RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 NISCHQ9Y2I1 1504 aa31.87■■■□□ 2.69
VRK3-201ENST00000316763 CCDC180Q9P1Z9 1646 aa28.09■■■□□ 2.09
VRK3-201ENST00000316763 ABCC9O60706 1549 aa27.08■■□□□ 1.93
VRK3-201ENST00000316763 ZCCHC6Q5VYS8 1495 aaKnown RBP26.65■■□□□ 1.86
VRK3-201ENST00000316763 DCAF8L2P0C7V8 631 aa26.51■■□□□ 1.83
VRK3-201ENST00000316763 DCAF1Q9Y4B6 1507 aa26.35■■□□□ 1.81
VRK3-201ENST00000316763 NACADO15069 1562 aa26.3■■□□□ 1.8
VRK3-201ENST00000316763 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
VRK3-201ENST00000316763 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
VRK3-201ENST00000316763 SCRIBQ14160 1630 aa25.72■■□□□ 1.71
VRK3-201ENST00000316763 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
VRK3-201ENST00000316763 UNC13AQ9UPW8 1703 aa25.7■■□□□ 1.7
VRK3-201ENST00000316763 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
VRK3-201ENST00000316763 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.66
VRK3-201ENST00000316763 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
VRK3-201ENST00000316763 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
VRK3-201ENST00000316763 SUPT5HO00267 1087 aaKnown RBP24.7■■□□□ 1.54
VRK3-201ENST00000316763 BAZ1AQ9NRL2 1556 aaPredicted RBP24.65■■□□□ 1.54
VRK3-201ENST00000316763 SMARCA4P51532 1647 aa24.63■■□□□ 1.53
VRK3-201ENST00000316763 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
VRK3-201ENST00000316763 RSF1Q96T23 1441 aaPredicted RBP24.59■■□□□ 1.53
VRK3-201ENST00000316763 CC2D2AQ9P2K1 1620 aa24.51■■□□□ 1.51
VRK3-201ENST00000316763 DNAJC5BQ9UF47 199 aa24.47■■□□□ 1.51
VRK3-201ENST00000316763 WIZO95785 1651 aa24.38■■□□□ 1.49
VRK3-201ENST00000316763 ATAD2BQ9ULI0 1458 aa24.37■■□□□ 1.49
VRK3-201ENST00000316763 PEG3Q9GZU2 1588 aa24.35■■□□□ 1.49
VRK3-201ENST00000316763 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
VRK3-201ENST00000316763 NCAPD3P42695 1498 aa24.27■■□□□ 1.48
VRK3-201ENST00000316763 BAZ1BQ9UIG0 1483 aaKnown RBP24.19■■□□□ 1.46
VRK3-201ENST00000316763 HMGXB3Q12766 1538 aa24.17■■□□□ 1.46
VRK3-201ENST00000316763 TOP2AP11388 1531 aaKnown RBP24.09■■□□□ 1.45
VRK3-201ENST00000316763 CCDC88BA6NC98 1476 aa23.84■■□□□ 1.41
VRK3-201ENST00000316763 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
VRK3-201ENST00000316763 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
VRK3-201ENST00000316763 NESP48681 1621 aa23.59■■□□□ 1.37
VRK3-201ENST00000316763 CFTRP13569 1480 aa23.56■■□□□ 1.36
VRK3-201ENST00000316763 LAMC3Q9Y6N6 1575 aa23.54■■□□□ 1.36
VRK3-201ENST00000316763 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
VRK3-201ENST00000316763 PDS5BQ9NTI5 1447 aa23.37■■□□□ 1.33
VRK3-201ENST00000316763 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.33
VRK3-201ENST00000316763 KIF21AQ7Z4S6 1674 aa23.32■■□□□ 1.32
VRK3-201ENST00000316763 ERCC6Q03468 1493 aa23.27■■□□□ 1.32
VRK3-201ENST00000316763 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
VRK3-201ENST00000316763 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
VRK3-201ENST00000316763 ABCC8Q09428 1581 aa23.22■■□□□ 1.31
VRK3-201ENST00000316763 WRNQ14191 1432 aaPredicted RBP eCLIP23.12■■□□□ 1.29
VRK3-201ENST00000316763 MRC2Q9UBG0 1479 aa23.1■■□□□ 1.29
VRK3-201ENST00000316763 THOC2Q8NI27 1593 aaKnown RBP23.09■■□□□ 1.29
VRK3-201ENST00000316763 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.29
VRK3-201ENST00000316763 CUX1P39880 1505 aa23.04■■□□□ 1.28
VRK3-201ENST00000316763 TOPBP1Q92547 1522 aa23.02■■□□□ 1.28
VRK3-201ENST00000316763 SYNJ1O43426 1573 aa23.01■■□□□ 1.27
VRK3-201ENST00000316763 DNMBPQ6XZF7 1577 aa23.01■■□□□ 1.27
VRK3-201ENST00000316763 WDR62O43379 1518 aa23.01■■□□□ 1.27
VRK3-201ENST00000316763 TOP2BQ02880 1626 aa22.95■■□□□ 1.26
VRK3-201ENST00000316763 BIVM-ERCC5R4GMW8 1640 aa22.94■■□□□ 1.26
VRK3-201ENST00000316763 LOC105371045A0A1W2PR82 267 aa22.92■■□□□ 1.26
VRK3-201ENST00000316763 FGD5Q6ZNL6 1462 aa22.87■■□□□ 1.25
VRK3-201ENST00000316763 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
VRK3-201ENST00000316763 CUX2O14529 1486 aa22.82■■□□□ 1.24
VRK3-201ENST00000316763 SOGA1O94964 1423 aa22.79■■□□□ 1.24
VRK3-201ENST00000316763 RAD54L2Q9Y4B4 1467 aa22.78■■□□□ 1.24
VRK3-201ENST00000316763 FAM9AQ8IZU1 332 aaPredicted RBP22.77■■□□□ 1.24
VRK3-201ENST00000316763 EEA1Q15075 1411 aa22.75■■□□□ 1.23
VRK3-201ENST00000316763 TARBP1Q13395 1621 aaKnown RBP22.74■■□□□ 1.23
VRK3-201ENST00000316763 IFT140Q96RY7 1462 aa22.72■■□□□ 1.23
VRK3-201ENST00000316763 PCGF6Q9BYE7 350 aa22.72■■□□□ 1.23
VRK3-201ENST00000316763 RUSC2Q8N2Y8 1516 aa22.7■■□□□ 1.22
VRK3-201ENST00000316763 HRCP23327 699 aa22.66■■□□□ 1.22
VRK3-201ENST00000316763 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
VRK3-201ENST00000316763 ABCA10Q8WWZ4 1543 aa22.65■■□□□ 1.22
VRK3-201ENST00000316763 ZNF608Q9ULD9 1512 aaPredicted RBP22.63■■□□□ 1.21
VRK3-201ENST00000316763 CSRNP3Q8WYN3 585 aa22.62■■□□□ 1.21
VRK3-201ENST00000316763 TDRD9Q8NDG6 1382 aaKnown RBP22.61■■□□□ 1.21
VRK3-201ENST00000316763 AQRO60306 1485 aaKnown RBP eCLIP22.57■■□□□ 1.25e-7■■■■■ 54.7
VRK3-201ENST00000316763 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
VRK3-201ENST00000316763 EIF4G3O43432 1585 aaKnown RBP22.54■■□□□ 1.2
VRK3-201ENST00000316763 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
VRK3-201ENST00000316763 GAPVD1Q14C86 1478 aa22.52■■□□□ 1.2
VRK3-201ENST00000316763 TRIM26Q12899 539 aaPredicted RBP22.5■■□□□ 1.19
VRK3-201ENST00000316763 PBRM1Q86U86 1689 aa22.45■■□□□ 1.18
VRK3-201ENST00000316763 KIF21BO75037 1637 aa22.43■■□□□ 1.18
VRK3-201ENST00000316763 GRIN2BQ13224 1484 aa22.43■■□□□ 1.18
VRK3-201ENST00000316763 EHMT2Q96KQ7 1210 aa22.41■■□□□ 1.18
VRK3-201ENST00000316763 IGF1RP08069 1367 aa22.4■■□□□ 1.18
VRK3-201ENST00000316763 PRXQ9BXM0 1461 aa22.4■■□□□ 1.18
VRK3-201ENST00000316763 GOLGA3Q08378 1498 aa22.4■■□□□ 1.18
VRK3-201ENST00000316763 ERICH3Q5RHP9 1530 aa22.39■■□□□ 1.17
VRK3-201ENST00000316763 SNAPC4Q5SXM2 1469 aa22.35■■□□□ 1.17
VRK3-201ENST00000316763 TNIKQ9UKE5 1360 aa22.34■■□□□ 1.17
VRK3-201ENST00000316763 RAPGEF2Q9Y4G8 1499 aa22.33■■□□□ 1.17
VRK3-201ENST00000316763 MAGI1Q96QZ7 1491 aaPredicted RBP22.31■■□□□ 1.16
VRK3-201ENST00000316763 CUL7Q14999 1698 aa22.28■■□□□ 1.16
VRK3-201ENST00000316763 CARMIL1Q5VZK9 1371 aa22.28■■□□□ 1.16
VRK3-201ENST00000316763 UBTFP17480 764 aaKnown RBP22.27■■□□□ 1.16
VRK3-201ENST00000316763 ADAMTS12P58397 1594 aa22.27■■□□□ 1.16
VRK3-201ENST00000316763 FHAD1B1AJZ9 1412 aa22.26■■□□□ 1.15
VRK3-201ENST00000316763 SYNJ2O15056 1496 aa22.23■■□□□ 1.15
VRK3-201ENST00000316763 FBLN2P98095 1184 aa22.22■■□□□ 1.15
VRK3-201ENST00000316763 CHMP7Q8WUX9 453 aaPredicted RBP22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms