RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 NISCHQ9Y2I1 1504 aa37.58■■■■□ 3.61
DDX28-201ENST00000332395 CCDC180Q9P1Z9 1646 aa32.33■■■□□ 2.77
DDX28-201ENST00000332395 ZCCHC6Q5VYS8 1495 aaKnown RBP31.72■■■□□ 2.67
DDX28-201ENST00000332395 SHROOM4Q9ULL8 1493 aa31.38■■■□□ 2.61
DDX28-201ENST00000332395 DCAF8L2P0C7V8 631 aa30.98■■■□□ 2.55
DDX28-201ENST00000332395 DCAF1Q9Y4B6 1507 aa30.97■■■□□ 2.55
DDX28-201ENST00000332395 SUPT5HO00267 1087 aaKnown RBP30.54■■■□□ 2.48
DDX28-201ENST00000332395 MYO15BQ96JP2 1530 aa30.3■■■□□ 2.44
DDX28-201ENST00000332395 ABCC9O60706 1549 aa30.1■■■□□ 2.41
DDX28-201ENST00000332395 SCRIBQ14160 1630 aa30■■■□□ 2.39
DDX28-201ENST00000332395 NACADO15069 1562 aa29.95■■■□□ 2.39
DDX28-201ENST00000332395 CHIC1Q5VXU3 224 aa29.55■■■□□ 2.32
DDX28-201ENST00000332395 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
DDX28-201ENST00000332395 RSF1Q96T23 1441 aaPredicted RBP29.48■■■□□ 2.31
DDX28-201ENST00000332395 CECR2Q9BXF3 1484 aa29.23■■■□□ 2.27
DDX28-201ENST00000332395 MROH2BQ7Z745 1585 aa29.12■■■□□ 2.25
DDX28-201ENST00000332395 UNC13AQ9UPW8 1703 aa29.06■■■□□ 2.24
DDX28-201ENST00000332395 WIZO95785 1651 aa28.94■■■□□ 2.22
DDX28-201ENST00000332395 BAZ1AQ9NRL2 1556 aaPredicted RBP28.93■■■□□ 2.22
DDX28-201ENST00000332395 SMARCA4P51532 1647 aa28.74■■■□□ 2.19
DDX28-201ENST00000332395 BICRAQ9NZM4 1560 aa28.71■■■□□ 2.19
DDX28-201ENST00000332395 PABPN1Q86U42 306 aaKnown RBP eCLIP28.58■■■□□ 2.17
DDX28-201ENST00000332395 TRIM41Q8WV44 630 aa28.58■■■□□ 2.17
DDX28-201ENST00000332395 TOP2AP11388 1531 aaKnown RBP28.57■■■□□ 2.16
DDX28-201ENST00000332395 LOC105371045A0A1W2PR82 267 aa28.54■■■□□ 2.16
DDX28-201ENST00000332395 EIF4G1Q04637 1599 aaKnown RBP28.43■■■□□ 2.14
DDX28-201ENST00000332395 SMARCA2P51531 1590 aa28.37■■■□□ 2.13
DDX28-201ENST00000332395 CCDC88BA6NC98 1476 aa28.35■■■□□ 2.13
DDX28-201ENST00000332395 PEG3Q9GZU2 1588 aa28.29■■■□□ 2.12
DDX28-201ENST00000332395 FAM9AQ8IZU1 332 aaPredicted RBP28.19■■■□□ 2.1
DDX28-201ENST00000332395 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
DDX28-201ENST00000332395 ABCC8Q09428 1581 aa28.06■■■□□ 2.08
DDX28-201ENST00000332395 PCGF6Q9BYE7 350 aa28.02■■■□□ 2.08
DDX28-201ENST00000332395 BAZ1BQ9UIG0 1483 aaKnown RBP27.98■■■□□ 2.07
DDX28-201ENST00000332395 EHMT2Q96KQ7 1210 aa27.85■■■□□ 2.05
DDX28-201ENST00000332395 HRCP23327 699 aa27.76■■■□□ 2.03
DDX28-201ENST00000332395 TRIM26Q12899 539 aaPredicted RBP27.73■■■□□ 2.03
DDX28-201ENST00000332395 WRNQ14191 1432 aaPredicted RBP eCLIP27.72■■■□□ 2.03
DDX28-201ENST00000332395 HMGXB3Q12766 1538 aa27.68■■■□□ 2.02
DDX28-201ENST00000332395 SOGA1O94964 1423 aa27.68■■■□□ 2.02
DDX28-201ENST00000332395 NCAPD3P42695 1498 aa27.67■■■□□ 2.02
DDX28-201ENST00000332395 EEA1Q15075 1411 aa27.63■■■□□ 2.01
DDX28-201ENST00000332395 SYNJ1O43426 1573 aa27.6■■■□□ 2.01
DDX28-201ENST00000332395 RUSC2Q8N2Y8 1516 aa27.55■■■□□ 2
DDX28-201ENST00000332395 CSRNP3Q8WYN3 585 aa27.5■■□□□ 1.99
DDX28-201ENST00000332395 TNIKQ9UKE5 1360 aa27.4■■□□□ 1.98
DDX28-201ENST00000332395 TOP2BQ02880 1626 aa27.38■■□□□ 1.97
DDX28-201ENST00000332395 CEP162Q5TB80 1403 aa27.36■■□□□ 1.97
DDX28-201ENST00000332395 GOLGA3Q08378 1498 aa27.35■■□□□ 1.97
DDX28-201ENST00000332395 BIVM-ERCC5R4GMW8 1640 aa27.32■■□□□ 1.96
DDX28-201ENST00000332395 CFTRP13569 1480 aa27.29■■□□□ 1.96
DDX28-201ENST00000332395 UBTFP17480 764 aaKnown RBP27.27■■□□□ 1.96
DDX28-201ENST00000332395 KIF21BO75037 1637 aa27.27■■□□□ 1.96
DDX28-201ENST00000332395 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
DDX28-201ENST00000332395 CC2D2AQ9P2K1 1620 aa27.2■■□□□ 1.95
DDX28-201ENST00000332395 PPARGC1BQ86YN6 1023 aaKnown RBP27.19■■□□□ 1.94
DDX28-201ENST00000332395 CUX1P39880 1505 aa27.17■■□□□ 1.94
DDX28-201ENST00000332395 PRDM2Q13029 1718 aa27.16■■□□□ 1.94
DDX28-201ENST00000332395 RAPGEF2Q9Y4G8 1499 aa27.06■■□□□ 1.92
DDX28-201ENST00000332395 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
DDX28-201ENST00000332395 CLIP1P30622 1438 aa26.97■■□□□ 1.91
DDX28-201ENST00000332395 ZEB1P37275 1124 aaPredicted RBP26.95■■□□□ 1.9
DDX28-201ENST00000332395 ERICH3Q5RHP9 1530 aa26.94■■□□□ 1.9
DDX28-201ENST00000332395 PRXQ9BXM0 1461 aa26.94■■□□□ 1.9
DDX28-201ENST00000332395 KIF27Q86VH2 1401 aa26.93■■□□□ 1.9
DDX28-201ENST00000332395 TTBK1Q5TCY1 1321 aaPredicted RBP26.85■■□□□ 1.89
DDX28-201ENST00000332395 VPS8Q8N3P4 1428 aa26.82■■□□□ 1.88
DDX28-201ENST00000332395 FANCD2Q9BXW9 1451 aa26.79■■□□□ 1.88
DDX28-201ENST00000332395 FGD5Q6ZNL6 1462 aa26.75■■□□□ 1.87
DDX28-201ENST00000332395 CUX2O14529 1486 aa26.73■■□□□ 1.87
DDX28-201ENST00000332395 RANGAP1P46060 587 aaPredicted RBP26.72■■□□□ 1.87
DDX28-201ENST00000332395 NESP48681 1621 aa26.67■■□□□ 1.86
DDX28-201ENST00000332395 DNMBPQ6XZF7 1577 aa26.64■■□□□ 1.86
DDX28-201ENST00000332395 IGF1RP08069 1367 aa26.64■■□□□ 1.85
DDX28-201ENST00000332395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.62■■□□□ 1.85
DDX28-201ENST00000332395 ARAP1Q96P48 1450 aa26.61■■□□□ 1.85
DDX28-201ENST00000332395 LAMC3Q9Y6N6 1575 aa26.6■■□□□ 1.85
DDX28-201ENST00000332395 APLP2Q06481 763 aa26.6■■□□□ 1.85
DDX28-201ENST00000332395 TOPBP1Q92547 1522 aa26.57■■□□□ 1.84
DDX28-201ENST00000332395 CCER1Q8TC90 406 aaPredicted RBP26.56■■□□□ 1.84
DDX28-201ENST00000332395 POLA1P09884 1462 aaPredicted RBP26.52■■□□□ 1.84
DDX28-201ENST00000332395 CARMIL1Q5VZK9 1371 aa26.52■■□□□ 1.84
DDX28-201ENST00000332395 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
DDX28-201ENST00000332395 RAD54L2Q9Y4B4 1467 aa26.48■■□□□ 1.83
DDX28-201ENST00000332395 ARHGAP35Q9NRY4 1499 aa26.48■■□□□ 1.83
DDX28-201ENST00000332395 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
DDX28-201ENST00000332395 URB2Q14146 1524 aaKnown RBP26.42■■□□□ 1.82
DDX28-201ENST00000332395 PDS5BQ9NTI5 1447 aa26.4■■□□□ 1.82
DDX28-201ENST00000332395 WDR97A6NE52 1622 aa26.33■■□□□ 1.81
DDX28-201ENST00000332395 CUL7Q14999 1698 aa26.31■■□□□ 1.8
DDX28-201ENST00000332395 HNRNPUL2Q1KMD3 747 aaKnown RBP26.31■■□□□ 1.8
DDX28-201ENST00000332395 KIF21AQ7Z4S6 1674 aa26.31■■□□□ 1.8
DDX28-201ENST00000332395 KANK4Q5T7N3 995 aaPredicted RBP26.29■■□□□ 1.8
DDX28-201ENST00000332395 ABCA5Q8WWZ7 1642 aa26.22■■□□□ 1.79
DDX28-201ENST00000332395 TDRD9Q8NDG6 1382 aaKnown RBP26.16■■□□□ 1.78
DDX28-201ENST00000332395 CTTNBP2Q8WZ74 1663 aa26.16■■□□□ 1.78
DDX28-201ENST00000332395 MAP3K1Q13233 1512 aa26.15■■□□□ 1.78
DDX28-201ENST00000332395 GAPVD1Q14C86 1478 aa26.15■■□□□ 1.78
DDX28-201ENST00000332395 RRBP1Q9P2E9 1410 aaKnown RBP26.14■■□□□ 1.77
DDX28-201ENST00000332395 TIAM1Q13009 1591 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms