RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 FHAD1B1AJZ9 1412 aa26.13■■□□□ 1.77
DDX28-201ENST00000332395 EFCAB5A4FU69 1503 aa26.11■■□□□ 1.77
DDX28-201ENST00000332395 TARBP1Q13395 1621 aaKnown RBP26.1■■□□□ 1.77
DDX28-201ENST00000332395 PCF11O94913 1555 aaKnown RBP26.06■■□□□ 1.76
DDX28-201ENST00000332395 P3H3Q8IVL6 736 aa26.05■■□□□ 1.76
DDX28-201ENST00000332395 FHOD3Q2V2M9 1422 aa26.04■■□□□ 1.76
DDX28-201ENST00000332395 MRC2Q9UBG0 1479 aa26.03■■□□□ 1.76
DDX28-201ENST00000332395 CCNB3Q8WWL7 1395 aa26.02■■□□□ 1.76
DDX28-201ENST00000332395 CFAP43Q8NDM7 1665 aa26.01■■□□□ 1.76
DDX28-201ENST00000332395 LRRC9Q6ZRR7 1453 aa26.01■■□□□ 1.75
DDX28-201ENST00000332395 FYCO1Q9BQS8 1478 aa25.97■■□□□ 1.75
DDX28-201ENST00000332395 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.75
DDX28-201ENST00000332395 CASKIN1Q8WXD9 1431 aa25.94■■□□□ 1.74
DDX28-201ENST00000332395 PELP1Q8IZL8 1130 aaKnown RBP25.94■■□□□ 1.74
DDX28-201ENST00000332395 PBRM1Q86U86 1689 aa25.94■■□□□ 1.74
DDX28-201ENST00000332395 SAMD9Q5K651 1589 aa25.92■■□□□ 1.74
DDX28-201ENST00000332395 FMN1Q68DA7 1419 aa25.91■■□□□ 1.74
DDX28-201ENST00000332395 ATP1B4Q9UN42 357 aaPredicted RBP25.88■■□□□ 1.73
DDX28-201ENST00000332395 WDR62O43379 1518 aa25.85■■□□□ 1.73
DDX28-201ENST00000332395 PHLDB1Q86UU1 1377 aa25.85■■□□□ 1.73
DDX28-201ENST00000332395 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
DDX28-201ENST00000332395 DHX57Q6P158 1386 aaKnown RBP25.85■■□□□ 1.73
DDX28-201ENST00000332395 ADAMTS12P58397 1594 aa25.83■■□□□ 1.73
DDX28-201ENST00000332395 CLSPNQ9HAW4 1339 aa25.82■■□□□ 1.72
DDX28-201ENST00000332395 IFT140Q96RY7 1462 aa25.81■■□□□ 1.72
DDX28-201ENST00000332395 GRIN2BQ13224 1484 aa25.8■■□□□ 1.72
DDX28-201ENST00000332395 ITGAEP38570 1179 aa25.79■■□□□ 1.72
DDX28-201ENST00000332395 DIEXFQ68CQ4 756 aaKnown RBP25.75■■□□□ 1.71
DDX28-201ENST00000332395 ZNF608Q9ULD9 1512 aaPredicted RBP25.74■■□□□ 1.71
DDX28-201ENST00000332395 ZNF316A6NFI3 1004 aaPredicted RBP25.74■■□□□ 1.71
DDX28-201ENST00000332395 IQGAP2Q13576 1575 aa25.72■■□□□ 1.71
DDX28-201ENST00000332395 LRRIQ1Q96JM4 1722 aa25.71■■□□□ 1.71
DDX28-201ENST00000332395 THOC2Q8NI27 1593 aaKnown RBP25.71■■□□□ 1.71
DDX28-201ENST00000332395 ERCC6Q03468 1493 aa25.69■■□□□ 1.7
DDX28-201ENST00000332395 SCAF1Q9H7N4 1312 aaKnown RBP25.68■■□□□ 1.7
DDX28-201ENST00000332395 FAM50AQ14320 339 aaKnown RBP25.68■■□□□ 1.7
DDX28-201ENST00000332395 RAB3GAP2Q9H2M9 1393 aa25.67■■□□□ 1.7
DDX28-201ENST00000332395 MTUS2Q5JR59 1369 aa25.65■■□□□ 1.7
DDX28-201ENST00000332395 EIF4G3O43432 1585 aaKnown RBP25.63■■□□□ 1.69
DDX28-201ENST00000332395 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.63■■□□□ 1.69
DDX28-201ENST00000332395 SETD5Q9C0A6 1442 aa25.62■■□□□ 1.69
DDX28-201ENST00000332395 FGD6Q6ZV73 1430 aa25.59■■□□□ 1.69
DDX28-201ENST00000332395 UGGT2Q9NYU1 1516 aa25.57■■□□□ 1.68
DDX28-201ENST00000332395 EHBP1L1Q8N3D4 1523 aa25.57■■□□□ 1.68
DDX28-201ENST00000332395 CCDC18Q5T9S5 1454 aa25.56■■□□□ 1.68
DDX28-201ENST00000332395 HECW1Q76N89 1606 aa25.55■■□□□ 1.68
DDX28-201ENST00000332395 NCOA2Q15596 1464 aa25.54■■□□□ 1.68
DDX28-201ENST00000332395 SUPT6HQ7KZ85 1726 aaKnown RBP25.54■■□□□ 1.68
DDX28-201ENST00000332395 KIAA0586Q9BVV6 1533 aa25.52■■□□□ 1.68
DDX28-201ENST00000332395 GRIN2AQ12879 1464 aa25.52■■□□□ 1.68
DDX28-201ENST00000332395 MAPKBP1O60336 1514 aa25.51■■□□□ 1.67
DDX28-201ENST00000332395 MYOM3Q5VTT5 1437 aa25.49■■□□□ 1.67
DDX28-201ENST00000332395 MAGI3Q5TCQ9 1506 aa25.49■■□□□ 1.67
DDX28-201ENST00000332395 MAGI1Q96QZ7 1491 aaPredicted RBP25.48■■□□□ 1.67
DDX28-201ENST00000332395 EPRSP07814 1512 aaKnown RBP25.47■■□□□ 1.67
DDX28-201ENST00000332395 ARHGEF11O15085 1522 aa25.46■■□□□ 1.67
DDX28-201ENST00000332395 KIAA0556O60303 1618 aa25.45■■□□□ 1.67
DDX28-201ENST00000332395 DISP1Q96F81 1524 aa25.44■■□□□ 1.66
DDX28-201ENST00000332395 CDK13Q14004 1512 aaKnown RBP25.4■■□□□ 1.66
DDX28-201ENST00000332395 SYNJ2O15056 1496 aa25.4■■□□□ 1.66
DDX28-201ENST00000332395 PTPN23Q9H3S7 1636 aa25.38■■□□□ 1.65
DDX28-201ENST00000332395 PTPRKQ15262 1439 aa25.38■■□□□ 1.65
DDX28-201ENST00000332395 CEP170Q5SW79 1584 aa25.36■■□□□ 1.65
DDX28-201ENST00000332395 CHMP7Q8WUX9 453 aaPredicted RBP25.36■■□□□ 1.65
DDX28-201ENST00000332395 HFM1A2PYH4 1435 aa25.34■■□□□ 1.65
DDX28-201ENST00000332395 TCOF1Q13428 1488 aaKnown RBP25.31■■□□□ 1.64
DDX28-201ENST00000332395 RAPGEF6Q8TEU7 1601 aa25.3■■□□□ 1.64
DDX28-201ENST00000332395 ARID3CA6NKF2 412 aa25.29■■□□□ 1.64
DDX28-201ENST00000332395 NUP153P49790 1475 aaKnown RBP25.29■■□□□ 1.64
DDX28-201ENST00000332395 NUP160Q12769 1436 aa25.27■■□□□ 1.64
DDX28-201ENST00000332395 FBLN2P98095 1184 aa25.27■■□□□ 1.64
DDX28-201ENST00000332395 NAIPQ13075 1403 aa25.26■■□□□ 1.63
DDX28-201ENST00000332395 MIA2Q96PC5 1412 aa25.24■■□□□ 1.63
DDX28-201ENST00000332395 ACIN1Q9UKV3 1341 aaKnown RBP25.24■■□□□ 1.63
DDX28-201ENST00000332395 MIER1Q8N108 512 aa25.24■■□□□ 1.63
DDX28-201ENST00000332395 SIN3AQ96ST3 1273 aa25.23■■□□□ 1.63
DDX28-201ENST00000332395 UACAQ9BZF9 1416 aa25.21■■□□□ 1.63
DDX28-201ENST00000332395 NEUROD1Q13562 356 aa25.19■■□□□ 1.62
DDX28-201ENST00000332395 CARMIL2Q6F5E8 1435 aa25.18■■□□□ 1.62
DDX28-201ENST00000332395 CENPBP07199 599 aaPredicted RBP25.17■■□□□ 1.62
DDX28-201ENST00000332395 TIMELESSQ9UNS1 1208 aa25.17■■□□□ 1.62
DDX28-201ENST00000332395 JPH4Q96JJ6 628 aa25.16■■□□□ 1.62
DDX28-201ENST00000332395 GCC2Q8IWJ2 1684 aa25.15■■□□□ 1.62
DDX28-201ENST00000332395 PLB1Q6P1J6 1458 aa25.14■■□□□ 1.62
DDX28-201ENST00000332395 CDK11AQ9UQ88 783 aaPredicted RBP25.14■■□□□ 1.62
DDX28-201ENST00000332395 AKNAQ7Z591 1439 aa25.13■■□□□ 1.61
DDX28-201ENST00000332395 CHIC2Q9UKJ5 165 aa25.11■■□□□ 1.61
DDX28-201ENST00000332395 RRP7BPQ9NSQ0 103 aa25.1■■□□□ 1.61
DDX28-201ENST00000332395 TROQ12816 1431 aaPredicted RBP25.08■■□□□ 1.61
DDX28-201ENST00000332395 PRG4Q92954 1404 aaPredicted RBP25.06■■□□□ 1.6
DDX28-201ENST00000332395 DNMT1P26358 1616 aaKnown RBP25.03■■□□□ 1.6
DDX28-201ENST00000332395 DAPK1P53355 1430 aa25.03■■□□□ 1.6
DDX28-201ENST00000332395 KDM6BO15054 1643 aa25.02■■□□□ 1.6
DDX28-201ENST00000332395 ADCY10Q96PN6 1610 aa25.02■■□□□ 1.6
DDX28-201ENST00000332395 PPP1R15AO75807 674 aaPredicted RBP25.01■■□□□ 1.59
DDX28-201ENST00000332395 ABCA8O94911 1581 aa25.01■■□□□ 1.59
DDX28-201ENST00000332395 YTHDC1Q96MU7 727 aaKnown RBP25■■□□□ 1.59
DDX28-201ENST00000332395 TONSLQ96HA7 1378 aa24.99■■□□□ 1.59
DDX28-201ENST00000332395 ITSN2Q9NZM3 1697 aa24.99■■□□□ 1.59
DDX28-201ENST00000332395 ABCC5O15440 1437 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms