RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 GRIN2AQ12879 1464 aa36.62■■■■□ 3.45
SDF4-202ENST00000360001 ARAP1Q96P48 1450 aa36.6■■■■□ 3.45
SDF4-202ENST00000360001 VPS8Q8N3P4 1428 aa36.56■■■■□ 3.44
SDF4-202ENST00000360001 CHMP7Q8WUX9 453 aaPredicted RBP36.52■■■■□ 3.44
SDF4-202ENST00000360001 EFCAB5A4FU69 1503 aa36.46■■■■□ 3.43
SDF4-202ENST00000360001 IQGAP2Q13576 1575 aa36.46■■■■□ 3.43
SDF4-202ENST00000360001 FBLN2P98095 1184 aa36.43■■■■□ 3.42
SDF4-202ENST00000360001 KIAA0586Q9BVV6 1533 aa36.41■■■■□ 3.42
SDF4-202ENST00000360001 CEP170Q5SW79 1584 aa36.4■■■■□ 3.42
SDF4-202ENST00000360001 SAMD9Q5K651 1589 aa36.38■■■■□ 3.41
SDF4-202ENST00000360001 NUP160Q12769 1436 aa36.37■■■■□ 3.41
SDF4-202ENST00000360001 P3H3Q8IVL6 736 aa36.31■■■■□ 3.4
SDF4-202ENST00000360001 CHD1O14646 1710 aa36.31■■■■□ 3.4
SDF4-202ENST00000360001 FHOD3Q2V2M9 1422 aa36.31■■■■□ 3.4
SDF4-202ENST00000360001 UGGT2Q9NYU1 1516 aa36.29■■■■□ 3.4
SDF4-202ENST00000360001 PPARGC1BQ86YN6 1023 aaKnown RBP36.24■■■■□ 3.39
SDF4-202ENST00000360001 DISP1Q96F81 1524 aa36.13■■■■□ 3.37
SDF4-202ENST00000360001 FMN1Q68DA7 1419 aa36.12■■■■□ 3.37
SDF4-202ENST00000360001 PCF11O94913 1555 aaKnown RBP36.11■■■■□ 3.37
SDF4-202ENST00000360001 APLP2Q06481 763 aa36.1■■■■□ 3.37
SDF4-202ENST00000360001 KIAA0556O60303 1618 aa36.09■■■■□ 3.37
SDF4-202ENST00000360001 TRIM26Q12899 539 aaPredicted RBP36.07■■■■□ 3.37
SDF4-202ENST00000360001 JPH4Q96JJ6 628 aa36.05■■■■□ 3.36
SDF4-202ENST00000360001 CASKIN1Q8WXD9 1431 aa36.04■■■■□ 3.36
SDF4-202ENST00000360001 FYCO1Q9BQS8 1478 aa36.03■■■■□ 3.36
SDF4-202ENST00000360001 PCGF6Q9BYE7 350 aa36■■■■□ 3.35
SDF4-202ENST00000360001 TTBK1Q5TCY1 1321 aaPredicted RBP35.98■■■■□ 3.35
SDF4-202ENST00000360001 MAP3K1Q13233 1512 aa35.96■■■■□ 3.35
SDF4-202ENST00000360001 TIAM1Q13009 1591 aa35.93■■■■□ 3.34
SDF4-202ENST00000360001 CARMIL2Q6F5E8 1435 aa35.93■■■■□ 3.34
SDF4-202ENST00000360001 CLASP1Q7Z460 1538 aa35.91■■■■□ 3.34
SDF4-202ENST00000360001 SHROOM2Q13796 1616 aa35.91■■■■□ 3.34
SDF4-202ENST00000360001 KANK4Q5T7N3 995 aaPredicted RBP35.89■■■■□ 3.34
SDF4-202ENST00000360001 CFAP43Q8NDM7 1665 aa35.88■■■■□ 3.33
SDF4-202ENST00000360001 ATP1B4Q9UN42 357 aaPredicted RBP35.86■■■■□ 3.33
SDF4-202ENST00000360001 PRG4Q92954 1404 aaPredicted RBP35.85■■■■□ 3.33
SDF4-202ENST00000360001 LRRIQ1Q96JM4 1722 aa35.82■■■■□ 3.32
SDF4-202ENST00000360001 HECW1Q76N89 1606 aa35.78■■■■□ 3.32
SDF4-202ENST00000360001 LRRC9Q6ZRR7 1453 aa35.76■■■■□ 3.31
SDF4-202ENST00000360001 RAPGEF6Q8TEU7 1601 aa35.71■■■■□ 3.31
SDF4-202ENST00000360001 CCDC18Q5T9S5 1454 aa35.68■■■■□ 3.3
SDF4-202ENST00000360001 ERCC6L2Q5T890 1561 aa35.67■■■■□ 3.3
SDF4-202ENST00000360001 EPRSP07814 1512 aaKnown RBP35.66■■■■□ 3.3
SDF4-202ENST00000360001 PLB1Q6P1J6 1458 aa35.65■■■■□ 3.3
SDF4-202ENST00000360001 NUP153P49790 1475 aaKnown RBP35.63■■■■□ 3.29
SDF4-202ENST00000360001 PTPRGP23470 1445 aa35.6■■■■□ 3.29
SDF4-202ENST00000360001 OSCARQ8IYS5 282 aa35.6■■■■□ 3.29
SDF4-202ENST00000360001 ABCA8O94911 1581 aa35.59■■■■□ 3.29
SDF4-202ENST00000360001 CDK13Q14004 1512 aaKnown RBP35.59■■■■□ 3.29
SDF4-202ENST00000360001 MTUS2Q5JR59 1369 aa35.53■■■■□ 3.28
SDF4-202ENST00000360001 MAGI3Q5TCQ9 1506 aa35.51■■■■□ 3.28
SDF4-202ENST00000360001 ARID3CA6NKF2 412 aa35.49■■■■□ 3.27
SDF4-202ENST00000360001 EHBP1L1Q8N3D4 1523 aa35.49■■■■□ 3.27
SDF4-202ENST00000360001 PHLDB1Q86UU1 1377 aa35.43■■■■□ 3.26
SDF4-202ENST00000360001 RRBP1Q9P2E9 1410 aaKnown RBP35.43■■■■□ 3.26
SDF4-202ENST00000360001 UACAQ9BZF9 1416 aa35.41■■■■□ 3.26
SDF4-202ENST00000360001 SUPT6HQ7KZ85 1726 aaKnown RBP35.39■■■■□ 3.26
SDF4-202ENST00000360001 NCOA2Q15596 1464 aa35.35■■■■□ 3.25
SDF4-202ENST00000360001 ATP10BO94823 1461 aa35.35■■■■□ 3.25
SDF4-202ENST00000360001 ARHGEF11O15085 1522 aa35.33■■■■□ 3.25
SDF4-202ENST00000360001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.33■■■■□ 3.25
SDF4-202ENST00000360001 HNRNPUL2Q1KMD3 747 aaKnown RBP35.33■■■■□ 3.25
SDF4-202ENST00000360001 CCNB3Q8WWL7 1395 aa35.32■■■■□ 3.24
SDF4-202ENST00000360001 ABCC2Q92887 1545 aa35.32■■■■□ 3.24
SDF4-202ENST00000360001 CDK11AQ9UQ88 783 aaPredicted RBP35.31■■■■□ 3.24
SDF4-202ENST00000360001 TROQ12816 1431 aaPredicted RBP35.25■■■■□ 3.23
SDF4-202ENST00000360001 UHRF1BP1LA0JNW5 1464 aa35.24■■■■□ 3.23
SDF4-202ENST00000360001 MYOM3Q5VTT5 1437 aa35.2■■■■□ 3.23
SDF4-202ENST00000360001 FGD6Q6ZV73 1430 aa35.18■■■■□ 3.22
SDF4-202ENST00000360001 ADCY10Q96PN6 1610 aa35.16■■■■□ 3.22
SDF4-202ENST00000360001 PLEKHD1A6NEE1 506 aa35.14■■■■□ 3.22
SDF4-202ENST00000360001 KIF14Q15058 1648 aa35.11■■■■□ 3.21
SDF4-202ENST00000360001 KDM5BQ9UGL1 1544 aa35.1■■■■□ 3.21
SDF4-202ENST00000360001 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.1■■■■□ 3.212e-6■■■■■ 26.9
SDF4-202ENST00000360001 ZCCHC11Q5TAX3 1644 aaKnown RBP35.08■■■■□ 3.21
SDF4-202ENST00000360001 FAM50AQ14320 339 aaKnown RBP35.05■■■■□ 3.2
SDF4-202ENST00000360001 PTPN23Q9H3S7 1636 aa35.02■■■■□ 3.2
SDF4-202ENST00000360001 MIA2Q96PC5 1412 aa35.02■■■■□ 3.2
SDF4-202ENST00000360001 TCOF1Q13428 1488 aaKnown RBP34.98■■■■□ 3.19
SDF4-202ENST00000360001 ABCC10Q5T3U5 1492 aa34.98■■■■□ 3.19
SDF4-202ENST00000360001 ITGAEP38570 1179 aa34.96■■■■□ 3.19
SDF4-202ENST00000360001 GPATCH8Q9UKJ3 1502 aaKnown RBP34.94■■■■□ 3.18
SDF4-202ENST00000360001 ITSN2Q9NZM3 1697 aa34.93■■■■□ 3.18
SDF4-202ENST00000360001 RIMBP3CA6NJZ7 1639 aa34.88■■■■□ 3.17
SDF4-202ENST00000360001 RIMBP3BA6NNM3 1639 aa34.88■■■■□ 3.17
SDF4-202ENST00000360001 RIMBP3Q9UFD9 1639 aa34.88■■■■□ 3.17
SDF4-202ENST00000360001 CDC42BPAQ5VT25 1732 aa34.88■■■■□ 3.17
SDF4-202ENST00000360001 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.81■■■■□ 3.163e-6■■■□□ 17.3
SDF4-202ENST00000360001 CFDP1Q9UEE9 299 aaPredicted RBP34.81■■■■□ 3.16
SDF4-202ENST00000360001 HRCP23327 699 aa34.8■■■■□ 3.16
SDF4-202ENST00000360001 TTC37Q6PGP7 1564 aa34.8■■■■□ 3.16
SDF4-202ENST00000360001 PTPRKQ15262 1439 aa34.79■■■■□ 3.16
SDF4-202ENST00000360001 WDR7Q9Y4E6 1490 aa34.78■■■■□ 3.16
SDF4-202ENST00000360001 ZNF644Q9H582 1327 aaPredicted RBP34.77■■■■□ 3.16
SDF4-202ENST00000360001 KCNH8Q96L42 1107 aa34.76■■■■□ 3.15
SDF4-202ENST00000360001 CAMSAP2Q08AD1 1489 aa34.75■■■■□ 3.15
SDF4-202ENST00000360001 PREX2Q70Z35 1606 aa34.74■■■■□ 3.15
SDF4-202ENST00000360001 ASXL2Q76L83 1435 aa34.72■■■■□ 3.15
SDF4-202ENST00000360001 CDC42BPBQ9Y5S2 1711 aa34.72■■■■□ 3.15
SDF4-202ENST00000360001 NPM1P06748 294 aaKnown RBP eCLIP34.71■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms