RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 NISCHQ9Y2I1 1504 aa30.73■■■□□ 2.51
PTPN9-201ENST00000306726 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
PTPN9-201ENST00000306726 ZCCHC6Q5VYS8 1495 aaKnown RBP25.75■■□□□ 1.71
PTPN9-201ENST00000306726 ABCC9O60706 1549 aa25.7■■□□□ 1.7
PTPN9-201ENST00000306726 DCAF1Q9Y4B6 1507 aa25.64■■□□□ 1.69
PTPN9-201ENST00000306726 MYO15BQ96JP2 1530 aa25.55■■□□□ 1.68
PTPN9-201ENST00000306726 SHROOM4Q9ULL8 1493 aa25.42■■□□□ 1.66
PTPN9-201ENST00000306726 NACADO15069 1562 aa25.41■■□□□ 1.66
PTPN9-201ENST00000306726 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
PTPN9-201ENST00000306726 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
PTPN9-201ENST00000306726 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
PTPN9-201ENST00000306726 SCRIBQ14160 1630 aa24.62■■□□□ 1.53
PTPN9-201ENST00000306726 UNC13AQ9UPW8 1703 aa24.48■■□□□ 1.51
PTPN9-201ENST00000306726 PCGF6Q9BYE7 350 aa24.42■■□□□ 1.5
PTPN9-201ENST00000306726 EHMT2Q96KQ7 1210 aa24.34■■□□□ 1.49
PTPN9-201ENST00000306726 BICRAQ9NZM4 1560 aa24.27■■□□□ 1.48
PTPN9-201ENST00000306726 PPARGC1BQ86YN6 1023 aaKnown RBP24.2■■□□□ 1.47
PTPN9-201ENST00000306726 PABPN1Q86U42 306 aaKnown RBP eCLIP24.02■■□□□ 1.44
PTPN9-201ENST00000306726 LOC105371045A0A1W2PR82 267 aa23.86■■□□□ 1.41
PTPN9-201ENST00000306726 BAZ1AQ9NRL2 1556 aaPredicted RBP23.86■■□□□ 1.41
PTPN9-201ENST00000306726 HRCP23327 699 aa23.82■■□□□ 1.4
PTPN9-201ENST00000306726 FAM9AQ8IZU1 332 aaPredicted RBP23.77■■□□□ 1.4
PTPN9-201ENST00000306726 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
PTPN9-201ENST00000306726 SMARCA4P51532 1647 aa23.71■■□□□ 1.39
PTPN9-201ENST00000306726 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
PTPN9-201ENST00000306726 EIF4G1Q04637 1599 aaKnown RBP23.65■■□□□ 1.38
PTPN9-201ENST00000306726 MROH2BQ7Z745 1585 aa23.58■■□□□ 1.36
PTPN9-201ENST00000306726 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
PTPN9-201ENST00000306726 PEG3Q9GZU2 1588 aa23.56■■□□□ 1.36
PTPN9-201ENST00000306726 SMARCA2P51531 1590 aa23.55■■□□□ 1.36
PTPN9-201ENST00000306726 TTBK1Q5TCY1 1321 aaPredicted RBP23.51■■□□□ 1.35
PTPN9-201ENST00000306726 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
PTPN9-201ENST00000306726 HMGXB3Q12766 1538 aa23.37■■□□□ 1.33
PTPN9-201ENST00000306726 NCAPD3P42695 1498 aa23.36■■□□□ 1.33
PTPN9-201ENST00000306726 CC2D2AQ9P2K1 1620 aa23.36■■□□□ 1.33
PTPN9-201ENST00000306726 WIZO95785 1651 aa23.34■■□□□ 1.33
PTPN9-201ENST00000306726 TOP2AP11388 1531 aaKnown RBP23.31■■□□□ 1.32
PTPN9-201ENST00000306726 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
PTPN9-201ENST00000306726 TRIM41Q8WV44 630 aa23■■□□□ 1.27
PTPN9-201ENST00000306726 TRIM26Q12899 539 aaPredicted RBP22.98■■□□□ 1.27
PTPN9-201ENST00000306726 CCDC88BA6NC98 1476 aa22.9■■□□□ 1.26
PTPN9-201ENST00000306726 DNAJC5BQ9UF47 199 aa22.81■■□□□ 1.24
PTPN9-201ENST00000306726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.78■■□□□ 1.24
PTPN9-201ENST00000306726 CCER1Q8TC90 406 aaPredicted RBP22.75■■□□□ 1.23
PTPN9-201ENST00000306726 YTHDC1Q96MU7 727 aaKnown RBP22.71■■□□□ 1.23
PTPN9-201ENST00000306726 LAMC3Q9Y6N6 1575 aa22.7■■□□□ 1.22
PTPN9-201ENST00000306726 CFTRP13569 1480 aa22.68■■□□□ 1.22
PTPN9-201ENST00000306726 CADPSQ9ULU8 1353 aa22.68■■□□□ 1.22
PTPN9-201ENST00000306726 RANGAP1P46060 587 aaPredicted RBP22.66■■□□□ 1.22
PTPN9-201ENST00000306726 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
PTPN9-201ENST00000306726 SCAF1Q9H7N4 1312 aaKnown RBP22.55■■□□□ 1.2
PTPN9-201ENST00000306726 PDS5BQ9NTI5 1447 aa22.52■■□□□ 1.2
PTPN9-201ENST00000306726 ZEB1P37275 1124 aaPredicted RBP22.46■■□□□ 1.19
PTPN9-201ENST00000306726 FANCD2Q9BXW9 1451 aa22.4■■□□□ 1.18
PTPN9-201ENST00000306726 CEP164Q9UPV0 1460 aa22.36■■□□□ 1.17
PTPN9-201ENST00000306726 NESP48681 1621 aa22.36■■□□□ 1.17
PTPN9-201ENST00000306726 ABCC8Q09428 1581 aa22.35■■□□□ 1.17
PTPN9-201ENST00000306726 GTF3C3Q9Y5Q9 886 aa22.3■■□□□ 1.16
PTPN9-201ENST00000306726 WRNQ14191 1432 aaPredicted RBP eCLIP22.29■■□□□ 1.16
PTPN9-201ENST00000306726 NEUROD1Q13562 356 aa22.26■■□□□ 1.15
PTPN9-201ENST00000306726 ERCC6Q03468 1493 aa22.24■■□□□ 1.15
PTPN9-201ENST00000306726 UBTFP17480 764 aaKnown RBP22.23■■□□□ 1.15
PTPN9-201ENST00000306726 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
PTPN9-201ENST00000306726 MRC2Q9UBG0 1479 aa22.21■■□□□ 1.15
PTPN9-201ENST00000306726 DIEXFQ68CQ4 756 aaKnown RBP22.21■■□□□ 1.15
PTPN9-201ENST00000306726 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
PTPN9-201ENST00000306726 BIVM-ERCC5R4GMW8 1640 aa22.21■■□□□ 1.15
PTPN9-201ENST00000306726 TOP2BQ02880 1626 aa22.19■■□□□ 1.14
PTPN9-201ENST00000306726 HNRNPUL2Q1KMD3 747 aaKnown RBP22.19■■□□□ 1.14
PTPN9-201ENST00000306726 CENPBP07199 599 aaPredicted RBP22.15■■□□□ 1.14
PTPN9-201ENST00000306726 PELP1Q8IZL8 1130 aaKnown RBP22.12■■□□□ 1.13
PTPN9-201ENST00000306726 CUX1P39880 1505 aa22.11■■□□□ 1.13
PTPN9-201ENST00000306726 WDR62O43379 1518 aa22.11■■□□□ 1.13
PTPN9-201ENST00000306726 TOPBP1Q92547 1522 aa22.1■■□□□ 1.13
PTPN9-201ENST00000306726 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
PTPN9-201ENST00000306726 THOC2Q8NI27 1593 aaKnown RBP22.06■■□□□ 1.12
PTPN9-201ENST00000306726 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
PTPN9-201ENST00000306726 ACIN1Q9UKV3 1341 aaKnown RBP22.05■■□□□ 1.12
PTPN9-201ENST00000306726 FGD5Q6ZNL6 1462 aa21.97■■□□□ 1.11
PTPN9-201ENST00000306726 EEA1Q15075 1411 aa21.97■■□□□ 1.11
PTPN9-201ENST00000306726 WDR97A6NE52 1622 aa21.95■■□□□ 1.1
PTPN9-201ENST00000306726 POLA1P09884 1462 aaPredicted RBP21.93■■□□□ 1.1
PTPN9-201ENST00000306726 IFT140Q96RY7 1462 aa21.91■■□□□ 1.1
PTPN9-201ENST00000306726 CUX2O14529 1486 aa21.9■■□□□ 1.1
PTPN9-201ENST00000306726 SOGA1O94964 1423 aa21.88■■□□□ 1.09
PTPN9-201ENST00000306726 ABCA10Q8WWZ4 1543 aa21.88■■□□□ 1.09
PTPN9-201ENST00000306726 KIF27Q86VH2 1401 aa21.84■■□□□ 1.09
PTPN9-201ENST00000306726 APLP2Q06481 763 aa21.83■■□□□ 1.09
PTPN9-201ENST00000306726 ITGAEP38570 1179 aa21.83■■□□□ 1.08
PTPN9-201ENST00000306726 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
PTPN9-201ENST00000306726 RAD54L2Q9Y4B4 1467 aa21.73■■□□□ 1.07
PTPN9-201ENST00000306726 ABCA5Q8WWZ7 1642 aa21.7■■□□□ 1.06
PTPN9-201ENST00000306726 MIER1Q8N108 512 aa21.68■■□□□ 1.06
PTPN9-201ENST00000306726 ERICH3Q5RHP9 1530 aa21.67■■□□□ 1.06
PTPN9-201ENST00000306726 GAPVD1Q14C86 1478 aa21.66■■□□□ 1.06
PTPN9-201ENST00000306726 CUL7Q14999 1698 aa21.63■■□□□ 1.05
PTPN9-201ENST00000306726 GRIN2BQ13224 1484 aa21.62■■□□□ 1.05
PTPN9-201ENST00000306726 ZNF316A6NFI3 1004 aaPredicted RBP21.62■■□□□ 1.05
PTPN9-201ENST00000306726 BCANQ96GW7 911 aa21.62■■□□□ 1.05
PTPN9-201ENST00000306726 CSRNP3Q8WYN3 585 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms