RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 EIF4G3O43432 1585 aaKnown RBP21.59■■□□□ 1.05
PTPN9-201ENST00000306726 KIF21BO75037 1637 aa21.58■■□□□ 1.05
PTPN9-201ENST00000306726 PBRM1Q86U86 1689 aa21.58■■□□□ 1.04
PTPN9-201ENST00000306726 TDRD9Q8NDG6 1382 aaKnown RBP21.56■■□□□ 1.04
PTPN9-201ENST00000306726 ATP1B4Q9UN42 357 aaPredicted RBP21.55■■□□□ 1.04
PTPN9-201ENST00000306726 MAGI1Q96QZ7 1491 aaPredicted RBP21.54■■□□□ 1.04
PTPN9-201ENST00000306726 IGF1RP08069 1367 aa21.53■■□□□ 1.04
PTPN9-201ENST00000306726 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
PTPN9-201ENST00000306726 ZNF608Q9ULD9 1512 aaPredicted RBP21.52■■□□□ 1.03
PTPN9-201ENST00000306726 PRXQ9BXM0 1461 aa21.51■■□□□ 1.03
PTPN9-201ENST00000306726 AQRO60306 1485 aaKnown RBP eCLIP21.49■■□□□ 1.03
PTPN9-201ENST00000306726 GOLGA3Q08378 1498 aa21.49■■□□□ 1.03
PTPN9-201ENST00000306726 FHAD1B1AJZ9 1412 aa21.49■■□□□ 1.03
PTPN9-201ENST00000306726 CARMIL1Q5VZK9 1371 aa21.47■■□□□ 1.03
PTPN9-201ENST00000306726 RAPGEF2Q9Y4G8 1499 aa21.47■■□□□ 1.03
PTPN9-201ENST00000306726 ADAMTS12P58397 1594 aa21.46■■□□□ 1.03
PTPN9-201ENST00000306726 SNAPC4Q5SXM2 1469 aa21.41■■□□□ 1.02
PTPN9-201ENST00000306726 SYNJ2O15056 1496 aa21.4■■□□□ 1.02
PTPN9-201ENST00000306726 TNIKQ9UKE5 1360 aa21.32■■□□□ 1
PTPN9-201ENST00000306726 CNGB1Q14028 1251 aaPredicted RBP21.31■■□□□ 1
PTPN9-201ENST00000306726 GRIN2AQ12879 1464 aa21.3■■□□□ 1
PTPN9-201ENST00000306726 HIRIP3Q9BW71 556 aaPredicted RBP21.29■■□□□ 1
PTPN9-201ENST00000306726 CHMP7Q8WUX9 453 aaPredicted RBP21.27■□□□□ 0.99
PTPN9-201ENST00000306726 CTTNBP2Q8WZ74 1663 aa21.24■□□□□ 0.99
PTPN9-201ENST00000306726 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
PTPN9-201ENST00000306726 NUP160Q12769 1436 aa21.2■□□□□ 0.98
PTPN9-201ENST00000306726 KIAA0586Q9BVV6 1533 aa21.18■□□□□ 0.98
PTPN9-201ENST00000306726 CHD1O14646 1710 aa21.17■□□□□ 0.98
PTPN9-201ENST00000306726 IQGAP2Q13576 1575 aa21.14■□□□□ 0.97
PTPN9-201ENST00000306726 EFCAB5A4FU69 1503 aa21.13■□□□□ 0.97
PTPN9-201ENST00000306726 FBLN2P98095 1184 aa21.1■□□□□ 0.97
PTPN9-201ENST00000306726 CEP170Q5SW79 1584 aa21.09■□□□□ 0.97
PTPN9-201ENST00000306726 KCNH8Q96L42 1107 aa21.08■□□□□ 0.97
PTPN9-201ENST00000306726 P3H3Q8IVL6 736 aa21.07■□□□□ 0.96
PTPN9-201ENST00000306726 UGGT2Q9NYU1 1516 aa21.06■□□□□ 0.96
PTPN9-201ENST00000306726 CLIP1P30622 1438 aa21.05■□□□□ 0.96
PTPN9-201ENST00000306726 DDX10Q13206 875 aaKnown RBP21.03■□□□□ 0.96
PTPN9-201ENST00000306726 FAM50AQ14320 339 aaKnown RBP21.03■□□□□ 0.96
PTPN9-201ENST00000306726 TRIM52Q96A61 297 aa21.03■□□□□ 0.96
PTPN9-201ENST00000306726 CLASP1Q7Z460 1538 aa21.02■□□□□ 0.96
PTPN9-201ENST00000306726 CARMIL2Q6F5E8 1435 aa21■□□□□ 0.95
PTPN9-201ENST00000306726 FKBP8Q14318 412 aa20.99■□□□□ 0.95
PTPN9-201ENST00000306726 SAMD9Q5K651 1589 aa20.99■□□□□ 0.95
PTPN9-201ENST00000306726 OSCARQ8IYS5 282 aa20.98■□□□□ 0.95
PTPN9-201ENST00000306726 SHROOM2Q13796 1616 aa20.97■□□□□ 0.95
PTPN9-201ENST00000306726 MYT1Q01538 1121 aa20.96■□□□□ 0.95
PTPN9-201ENST00000306726 IRX6P78412 446 aaPredicted RBP20.95■□□□□ 0.94
PTPN9-201ENST00000306726 NEFLP07196 543 aa20.94■□□□□ 0.94
PTPN9-201ENST00000306726 SENP3-EIF4A1A0A087X0R7 540 aa20.94■□□□□ 0.94
PTPN9-201ENST00000306726 SUPT16HQ9Y5B9 1047 aaKnown RBP20.94■□□□□ 0.94
PTPN9-201ENST00000306726 ARHGAP35Q9NRY4 1499 aa20.91■□□□□ 0.94
PTPN9-201ENST00000306726 JPH4Q96JJ6 628 aa20.9■□□□□ 0.94
PTPN9-201ENST00000306726 KIAA0556O60303 1618 aa20.9■□□□□ 0.94
PTPN9-201ENST00000306726 FMN1Q68DA7 1419 aa20.89■□□□□ 0.94
PTPN9-201ENST00000306726 KANK4Q5T7N3 995 aaPredicted RBP20.86■□□□□ 0.93
PTPN9-201ENST00000306726 VPS8Q8N3P4 1428 aa20.85■□□□□ 0.93
PTPN9-201ENST00000306726 DISP1Q96F81 1524 aa20.84■□□□□ 0.93
PTPN9-201ENST00000306726 POLR3GLQ9BT43 218 aa20.83■□□□□ 0.93
PTPN9-201ENST00000306726 PRG4Q92954 1404 aaPredicted RBP20.83■□□□□ 0.93
PTPN9-201ENST00000306726 ARAP1Q96P48 1450 aa20.83■□□□□ 0.93
PTPN9-201ENST00000306726 SIN3AQ96ST3 1273 aa20.82■□□□□ 0.92
PTPN9-201ENST00000306726 ERICH6Q7L0X2 663 aa20.8■□□□□ 0.92
PTPN9-201ENST00000306726 ARID3CA6NKF2 412 aa20.78■□□□□ 0.92
PTPN9-201ENST00000306726 FHOD3Q2V2M9 1422 aa20.76■□□□□ 0.91
PTPN9-201ENST00000306726 FYCO1Q9BQS8 1478 aa20.76■□□□□ 0.91
PTPN9-201ENST00000306726 CASKIN1Q8WXD9 1431 aa20.74■□□□□ 0.91
PTPN9-201ENST00000306726 HECW1Q76N89 1606 aa20.72■□□□□ 0.91
PTPN9-201ENST00000306726 PTPRGP23470 1445 aa20.71■□□□□ 0.91
PTPN9-201ENST00000306726 MAP3K1Q13233 1512 aa20.71■□□□□ 0.91
PTPN9-201ENST00000306726 TSHZ2Q9NRE2 1034 aa20.7■□□□□ 0.9
PTPN9-201ENST00000306726 CCDC18Q5T9S5 1454 aa20.68■□□□□ 0.9
PTPN9-201ENST00000306726 RAPGEF6Q8TEU7 1601 aa20.66■□□□□ 0.9
PTPN9-201ENST00000306726 PCF11O94913 1555 aaKnown RBP20.65■□□□□ 0.9
PTPN9-201ENST00000306726 UHRF1BP1LA0JNW5 1464 aa20.64■□□□□ 0.89
PTPN9-201ENST00000306726 ABCA8O94911 1581 aa20.63■□□□□ 0.89
PTPN9-201ENST00000306726 UACAQ9BZF9 1416 aa20.61■□□□□ 0.89
PTPN9-201ENST00000306726 ARHGEF11O15085 1522 aa20.6■□□□□ 0.89
PTPN9-201ENST00000306726 ABCC2Q92887 1545 aa20.58■□□□□ 0.89
PTPN9-201ENST00000306726 CFAP43Q8NDM7 1665 aa20.58■□□□□ 0.89
PTPN9-201ENST00000306726 ANP32CO43423 234 aa20.58■□□□□ 0.88
PTPN9-201ENST00000306726 ERCC6L2Q5T890 1561 aa20.57■□□□□ 0.88
PTPN9-201ENST00000306726 HNRNPUQ00839 825 aaKnown RBP eCLIP20.55■□□□□ 0.88
PTPN9-201ENST00000306726 TIAM1Q13009 1591 aa20.54■□□□□ 0.88
PTPN9-201ENST00000306726 CDK11AQ9UQ88 783 aaPredicted RBP20.54■□□□□ 0.88
PTPN9-201ENST00000306726 ANP32EQ9BTT0 268 aa20.53■□□□□ 0.88
PTPN9-201ENST00000306726 EPRSP07814 1512 aaKnown RBP20.52■□□□□ 0.88
PTPN9-201ENST00000306726 RIMBP3CA6NJZ7 1639 aa20.52■□□□□ 0.88
PTPN9-201ENST00000306726 RIMBP3BA6NNM3 1639 aa20.52■□□□□ 0.88
PTPN9-201ENST00000306726 RIMBP3Q9UFD9 1639 aa20.52■□□□□ 0.88
PTPN9-201ENST00000306726 NUP153P49790 1475 aaKnown RBP20.51■□□□□ 0.87
PTPN9-201ENST00000306726 PLB1Q6P1J6 1458 aa20.51■□□□□ 0.87
PTPN9-201ENST00000306726 CHIC2Q9UKJ5 165 aa20.5■□□□□ 0.87
PTPN9-201ENST00000306726 EHBP1L1Q8N3D4 1523 aa20.48■□□□□ 0.87
PTPN9-201ENST00000306726 FAM9BQ8IZU0 186 aa20.47■□□□□ 0.87
PTPN9-201ENST00000306726 ZNF326Q5BKZ1 582 aaKnown RBP20.46■□□□□ 0.87
PTPN9-201ENST00000306726 KDM5BQ9UGL1 1544 aa20.46■□□□□ 0.87
PTPN9-201ENST00000306726 DHX57Q6P158 1386 aaKnown RBP20.44■□□□□ 0.86
PTPN9-201ENST00000306726 LRRC9Q6ZRR7 1453 aa20.43■□□□□ 0.86
PTPN9-201ENST00000306726 NPM1P06748 294 aaKnown RBP eCLIP20.42■□□□□ 0.86
PTPN9-201ENST00000306726 MTUS2Q5JR59 1369 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms