RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 NISCHQ9Y2I1 1504 aa49.84■■■■■ 5.57
SMARCB1-202ENST00000344921 CCDC180Q9P1Z9 1646 aa44.16■■■■■ 4.66
SMARCB1-202ENST00000344921 ABCC9O60706 1549 aa43.05■■■■■ 4.48
SMARCB1-202ENST00000344921 DCAF8L2P0C7V8 631 aa41.75■■■■■ 4.27
SMARCB1-202ENST00000344921 ZCCHC6Q5VYS8 1495 aaKnown RBP41.55■■■■■ 4.24
SMARCB1-202ENST00000344921 RB1CC1Q8TDY2 1594 aa41.48■■■■■ 4.23
SMARCB1-202ENST00000344921 NACADO15069 1562 aa41.47■■■■■ 4.23
SMARCB1-202ENST00000344921 MYO15BQ96JP2 1530 aa41.25■■■■■ 4.19
SMARCB1-202ENST00000344921 DCAF1Q9Y4B6 1507 aa41.19■■■■■ 4.18
SMARCB1-202ENST00000344921 UNC13AQ9UPW8 1703 aa40.53■■■■■ 4.08
SMARCB1-202ENST00000344921 SCRIBQ14160 1630 aa40.4■■■■■ 4.06
SMARCB1-202ENST00000344921 PABPN1Q86U42 306 aaKnown RBP eCLIP40.3■■■■■ 4.04
SMARCB1-202ENST00000344921 BICRAQ9NZM4 1560 aa40.16■■■■■ 4.02
SMARCB1-202ENST00000344921 SHROOM4Q9ULL8 1493 aa39.73■■■■□ 3.95
SMARCB1-202ENST00000344921 DNAJC5BQ9UF47 199 aa39.23■■■■□ 3.87
SMARCB1-202ENST00000344921 EIF4G1Q04637 1599 aaKnown RBP39.12■■■■□ 3.85
SMARCB1-202ENST00000344921 CC2D2AQ9P2K1 1620 aa38.91■■■■□ 3.82
SMARCB1-202ENST00000344921 CECR2Q9BXF3 1484 aa38.81■■■■□ 3.8
SMARCB1-202ENST00000344921 SMARCA4P51532 1647 aa38.62■■■■□ 3.77
SMARCB1-202ENST00000344921 BAZ1AQ9NRL2 1556 aaPredicted RBP38.62■■■■□ 3.77
SMARCB1-202ENST00000344921 MROH2BQ7Z745 1585 aa38.43■■■■□ 3.74
SMARCB1-202ENST00000344921 ATAD2BQ9ULI0 1458 aa38.34■■■■□ 3.73
SMARCB1-202ENST00000344921 SMARCA2P51531 1590 aa38.32■■■■□ 3.72
SMARCB1-202ENST00000344921 NCAPD3P42695 1498 aa38.25■■■■□ 3.71
SMARCB1-202ENST00000344921 PEG3Q9GZU2 1588 aa38.18■■■■□ 3.7
SMARCB1-202ENST00000344921 HMGXB3Q12766 1538 aa38.09■■■■□ 3.69
SMARCB1-202ENST00000344921 RSF1Q96T23 1441 aaPredicted RBP38.09■■■■□ 3.69
SMARCB1-202ENST00000344921 BAZ1BQ9UIG0 1483 aaKnown RBP38.09■■■■□ 3.69
SMARCB1-202ENST00000344921 WIZO95785 1651 aa38.06■■■■□ 3.68
SMARCB1-202ENST00000344921 TOP2AP11388 1531 aaKnown RBP37.63■■■■□ 3.61
SMARCB1-202ENST00000344921 SUPT5HO00267 1087 aaKnown RBP37.5■■■■□ 3.59
SMARCB1-202ENST00000344921 NESP48681 1621 aa37.31■■■■□ 3.56
SMARCB1-202ENST00000344921 LAMC3Q9Y6N6 1575 aa37.23■■■■□ 3.55
SMARCB1-202ENST00000344921 CCDC88BA6NC98 1476 aa37.22■■■■□ 3.55
SMARCB1-202ENST00000344921 CADPSQ9ULU8 1353 aa37.2■■■■□ 3.54
SMARCB1-202ENST00000344921 ERCC6Q03468 1493 aa37.11■■■■□ 3.53
SMARCB1-202ENST00000344921 CFTRP13569 1480 aa37.01■■■■□ 3.51
SMARCB1-202ENST00000344921 PDS5BQ9NTI5 1447 aa37■■■■□ 3.51
SMARCB1-202ENST00000344921 KIF21AQ7Z4S6 1674 aa36.87■■■■□ 3.49
SMARCB1-202ENST00000344921 FANCD2Q9BXW9 1451 aa36.78■■■■□ 3.48
SMARCB1-202ENST00000344921 PRDM2Q13029 1718 aa36.76■■■■□ 3.47
SMARCB1-202ENST00000344921 CEP164Q9UPV0 1460 aa36.72■■■■□ 3.47
SMARCB1-202ENST00000344921 THOC2Q8NI27 1593 aaKnown RBP36.63■■■■□ 3.45
SMARCB1-202ENST00000344921 MRC2Q9UBG0 1479 aa36.58■■■■□ 3.45
SMARCB1-202ENST00000344921 CUX2O14529 1486 aa36.53■■■■□ 3.44
SMARCB1-202ENST00000344921 WDR62O43379 1518 aa36.42■■■■□ 3.42
SMARCB1-202ENST00000344921 URB2Q14146 1524 aaKnown RBP36.37■■■■□ 3.41
SMARCB1-202ENST00000344921 ABCC8Q09428 1581 aa36.22■■■■□ 3.39
SMARCB1-202ENST00000344921 TOPBP1Q92547 1522 aa36.21■■■■□ 3.39
SMARCB1-202ENST00000344921 DNMBPQ6XZF7 1577 aa36.18■■■■□ 3.38
SMARCB1-202ENST00000344921 CUX1P39880 1505 aa36.03■■■■□ 3.36
SMARCB1-202ENST00000344921 WRNQ14191 1432 aaPredicted RBP eCLIP35.94■■■■□ 3.34
SMARCB1-202ENST00000344921 POLA1P09884 1462 aaPredicted RBP35.92■■■■□ 3.34
SMARCB1-202ENST00000344921 IFT140Q96RY7 1462 aa35.91■■■■□ 3.34
SMARCB1-202ENST00000344921 FGD5Q6ZNL6 1462 aa35.89■■■■□ 3.34
SMARCB1-202ENST00000344921 SOGA1O94964 1423 aa35.82■■■■□ 3.32
SMARCB1-202ENST00000344921 SYNJ1O43426 1573 aa35.8■■■■□ 3.32
SMARCB1-202ENST00000344921 TOP2BQ02880 1626 aa35.79■■■■□ 3.32
SMARCB1-202ENST00000344921 RAD54L2Q9Y4B4 1467 aa35.79■■■■□ 3.32
SMARCB1-202ENST00000344921 BIVM-ERCC5R4GMW8 1640 aa35.78■■■■□ 3.32
SMARCB1-202ENST00000344921 TARBP1Q13395 1621 aaKnown RBP35.76■■■■□ 3.32
SMARCB1-202ENST00000344921 ZNF608Q9ULD9 1512 aaPredicted RBP35.74■■■■□ 3.31
SMARCB1-202ENST00000344921 EIF4G3O43432 1585 aaKnown RBP35.6■■■■□ 3.29
SMARCB1-202ENST00000344921 AQRO60306 1485 aaKnown RBP eCLIP35.6■■■■□ 3.29
SMARCB1-202ENST00000344921 TDRD9Q8NDG6 1382 aaKnown RBP35.6■■■■□ 3.29
SMARCB1-202ENST00000344921 WDR97A6NE52 1622 aa35.53■■■■□ 3.28
SMARCB1-202ENST00000344921 ABCA10Q8WWZ4 1543 aa35.53■■■■□ 3.28
SMARCB1-202ENST00000344921 GAPVD1Q14C86 1478 aa35.4■■■■□ 3.26
SMARCB1-202ENST00000344921 TRIM41Q8WV44 630 aa35.38■■■■□ 3.25
SMARCB1-202ENST00000344921 ABCA5Q8WWZ7 1642 aa35.35■■■■□ 3.25
SMARCB1-202ENST00000344921 GRIN2BQ13224 1484 aa35.34■■■■□ 3.25
SMARCB1-202ENST00000344921 PBRM1Q86U86 1689 aa35.29■■■■□ 3.24
SMARCB1-202ENST00000344921 SNAPC4Q5SXM2 1469 aa35.26■■■■□ 3.24
SMARCB1-202ENST00000344921 FBLN2P98095 1184 aa35.24■■■■□ 3.23
SMARCB1-202ENST00000344921 MAGI1Q96QZ7 1491 aaPredicted RBP35.2■■■■□ 3.23
SMARCB1-202ENST00000344921 KIF27Q86VH2 1401 aa35.18■■■■□ 3.22
SMARCB1-202ENST00000344921 OSCARQ8IYS5 282 aa35.15■■■■□ 3.22
SMARCB1-202ENST00000344921 CHMP7Q8WUX9 453 aaPredicted RBP35.13■■■■□ 3.21
SMARCB1-202ENST00000344921 CHD1O14646 1710 aa35.12■■■■□ 3.21
SMARCB1-202ENST00000344921 DNAJC5Q9H3Z4 198 aa35.12■■■■□ 3.21
SMARCB1-202ENST00000344921 ERICH3Q5RHP9 1530 aa35.11■■■■□ 3.21
SMARCB1-202ENST00000344921 CHIC1Q5VXU3 224 aa35.07■■■■□ 3.2
SMARCB1-202ENST00000344921 SYNJ2O15056 1496 aa35.07■■■■□ 3.2
SMARCB1-202ENST00000344921 ADAMTS12P58397 1594 aa35■■■■□ 3.19
SMARCB1-202ENST00000344921 FHAD1B1AJZ9 1412 aa34.98■■■■□ 3.19
SMARCB1-202ENST00000344921 IGF1RP08069 1367 aa34.97■■■■□ 3.19
SMARCB1-202ENST00000344921 RUSC2Q8N2Y8 1516 aa34.93■■■■□ 3.18
SMARCB1-202ENST00000344921 GRIN2AQ12879 1464 aa34.88■■■■□ 3.17
SMARCB1-202ENST00000344921 CUL7Q14999 1698 aa34.86■■■■□ 3.17
SMARCB1-202ENST00000344921 CARMIL1Q5VZK9 1371 aa34.8■■■■□ 3.16
SMARCB1-202ENST00000344921 CEP170Q5SW79 1584 aa34.69■■■■□ 3.14
SMARCB1-202ENST00000344921 CLASP1Q7Z460 1538 aa34.68■■■■□ 3.14
SMARCB1-202ENST00000344921 FAM9AQ8IZU1 332 aaPredicted RBP34.68■■■■□ 3.14
SMARCB1-202ENST00000344921 NUP160Q12769 1436 aa34.67■■■■□ 3.14
SMARCB1-202ENST00000344921 EEA1Q15075 1411 aa34.66■■■■□ 3.14
SMARCB1-202ENST00000344921 CSRNP3Q8WYN3 585 aa34.64■■■■□ 3.14
SMARCB1-202ENST00000344921 RAPGEF2Q9Y4G8 1499 aa34.62■■■■□ 3.13
SMARCB1-202ENST00000344921 ARHGEF11O15085 1522 aa34.52■■■■□ 3.12
SMARCB1-202ENST00000344921 PRXQ9BXM0 1461 aa34.51■■■■□ 3.12
SMARCB1-202ENST00000344921 RIMBP3CA6NJZ7 1639 aa34.49■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms