RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CHMP7Q8WUX9 453 aaPredicted RBP29.58■■■□□ 2.33
CLN3-206ENST00000360019 ARHGAP35Q9NRY4 1499 aa29.53■■■□□ 2.32
CLN3-206ENST00000360019 FBLN2P98095 1184 aa29.52■■■□□ 2.32
CLN3-206ENST00000360019 ARAP1Q96P48 1450 aa29.49■■■□□ 2.31
CLN3-206ENST00000360019 CEP170Q5SW79 1584 aa29.47■■■□□ 2.31
CLN3-206ENST00000360019 IQGAP2Q13576 1575 aa29.45■■■□□ 2.31
CLN3-206ENST00000360019 NUP160Q12769 1436 aa29.45■■■□□ 2.3
CLN3-206ENST00000360019 KIAA0586Q9BVV6 1533 aa29.44■■■□□ 2.3
CLN3-206ENST00000360019 CHD1O14646 1710 aa29.42■■■□□ 2.3
CLN3-206ENST00000360019 VPS8Q8N3P4 1428 aa29.41■■■□□ 2.3
CLN3-206ENST00000360019 EFCAB5A4FU69 1503 aa29.4■■■□□ 2.3
CLN3-206ENST00000360019 SAMD9Q5K651 1589 aa29.36■■■□□ 2.29
CLN3-206ENST00000360019 UGGT2Q9NYU1 1516 aa29.32■■■□□ 2.28
CLN3-206ENST00000360019 P3H3Q8IVL6 736 aa29.31■■■□□ 2.28
CLN3-206ENST00000360019 FHOD3Q2V2M9 1422 aa29.3■■■□□ 2.28
CLN3-206ENST00000360019 DISP1Q96F81 1524 aa29.21■■■□□ 2.27
CLN3-206ENST00000360019 JPH4Q96JJ6 628 aa29.18■■■□□ 2.26
CLN3-206ENST00000360019 KIAA0556O60303 1618 aa29.17■■■□□ 2.26
CLN3-206ENST00000360019 FMN1Q68DA7 1419 aa29.13■■■□□ 2.25
CLN3-206ENST00000360019 PPARGC1BQ86YN6 1023 aaKnown RBP29.11■■■□□ 2.25
CLN3-206ENST00000360019 CLASP1Q7Z460 1538 aa29.11■■■□□ 2.25
CLN3-206ENST00000360019 PCF11O94913 1555 aaKnown RBP29.11■■■□□ 2.25
CLN3-206ENST00000360019 SHROOM2Q13796 1616 aa29.07■■■□□ 2.24
CLN3-206ENST00000360019 CARMIL2Q6F5E8 1435 aa29.05■■■□□ 2.24
CLN3-206ENST00000360019 CASKIN1Q8WXD9 1431 aa29.05■■■□□ 2.24
CLN3-206ENST00000360019 FYCO1Q9BQS8 1478 aa29.04■■■□□ 2.24
CLN3-206ENST00000360019 PRG4Q92954 1404 aaPredicted RBP29.03■■■□□ 2.24
CLN3-206ENST00000360019 APLP2Q06481 763 aa29.03■■■□□ 2.24
CLN3-206ENST00000360019 ATP1B4Q9UN42 357 aaPredicted RBP28.94■■■□□ 2.22
CLN3-206ENST00000360019 MAP3K1Q13233 1512 aa28.94■■■□□ 2.22
CLN3-206ENST00000360019 TTBK1Q5TCY1 1321 aaPredicted RBP28.93■■■□□ 2.22
CLN3-206ENST00000360019 TIAM1Q13009 1591 aa28.93■■■□□ 2.22
CLN3-206ENST00000360019 OSCARQ8IYS5 282 aa28.92■■■□□ 2.22
CLN3-206ENST00000360019 ERCC6L2Q5T890 1561 aa28.91■■■□□ 2.22
CLN3-206ENST00000360019 KANK4Q5T7N3 995 aaPredicted RBP28.9■■■□□ 2.22
CLN3-206ENST00000360019 CFAP43Q8NDM7 1665 aa28.89■■■□□ 2.21
CLN3-206ENST00000360019 LRRIQ1Q96JM4 1722 aa28.87■■■□□ 2.21
CLN3-206ENST00000360019 HECW1Q76N89 1606 aa28.86■■■□□ 2.21
CLN3-206ENST00000360019 TRIM26Q12899 539 aaPredicted RBP28.85■■■□□ 2.21
CLN3-206ENST00000360019 RAPGEF6Q8TEU7 1601 aa28.84■■■□□ 2.21
CLN3-206ENST00000360019 PLB1Q6P1J6 1458 aa28.83■■■□□ 2.21
CLN3-206ENST00000360019 PTPRGP23470 1445 aa28.81■■■□□ 2.2
CLN3-206ENST00000360019 LRRC9Q6ZRR7 1453 aa28.8■■■□□ 2.2
CLN3-206ENST00000360019 NUP153P49790 1475 aaKnown RBP28.79■■■□□ 2.2
CLN3-206ENST00000360019 EPRSP07814 1512 aaKnown RBP28.78■■■□□ 2.2
CLN3-206ENST00000360019 CCDC18Q5T9S5 1454 aa28.78■■■□□ 2.2
CLN3-206ENST00000360019 PCGF6Q9BYE7 350 aa28.78■■■□□ 2.2
CLN3-206ENST00000360019 ABCA8O94911 1581 aa28.77■■■□□ 2.2
CLN3-206ENST00000360019 CDK13Q14004 1512 aaKnown RBP28.73■■■□□ 2.19
CLN3-206ENST00000360019 ARID3CA6NKF2 412 aa28.7■■■□□ 2.18
CLN3-206ENST00000360019 MAGI3Q5TCQ9 1506 aa28.66■■■□□ 2.18
CLN3-206ENST00000360019 UACAQ9BZF9 1416 aa28.65■■■□□ 2.18
CLN3-206ENST00000360019 MTUS2Q5JR59 1369 aa28.64■■■□□ 2.18
CLN3-206ENST00000360019 EHBP1L1Q8N3D4 1523 aa28.61■■■□□ 2.17
CLN3-206ENST00000360019 ABCC2Q92887 1545 aa28.57■■■□□ 2.16
CLN3-206ENST00000360019 ATP10BO94823 1461 aa28.57■■■□□ 2.16
CLN3-206ENST00000360019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
CLN3-206ENST00000360019 HNRNPUL2Q1KMD3 747 aaKnown RBP28.55■■■□□ 2.16
CLN3-206ENST00000360019 PHLDB1Q86UU1 1377 aa28.54■■■□□ 2.16
CLN3-206ENST00000360019 UHRF1BP1LA0JNW5 1464 aa28.52■■■□□ 2.16
CLN3-206ENST00000360019 SUPT6HQ7KZ85 1726 aaKnown RBP28.5■■■□□ 2.15
CLN3-206ENST00000360019 NCOA2Q15596 1464 aa28.5■■■□□ 2.15
CLN3-206ENST00000360019 CDK11AQ9UQ88 783 aaPredicted RBP28.5■■■□□ 2.15
CLN3-206ENST00000360019 RRBP1Q9P2E9 1410 aaKnown RBP28.49■■■□□ 2.15
CLN3-206ENST00000360019 ARHGEF11O15085 1522 aa28.48■■■□□ 2.15
CLN3-206ENST00000360019 TROQ12816 1431 aaPredicted RBP28.45■■■□□ 2.15
CLN3-206ENST00000360019 ADCY10Q96PN6 1610 aa28.44■■■□□ 2.14
CLN3-206ENST00000360019 KDM5BQ9UGL1 1544 aa28.41■■■□□ 2.14
CLN3-206ENST00000360019 CCNB3Q8WWL7 1395 aa28.41■■■□□ 2.14
CLN3-206ENST00000360019 PLEKHD1A6NEE1 506 aa28.39■■■□□ 2.13
CLN3-206ENST00000360019 ZCCHC11Q5TAX3 1644 aaKnown RBP28.38■■■□□ 2.13
CLN3-206ENST00000360019 MYOM3Q5VTT5 1437 aa28.36■■■□□ 2.13
CLN3-206ENST00000360019 KIF14Q15058 1648 aa28.35■■■□□ 2.13
CLN3-206ENST00000360019 RIMBP3CA6NJZ7 1639 aa28.35■■■□□ 2.13
CLN3-206ENST00000360019 RIMBP3BA6NNM3 1639 aa28.35■■■□□ 2.13
CLN3-206ENST00000360019 RIMBP3Q9UFD9 1639 aa28.35■■■□□ 2.13
CLN3-206ENST00000360019 FGD6Q6ZV73 1430 aa28.34■■■□□ 2.13
CLN3-206ENST00000360019 ABCC10Q5T3U5 1492 aa28.24■■■□□ 2.11
CLN3-206ENST00000360019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.23■■■□□ 2.11
CLN3-206ENST00000360019 FAM50AQ14320 339 aaKnown RBP28.23■■■□□ 2.11
CLN3-206ENST00000360019 MIA2Q96PC5 1412 aa28.22■■■□□ 2.11
CLN3-206ENST00000360019 PTPN23Q9H3S7 1636 aa28.2■■■□□ 2.11
CLN3-206ENST00000360019 GPATCH8Q9UKJ3 1502 aaKnown RBP28.2■■■□□ 2.1
CLN3-206ENST00000360019 CYB5RLQ6IPT4 315 aa28.19■■■□□ 2.1
CLN3-206ENST00000360019 TCOF1Q13428 1488 aaKnown RBP28.18■■■□□ 2.1
CLN3-206ENST00000360019 ITSN2Q9NZM3 1697 aa28.16■■■□□ 2.1
CLN3-206ENST00000360019 WDR7Q9Y4E6 1490 aa28.15■■■□□ 2.1
CLN3-206ENST00000360019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.14■■■□□ 2.1
CLN3-206ENST00000360019 CDC42BPAQ5VT25 1732 aa28.14■■■□□ 2.09
CLN3-206ENST00000360019 ITGAEP38570 1179 aa28.13■■■□□ 2.09
CLN3-206ENST00000360019 TTC37Q6PGP7 1564 aa28.13■■■□□ 2.09
CLN3-206ENST00000360019 KCNH8Q96L42 1107 aa28.13■■■□□ 2.09
CLN3-206ENST00000360019 ASXL2Q76L83 1435 aa28.12■■■□□ 2.09
CLN3-206ENST00000360019 NPM1P06748 294 aaKnown RBP eCLIP28.12■■■□□ 2.09
CLN3-206ENST00000360019 CFDP1Q9UEE9 299 aaPredicted RBP28.09■■■□□ 2.09
CLN3-206ENST00000360019 ZNF644Q9H582 1327 aaPredicted RBP28.06■■■□□ 2.08
CLN3-206ENST00000360019 PREX2Q70Z35 1606 aa28.05■■■□□ 2.08
CLN3-206ENST00000360019 CAMSAP2Q08AD1 1489 aa28.03■■■□□ 2.08
CLN3-206ENST00000360019 PTPRKQ15262 1439 aa28.03■■■□□ 2.08
CLN3-206ENST00000360019 CDC42BPBQ9Y5S2 1711 aa28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms