RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 CHD1O14646 1710 aa22.19■■□□□ 1.14
VRK3-201ENST00000316763 CEP162Q5TB80 1403 aa22.18■■□□□ 1.14
VRK3-201ENST00000316763 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
VRK3-201ENST00000316763 CLIP1P30622 1438 aa22.04■■□□□ 1.12
VRK3-201ENST00000316763 CEP170Q5SW79 1584 aa22.04■■□□□ 1.12
VRK3-201ENST00000316763 ZEB1P37275 1124 aaPredicted RBP22.03■■□□□ 1.12
VRK3-201ENST00000316763 OSCARQ8IYS5 282 aa22.02■■□□□ 1.12
VRK3-201ENST00000316763 NUP160Q12769 1436 aa22.02■■□□□ 1.12
VRK3-201ENST00000316763 PPARGC1BQ86YN6 1023 aaKnown RBP22.02■■□□□ 1.11
VRK3-201ENST00000316763 CTTNBP2Q8WZ74 1663 aa21.96■■□□□ 1.11
VRK3-201ENST00000316763 KIAA0586Q9BVV6 1533 aa21.94■■□□□ 1.1
VRK3-201ENST00000316763 CLASP1Q7Z460 1538 aa21.92■■□□□ 1.1
VRK3-201ENST00000316763 RANGAP1P46060 587 aaPredicted RBP21.89■■□□□ 1.09
VRK3-201ENST00000316763 IQGAP2Q13576 1575 aa21.89■■□□□ 1.09
VRK3-201ENST00000316763 ARHGAP35Q9NRY4 1499 aa21.87■■□□□ 1.09
VRK3-201ENST00000316763 JPH4Q96JJ6 628 aa21.85■■□□□ 1.09
VRK3-201ENST00000316763 ARAP1Q96P48 1450 aa21.85■■□□□ 1.09
VRK3-201ENST00000316763 VPS8Q8N3P4 1428 aa21.84■■□□□ 1.09
VRK3-201ENST00000316763 SHROOM2Q13796 1616 aa21.81■■□□□ 1.08
VRK3-201ENST00000316763 UGGT2Q9NYU1 1516 aa21.78■■□□□ 1.08
VRK3-201ENST00000316763 EFCAB5A4FU69 1503 aa21.77■■□□□ 1.08
VRK3-201ENST00000316763 PRG4Q92954 1404 aaPredicted RBP21.75■■□□□ 1.07
VRK3-201ENST00000316763 DISP1Q96F81 1524 aa21.71■■□□□ 1.07
VRK3-201ENST00000316763 ERCC6L2Q5T890 1561 aa21.71■■□□□ 1.07
VRK3-201ENST00000316763 SAMD9Q5K651 1589 aa21.7■■□□□ 1.07
VRK3-201ENST00000316763 P3H3Q8IVL6 736 aa21.69■■□□□ 1.06
VRK3-201ENST00000316763 CARMIL2Q6F5E8 1435 aa21.68■■□□□ 1.06
VRK3-201ENST00000316763 KIAA0556O60303 1618 aa21.67■■□□□ 1.06
VRK3-201ENST00000316763 FHOD3Q2V2M9 1422 aa21.65■■□□□ 1.06
VRK3-201ENST00000316763 ARHGEF11O15085 1522 aa21.64■■□□□ 1.05
VRK3-201ENST00000316763 DNAJC5Q9H3Z4 198 aa21.61■■□□□ 1.05
VRK3-201ENST00000316763 RIMBP3CA6NJZ7 1639 aa21.6■■□□□ 1.05
VRK3-201ENST00000316763 RIMBP3BA6NNM3 1639 aa21.6■■□□□ 1.05
VRK3-201ENST00000316763 RIMBP3Q9UFD9 1639 aa21.6■■□□□ 1.05
VRK3-201ENST00000316763 TTBK1Q5TCY1 1321 aaPredicted RBP21.59■■□□□ 1.05
VRK3-201ENST00000316763 FMN1Q68DA7 1419 aa21.58■■□□□ 1.05
VRK3-201ENST00000316763 APLP2Q06481 763 aa21.56■■□□□ 1.04
VRK3-201ENST00000316763 PTPRGP23470 1445 aa21.55■■□□□ 1.04
VRK3-201ENST00000316763 CASKIN1Q8WXD9 1431 aa21.54■■□□□ 1.04
VRK3-201ENST00000316763 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.04
VRK3-201ENST00000316763 PCF11O94913 1555 aaKnown RBP21.52■■□□□ 1.04
VRK3-201ENST00000316763 FYCO1Q9BQS8 1478 aa21.52■■□□□ 1.03
VRK3-201ENST00000316763 MAP3K1Q13233 1512 aa21.51■■□□□ 1.03
VRK3-201ENST00000316763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.49■■□□□ 1.03
VRK3-201ENST00000316763 CYB5RLQ6IPT4 315 aa21.47■■□□□ 1.03
VRK3-201ENST00000316763 PLB1Q6P1J6 1458 aa21.44■■□□□ 1.02
VRK3-201ENST00000316763 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
VRK3-201ENST00000316763 TIAM1Q13009 1591 aa21.43■■□□□ 1.02
VRK3-201ENST00000316763 ABCA8O94911 1581 aa21.41■■□□□ 1.02
VRK3-201ENST00000316763 UACAQ9BZF9 1416 aa21.41■■□□□ 1.02
VRK3-201ENST00000316763 RAPGEF6Q8TEU7 1601 aa21.4■■□□□ 1.02
VRK3-201ENST00000316763 CFAP43Q8NDM7 1665 aa21.38■■□□□ 1.01
VRK3-201ENST00000316763 ATP1B4Q9UN42 357 aaPredicted RBP21.37■■□□□ 1.01
VRK3-201ENST00000316763 LRRC9Q6ZRR7 1453 aa21.36■■□□□ 1.01
VRK3-201ENST00000316763 ADCY10Q96PN6 1610 aa21.35■■□□□ 1.01
VRK3-201ENST00000316763 ABCC2Q92887 1545 aa21.35■■□□□ 1.01
VRK3-201ENST00000316763 UHRF1BP1LA0JNW5 1464 aa21.34■■□□□ 1.01
VRK3-201ENST00000316763 HECW1Q76N89 1606 aa21.33■■□□□ 1.01
VRK3-201ENST00000316763 NUP153P49790 1475 aaKnown RBP21.32■■□□□ 1
VRK3-201ENST00000316763 ARID3CA6NKF2 412 aa21.31■■□□□ 1
VRK3-201ENST00000316763 CCDC18Q5T9S5 1454 aa21.31■■□□□ 1
VRK3-201ENST00000316763 LRRIQ1Q96JM4 1722 aa21.31■■□□□ 1
VRK3-201ENST00000316763 EPRSP07814 1512 aaKnown RBP21.29■■□□□ 1
VRK3-201ENST00000316763 ATP10BO94823 1461 aa21.26■□□□□ 0.99
VRK3-201ENST00000316763 KDM5BQ9UGL1 1544 aa21.25■□□□□ 0.99
VRK3-201ENST00000316763 CDK13Q14004 1512 aaKnown RBP21.24■□□□□ 0.99
VRK3-201ENST00000316763 ZCCHC11Q5TAX3 1644 aaKnown RBP21.23■□□□□ 0.99
VRK3-201ENST00000316763 NPM1P06748 294 aaKnown RBP eCLIP21.23■□□□□ 0.99
VRK3-201ENST00000316763 HNRNPUL2Q1KMD3 747 aaKnown RBP21.23■□□□□ 0.99
VRK3-201ENST00000316763 MTUS2Q5JR59 1369 aa21.21■□□□□ 0.99
VRK3-201ENST00000316763 RRBP1Q9P2E9 1410 aaKnown RBP21.19■□□□□ 0.98
VRK3-201ENST00000316763 MAGI3Q5TCQ9 1506 aa21.18■□□□□ 0.98
VRK3-201ENST00000316763 EHBP1L1Q8N3D4 1523 aa21.18■□□□□ 0.98
VRK3-201ENST00000316763 PHLDB1Q86UU1 1377 aa21.16■□□□□ 0.98
VRK3-201ENST00000316763 PLEKHD1A6NEE1 506 aa21.12■□□□□ 0.97
VRK3-201ENST00000316763 CDK11AQ9UQ88 783 aaPredicted RBP21.12■□□□□ 0.97
VRK3-201ENST00000316763 CCNB3Q8WWL7 1395 aa21.11■□□□□ 0.97
VRK3-201ENST00000316763 ASXL2Q76L83 1435 aa21.1■□□□□ 0.97
VRK3-201ENST00000316763 NCOA2Q15596 1464 aa21.1■□□□□ 0.97
VRK3-201ENST00000316763 MAPKBP1O60336 1514 aa21.09■□□□□ 0.97
VRK3-201ENST00000316763 SUPT6HQ7KZ85 1726 aaKnown RBP21.09■□□□□ 0.97
VRK3-201ENST00000316763 WDR7Q9Y4E6 1490 aa21.06■□□□□ 0.96
VRK3-201ENST00000316763 TROQ12816 1431 aaPredicted RBP21.05■□□□□ 0.96
VRK3-201ENST00000316763 KCNH8Q96L42 1107 aa21.05■□□□□ 0.96
VRK3-201ENST00000316763 MYOM3Q5VTT5 1437 aa21.03■□□□□ 0.96
VRK3-201ENST00000316763 FGD6Q6ZV73 1430 aa21.01■□□□□ 0.95
VRK3-201ENST00000316763 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.01■□□□□ 0.95
VRK3-201ENST00000316763 KIF14Q15058 1648 aa20.99■□□□□ 0.95
VRK3-201ENST00000316763 DIEXFQ68CQ4 756 aaKnown RBP20.96■□□□□ 0.95
VRK3-201ENST00000316763 ABCC10Q5T3U5 1492 aa20.95■□□□□ 0.94
VRK3-201ENST00000316763 DIP2BQ9P265 1576 aa20.93■□□□□ 0.94
VRK3-201ENST00000316763 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.93■□□□□ 0.94
VRK3-201ENST00000316763 MIA2Q96PC5 1412 aa20.93■□□□□ 0.94
VRK3-201ENST00000316763 ZNF316A6NFI3 1004 aaPredicted RBP20.92■□□□□ 0.94
VRK3-201ENST00000316763 FAM69CQ0P6D2 419 aa20.92■□□□□ 0.94
VRK3-201ENST00000316763 FAM50AQ14320 339 aaKnown RBP20.92■□□□□ 0.94
VRK3-201ENST00000316763 KIF13AQ9H1H9 1805 aa20.92■□□□□ 0.94
VRK3-201ENST00000316763 CLSPNQ9HAW4 1339 aa20.91■□□□□ 0.94
VRK3-201ENST00000316763 TTC37Q6PGP7 1564 aa20.91■□□□□ 0.94
VRK3-201ENST00000316763 TCOF1Q13428 1488 aaKnown RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms