RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 RIMBP3BA6NNM3 1639 aa34.49■■■■□ 3.11
SMARCB1-202ENST00000344921 RIMBP3Q9UFD9 1639 aa34.49■■■■□ 3.11
SMARCB1-202ENST00000344921 KIAA0586Q9BVV6 1533 aa34.45■■■■□ 3.1
SMARCB1-202ENST00000344921 JPH4Q96JJ6 628 aa34.42■■■■□ 3.1
SMARCB1-202ENST00000344921 SHROOM2Q13796 1616 aa34.37■■■■□ 3.09
SMARCB1-202ENST00000344921 PRG4Q92954 1404 aaPredicted RBP34.31■■■■□ 3.08
SMARCB1-202ENST00000344921 IQGAP2Q13576 1575 aa34.31■■■■□ 3.08
SMARCB1-202ENST00000344921 CYB5RLQ6IPT4 315 aa34.29■■■■□ 3.08
SMARCB1-202ENST00000344921 ERCC6L2Q5T890 1561 aa34.27■■■■□ 3.08
SMARCB1-202ENST00000344921 CTTNBP2Q8WZ74 1663 aa34.27■■■■□ 3.08
SMARCB1-202ENST00000344921 EHMT2Q96KQ7 1210 aa34.27■■■■□ 3.08
SMARCB1-202ENST00000344921 KIF21BO75037 1637 aa34.26■■■■□ 3.08
SMARCB1-202ENST00000344921 ARAP1Q96P48 1450 aa34.25■■■■□ 3.07
SMARCB1-202ENST00000344921 UBTFP17480 764 aaKnown RBP34.13■■■■□ 3.05
SMARCB1-202ENST00000344921 CARMIL2Q6F5E8 1435 aa34.12■■■■□ 3.05
SMARCB1-202ENST00000344921 GOLGA3Q08378 1498 aa34.12■■■■□ 3.05
SMARCB1-202ENST00000344921 UGGT2Q9NYU1 1516 aa34.09■■■■□ 3.05
SMARCB1-202ENST00000344921 TTBK1Q5TCY1 1321 aaPredicted RBP34.04■■■■□ 3.04
SMARCB1-202ENST00000344921 RANGAP1P46060 587 aaPredicted RBP34.02■■■■□ 3.04
SMARCB1-202ENST00000344921 DISP1Q96F81 1524 aa34.02■■■■□ 3.04
SMARCB1-202ENST00000344921 TNIKQ9UKE5 1360 aa33.97■■■■□ 3.03
SMARCB1-202ENST00000344921 KIAA0556O60303 1618 aa33.97■■■■□ 3.03
SMARCB1-202ENST00000344921 PTPRGP23470 1445 aa33.95■■■■□ 3.02
SMARCB1-202ENST00000344921 P3H3Q8IVL6 736 aa33.89■■■■□ 3.02
SMARCB1-202ENST00000344921 SAMD9Q5K651 1589 aa33.8■■■■□ 3
SMARCB1-202ENST00000344921 EFCAB5A4FU69 1503 aa33.72■■■□□ 2.99
SMARCB1-202ENST00000344921 NPM1P06748 294 aaKnown RBP eCLIP33.72■■■□□ 2.99
SMARCB1-202ENST00000344921 ADCY10Q96PN6 1610 aa33.71■■■□□ 2.99
SMARCB1-202ENST00000344921 UACAQ9BZF9 1416 aa33.7■■■□□ 2.99
SMARCB1-202ENST00000344921 LOC105371045A0A1W2PR82 267 aa33.7■■■□□ 2.98
SMARCB1-202ENST00000344921 FHOD3Q2V2M9 1422 aa33.68■■■□□ 2.98
SMARCB1-202ENST00000344921 PLB1Q6P1J6 1458 aa33.63■■■□□ 2.97
SMARCB1-202ENST00000344921 ABCC2Q92887 1545 aa33.62■■■□□ 2.97
SMARCB1-202ENST00000344921 UHRF1BP1LA0JNW5 1464 aa33.61■■■□□ 2.97
SMARCB1-202ENST00000344921 ARHGAP35Q9NRY4 1499 aa33.61■■■□□ 2.97
SMARCB1-202ENST00000344921 TRHP20396 242 aaPredicted RBP33.56■■■□□ 2.96
SMARCB1-202ENST00000344921 ABCA8O94911 1581 aa33.56■■■□□ 2.96
SMARCB1-202ENST00000344921 CLIP1P30622 1438 aa33.54■■■□□ 2.96
SMARCB1-202ENST00000344921 RAPGEF6Q8TEU7 1601 aa33.47■■■□□ 2.95
SMARCB1-202ENST00000344921 KDM5BQ9UGL1 1544 aa33.46■■■□□ 2.95
SMARCB1-202ENST00000344921 ARID3CA6NKF2 412 aa33.45■■■□□ 2.95
SMARCB1-202ENST00000344921 FMN1Q68DA7 1419 aa33.45■■■□□ 2.95
SMARCB1-202ENST00000344921 CEP162Q5TB80 1403 aa33.44■■■□□ 2.94
SMARCB1-202ENST00000344921 MAPKBP1O60336 1514 aa33.43■■■□□ 2.94
SMARCB1-202ENST00000344921 ZCCHC11Q5TAX3 1644 aaKnown RBP33.42■■■□□ 2.94
SMARCB1-202ENST00000344921 ATP1B4Q9UN42 357 aaPredicted RBP33.39■■■□□ 2.94
SMARCB1-202ENST00000344921 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.36■■■□□ 2.93
SMARCB1-202ENST00000344921 HNRNPUL2Q1KMD3 747 aaKnown RBP33.36■■■□□ 2.93
SMARCB1-202ENST00000344921 ASXL2Q76L83 1435 aa33.35■■■□□ 2.93
SMARCB1-202ENST00000344921 NUP153P49790 1475 aaKnown RBP33.33■■■□□ 2.93
SMARCB1-202ENST00000344921 ATP10BO94823 1461 aa33.32■■■□□ 2.92
SMARCB1-202ENST00000344921 FAM69CQ0P6D2 419 aa33.28■■■□□ 2.92
SMARCB1-202ENST00000344921 ABCC10Q5T3U5 1492 aa33.27■■■□□ 2.92
SMARCB1-202ENST00000344921 HECW1Q76N89 1606 aa33.25■■■□□ 2.91
SMARCB1-202ENST00000344921 KIF13AQ9H1H9 1805 aa33.22■■■□□ 2.91
SMARCB1-202ENST00000344921 DIP2BQ9P265 1576 aa33.21■■■□□ 2.91
SMARCB1-202ENST00000344921 WDR7Q9Y4E6 1490 aa33.21■■■□□ 2.91
SMARCB1-202ENST00000344921 CASKIN1Q8WXD9 1431 aa33.19■■■□□ 2.9
SMARCB1-202ENST00000344921 PCF11O94913 1555 aaKnown RBP33.19■■■□□ 2.9
SMARCB1-202ENST00000344921 KCNH8Q96L42 1107 aa33.19■■■□□ 2.9
SMARCB1-202ENST00000344921 EPRSP07814 1512 aaKnown RBP33.15■■■□□ 2.9
SMARCB1-202ENST00000344921 CDK13Q14004 1512 aaKnown RBP33.15■■■□□ 2.9
SMARCB1-202ENST00000344921 PLEKHD1A6NEE1 506 aa33.14■■■□□ 2.89
SMARCB1-202ENST00000344921 FYCO1Q9BQS8 1478 aa33.13■■■□□ 2.89
SMARCB1-202ENST00000344921 CDK11AQ9UQ88 783 aaPredicted RBP33.07■■■□□ 2.88
SMARCB1-202ENST00000344921 LRRIQ1Q96JM4 1722 aa33.06■■■□□ 2.88
SMARCB1-202ENST00000344921 GLI2P10070 1586 aa33.06■■■□□ 2.88
SMARCB1-202ENST00000344921 CCDC18Q5T9S5 1454 aa33.04■■■□□ 2.88
SMARCB1-202ENST00000344921 TSPOAP1O95153 1857 aa33.02■■■□□ 2.88
SMARCB1-202ENST00000344921 VPS8Q8N3P4 1428 aa33■■■□□ 2.87
SMARCB1-202ENST00000344921 MAP3K4Q9Y6R4 1608 aa32.94■■■□□ 2.86
SMARCB1-202ENST00000344921 CD109Q6YHK3 1445 aa32.91■■■□□ 2.86
SMARCB1-202ENST00000344921 CFAP43Q8NDM7 1665 aa32.91■■■□□ 2.86
SMARCB1-202ENST00000344921 TROQ12816 1431 aaPredicted RBP32.88■■■□□ 2.85
SMARCB1-202ENST00000344921 ABCA9Q8IUA7 1624 aa32.87■■■□□ 2.85
SMARCB1-202ENST00000344921 PPRC1Q5VV67 1664 aaKnown RBP32.82■■■□□ 2.85
SMARCB1-202ENST00000344921 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.81■■■□□ 2.843e-6■■■□□ 15.2
SMARCB1-202ENST00000344921 TEX14Q8IWB6 1497 aa32.81■■■□□ 2.84
SMARCB1-202ENST00000344921 MAGI3Q5TCQ9 1506 aa32.81■■■□□ 2.84
SMARCB1-202ENST00000344921 KIF14Q15058 1648 aa32.81■■■□□ 2.84
SMARCB1-202ENST00000344921 MTUS2Q5JR59 1369 aa32.8■■■□□ 2.84
SMARCB1-202ENST00000344921 APLP2Q06481 763 aa32.77■■■□□ 2.84
SMARCB1-202ENST00000344921 TTC37Q6PGP7 1564 aa32.77■■■□□ 2.84
SMARCB1-202ENST00000344921 TIAM1Q13009 1591 aa32.73■■■□□ 2.83
SMARCB1-202ENST00000344921 EHBP1L1Q8N3D4 1523 aa32.67■■■□□ 2.82
SMARCB1-202ENST00000344921 KDM6BO15054 1643 aa32.66■■■□□ 2.82
SMARCB1-202ENST00000344921 MYO5CQ9NQX4 1742 aa32.64■■■□□ 2.82
SMARCB1-202ENST00000344921 MAP3K1Q13233 1512 aa32.64■■■□□ 2.82
SMARCB1-202ENST00000344921 PLCH2O75038 1416 aa32.63■■■□□ 2.81
SMARCB1-202ENST00000344921 FANCAO15360 1455 aa32.6■■■□□ 2.81
SMARCB1-202ENST00000344921 LRRC9Q6ZRR7 1453 aa32.6■■■□□ 2.81
SMARCB1-202ENST00000344921 NEO1Q92859 1461 aa32.58■■■□□ 2.81
SMARCB1-202ENST00000344921 KANK4Q5T7N3 995 aaPredicted RBP32.58■■■□□ 2.81
SMARCB1-202ENST00000344921 PHLDB1Q86UU1 1377 aa32.56■■■□□ 2.8
SMARCB1-202ENST00000344921 EFCAB2Q5VUJ9 269 aa32.56■■■□□ 2.8
SMARCB1-202ENST00000344921 CFAP74Q9C0B2 1584 aa32.56■■■□□ 2.8
SMARCB1-202ENST00000344921 ARHGAP5Q13017 1502 aa32.55■■■□□ 2.8
SMARCB1-202ENST00000344921 SUPT6HQ7KZ85 1726 aaKnown RBP32.54■■■□□ 2.8
SMARCB1-202ENST00000344921 CCNB3Q8WWL7 1395 aa32.54■■■□□ 2.8
SMARCB1-202ENST00000344921 COL17A1Q9UMD9 1497 aaPredicted RBP32.53■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms