RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 NISCHQ9Y2I1 1504 aa42.95■■■■■ 4.47
CLN3-206ENST00000360019 CCDC180Q9P1Z9 1646 aa37.57■■■■□ 3.6
CLN3-206ENST00000360019 ZCCHC6Q5VYS8 1495 aaKnown RBP36.03■■■■□ 3.36
CLN3-206ENST00000360019 ABCC9O60706 1549 aa35.81■■■■□ 3.32
CLN3-206ENST00000360019 DCAF1Q9Y4B6 1507 aa35.51■■■■□ 3.28
CLN3-206ENST00000360019 DCAF8L2P0C7V8 631 aa35.5■■■■□ 3.27
CLN3-206ENST00000360019 MYO15BQ96JP2 1530 aa35.21■■■■□ 3.23
CLN3-206ENST00000360019 NACADO15069 1562 aa35.06■■■■□ 3.2
CLN3-206ENST00000360019 RB1CC1Q8TDY2 1594 aa34.83■■■■□ 3.17
CLN3-206ENST00000360019 SHROOM4Q9ULL8 1493 aa34.8■■■■□ 3.16
CLN3-206ENST00000360019 SCRIBQ14160 1630 aa34.52■■■■□ 3.12
CLN3-206ENST00000360019 UNC13AQ9UPW8 1703 aa34.13■■■■□ 3.05
CLN3-206ENST00000360019 BICRAQ9NZM4 1560 aa33.83■■■■□ 3.01
CLN3-206ENST00000360019 PABPN1Q86U42 306 aaKnown RBP eCLIP33.7■■■□□ 2.99
CLN3-206ENST00000360019 CECR2Q9BXF3 1484 aa33.41■■■□□ 2.94
CLN3-206ENST00000360019 SUPT5HO00267 1087 aaKnown RBP33.32■■■□□ 2.92
CLN3-206ENST00000360019 RSF1Q96T23 1441 aaPredicted RBP33.21■■■□□ 2.91
CLN3-206ENST00000360019 MROH2BQ7Z745 1585 aa33.18■■■□□ 2.9
CLN3-206ENST00000360019 BAZ1AQ9NRL2 1556 aaPredicted RBP33.18■■■□□ 2.9
CLN3-206ENST00000360019 SMARCA4P51532 1647 aa33.08■■■□□ 2.89
CLN3-206ENST00000360019 WIZO95785 1651 aa32.88■■■□□ 2.85
CLN3-206ENST00000360019 EIF4G1Q04637 1599 aaKnown RBP32.82■■■□□ 2.84
CLN3-206ENST00000360019 PEG3Q9GZU2 1588 aa32.7■■■□□ 2.83
CLN3-206ENST00000360019 ATAD2BQ9ULI0 1458 aa32.62■■■□□ 2.81
CLN3-206ENST00000360019 SMARCA2P51531 1590 aa32.56■■■□□ 2.8
CLN3-206ENST00000360019 TOP2AP11388 1531 aaKnown RBP32.53■■■□□ 2.8
CLN3-206ENST00000360019 CC2D2AQ9P2K1 1620 aa32.4■■■□□ 2.78
CLN3-206ENST00000360019 BAZ1BQ9UIG0 1483 aaKnown RBP32.39■■■□□ 2.78
CLN3-206ENST00000360019 NCAPD3P42695 1498 aa32.38■■■□□ 2.77
CLN3-206ENST00000360019 HMGXB3Q12766 1538 aa32.31■■■□□ 2.76
CLN3-206ENST00000360019 CCDC88BA6NC98 1476 aa32.19■■■□□ 2.74
CLN3-206ENST00000360019 DNAJC5BQ9UF47 199 aa31.86■■■□□ 2.69
CLN3-206ENST00000360019 CHIC1Q5VXU3 224 aa31.76■■■□□ 2.67
CLN3-206ENST00000360019 CFTRP13569 1480 aa31.58■■■□□ 2.65
CLN3-206ENST00000360019 CADPSQ9ULU8 1353 aa31.52■■■□□ 2.64
CLN3-206ENST00000360019 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
CLN3-206ENST00000360019 PRDM2Q13029 1718 aa31.37■■■□□ 2.61
CLN3-206ENST00000360019 NESP48681 1621 aa31.35■■■□□ 2.61
CLN3-206ENST00000360019 TRIM41Q8WV44 630 aa31.35■■■□□ 2.61
CLN3-206ENST00000360019 LAMC3Q9Y6N6 1575 aa31.31■■■□□ 2.6
CLN3-206ENST00000360019 WRNQ14191 1432 aaPredicted RBP eCLIP31.25■■■□□ 2.59
CLN3-206ENST00000360019 FANCD2Q9BXW9 1451 aa31.17■■■□□ 2.58
CLN3-206ENST00000360019 SYNJ1O43426 1573 aa31.16■■■□□ 2.58
CLN3-206ENST00000360019 PDS5BQ9NTI5 1447 aa31.07■■■□□ 2.56
CLN3-206ENST00000360019 CUX1P39880 1505 aa31.04■■■□□ 2.56
CLN3-206ENST00000360019 TOP2BQ02880 1626 aa31.04■■■□□ 2.56
CLN3-206ENST00000360019 BIVM-ERCC5R4GMW8 1640 aa31.01■■■□□ 2.55
CLN3-206ENST00000360019 CEP164Q9UPV0 1460 aa31■■■□□ 2.55
CLN3-206ENST00000360019 KIF21AQ7Z4S6 1674 aa30.96■■■□□ 2.55
CLN3-206ENST00000360019 DNMBPQ6XZF7 1577 aa30.84■■■□□ 2.53
CLN3-206ENST00000360019 URB2Q14146 1524 aaKnown RBP30.82■■■□□ 2.52
CLN3-206ENST00000360019 TOPBP1Q92547 1522 aa30.81■■■□□ 2.52
CLN3-206ENST00000360019 SOGA1O94964 1423 aa30.78■■■□□ 2.52
CLN3-206ENST00000360019 FAM9AQ8IZU1 332 aaPredicted RBP30.77■■■□□ 2.52
CLN3-206ENST00000360019 FGD5Q6ZNL6 1462 aa30.74■■■□□ 2.51
CLN3-206ENST00000360019 ERCC6Q03468 1493 aa30.7■■■□□ 2.51
CLN3-206ENST00000360019 MRC2Q9UBG0 1479 aa30.7■■■□□ 2.51
CLN3-206ENST00000360019 RUSC2Q8N2Y8 1516 aa30.69■■■□□ 2.5
CLN3-206ENST00000360019 POLA1P09884 1462 aaPredicted RBP30.65■■■□□ 2.5
CLN3-206ENST00000360019 EEA1Q15075 1411 aa30.62■■■□□ 2.49
CLN3-206ENST00000360019 WDR62O43379 1518 aa30.57■■■□□ 2.48
CLN3-206ENST00000360019 THOC2Q8NI27 1593 aaKnown RBP30.55■■■□□ 2.48
CLN3-206ENST00000360019 RAD54L2Q9Y4B4 1467 aa30.54■■■□□ 2.48
CLN3-206ENST00000360019 LOC105371045A0A1W2PR82 267 aa30.53■■■□□ 2.48
CLN3-206ENST00000360019 CSRNP3Q8WYN3 585 aa30.49■■■□□ 2.47
CLN3-206ENST00000360019 KIF27Q86VH2 1401 aa30.47■■■□□ 2.47
CLN3-206ENST00000360019 CUX2O14529 1486 aa30.47■■■□□ 2.47
CLN3-206ENST00000360019 ABCA10Q8WWZ4 1543 aa30.46■■■□□ 2.47
CLN3-206ENST00000360019 WDR97A6NE52 1622 aa30.4■■■□□ 2.46
CLN3-206ENST00000360019 TARBP1Q13395 1621 aaKnown RBP30.38■■■□□ 2.45
CLN3-206ENST00000360019 EHMT2Q96KQ7 1210 aa30.33■■■□□ 2.45
CLN3-206ENST00000360019 IFT140Q96RY7 1462 aa30.28■■■□□ 2.44
CLN3-206ENST00000360019 KIF21BO75037 1637 aa30.26■■■□□ 2.44
CLN3-206ENST00000360019 IGF1RP08069 1367 aa30.26■■■□□ 2.43
CLN3-206ENST00000360019 TDRD9Q8NDG6 1382 aaKnown RBP30.26■■■□□ 2.43
CLN3-206ENST00000360019 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
CLN3-206ENST00000360019 PRXQ9BXM0 1461 aa30.23■■■□□ 2.43
CLN3-206ENST00000360019 GOLGA3Q08378 1498 aa30.21■■■□□ 2.43
CLN3-206ENST00000360019 GAPVD1Q14C86 1478 aa30.18■■■□□ 2.42
CLN3-206ENST00000360019 RAPGEF2Q9Y4G8 1499 aa30.17■■■□□ 2.42
CLN3-206ENST00000360019 ZNF608Q9ULD9 1512 aaPredicted RBP30.15■■■□□ 2.42
CLN3-206ENST00000360019 AQRO60306 1485 aaKnown RBP eCLIP30.12■■■□□ 2.416e-6■■■■□ 25.1
CLN3-206ENST00000360019 ERICH3Q5RHP9 1530 aa30.12■■■□□ 2.41
CLN3-206ENST00000360019 CARMIL1Q5VZK9 1371 aa30.08■■■□□ 2.41
CLN3-206ENST00000360019 UBTFP17480 764 aaKnown RBP30.05■■■□□ 2.4
CLN3-206ENST00000360019 TNIKQ9UKE5 1360 aa30.05■■■□□ 2.4
CLN3-206ENST00000360019 CUL7Q14999 1698 aa30.04■■■□□ 2.4
CLN3-206ENST00000360019 EIF4G3O43432 1585 aaKnown RBP30.03■■■□□ 2.4
CLN3-206ENST00000360019 PBRM1Q86U86 1689 aa30.03■■■□□ 2.4
CLN3-206ENST00000360019 GRIN2BQ13224 1484 aa29.99■■■□□ 2.39
CLN3-206ENST00000360019 CEP162Q5TB80 1403 aa29.88■■■□□ 2.37
CLN3-206ENST00000360019 ADAMTS12P58397 1594 aa29.87■■■□□ 2.37
CLN3-206ENST00000360019 FHAD1B1AJZ9 1412 aa29.85■■■□□ 2.37
CLN3-206ENST00000360019 SNAPC4Q5SXM2 1469 aa29.84■■■□□ 2.37
CLN3-206ENST00000360019 MAGI1Q96QZ7 1491 aaPredicted RBP29.77■■■□□ 2.36
CLN3-206ENST00000360019 CLIP1P30622 1438 aa29.7■■■□□ 2.35
CLN3-206ENST00000360019 SYNJ2O15056 1496 aa29.67■■■□□ 2.34
CLN3-206ENST00000360019 RANGAP1P46060 587 aaPredicted RBP29.66■■■□□ 2.34
CLN3-206ENST00000360019 CTTNBP2Q8WZ74 1663 aa29.65■■■□□ 2.34
CLN3-206ENST00000360019 GRIN2AQ12879 1464 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms