ENST00000368533 PTPN23Q9H3S7 1636 aa15.53■□□□□ 0.08
TPM3-212ENST00000368533 TROQ12816 1431 aaPredicted RBP15.53■□□□□ 0.08
TPM3-212ENST00000368533 ZNF316A6NFI3 1004 aaPredicted RBP15.52■□□□□ 0.08
TPM3-212ENST00000368533 BCL11AQ9H165 835 aa15.52■□□□□ 0.08
TPM3-212ENST00000368533 ABCA8O94911 1581 aa15.52■□□□□ 0.08
TPM3-212ENST00000368533 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
TPM3-212ENST00000368533 SIN3AQ96ST3 1273 aa15.51■□□□□ 0.07
TPM3-212ENST00000368533 ARHGEF11O15085 1522 aa15.5■□□□□ 0.07
TPM3-212ENST00000368533 TRIM52Q96A61 297 aa15.5■□□□□ 0.07
TPM3-212ENST00000368533 CLASP1Q7Z460 1538 aa15.49■□□□□ 0.07
TPM3-212ENST00000368533 SHROOM2Q13796 1616 aa15.48■□□□□ 0.07
TPM3-212ENST00000368533 HNRNPMP52272 730 aaKnown RBP eCLIP15.46■□□□□ 0.077e-7■■■□□ 16.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms