RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 IFT140Q96RY7 1462 aa16.12■□□□□ 0.17
LSM3-201ENST00000306024 HNRNPUL2Q1KMD3 747 aaKnown RBP16.12■□□□□ 0.17
LSM3-201ENST00000306024 ABCA10Q8WWZ4 1543 aa16.11■□□□□ 0.17
LSM3-201ENST00000306024 GRIN2BQ13224 1484 aa16.04■□□□□ 0.16
LSM3-201ENST00000306024 ARID3CA6NKF2 412 aa16.04■□□□□ 0.16
LSM3-201ENST00000306024 PRXQ9BXM0 1461 aa16.03■□□□□ 0.16
LSM3-201ENST00000306024 ZNF608Q9ULD9 1512 aaPredicted RBP16.03■□□□□ 0.16
LSM3-201ENST00000306024 BCL11AQ9H165 835 aa16.02■□□□□ 0.16
LSM3-201ENST00000306024 KIF21BO75037 1637 aa16■□□□□ 0.15
LSM3-201ENST00000306024 WDR62O43379 1518 aa15.99■□□□□ 0.15
LSM3-201ENST00000306024 FHAD1B1AJZ9 1412 aa15.97■□□□□ 0.15
LSM3-201ENST00000306024 ERICH3Q5RHP9 1530 aa15.96■□□□□ 0.15
LSM3-201ENST00000306024 SNAPC4Q5SXM2 1469 aa15.94■□□□□ 0.14
LSM3-201ENST00000306024 ITGAEP38570 1179 aa15.89■□□□□ 0.13
LSM3-201ENST00000306024 JPH4Q96JJ6 628 aa15.88■□□□□ 0.13
LSM3-201ENST00000306024 VPS8Q8N3P4 1428 aa15.87■□□□□ 0.13
LSM3-201ENST00000306024 ZNF316A6NFI3 1004 aaPredicted RBP15.86■□□□□ 0.13
LSM3-201ENST00000306024 THOC2Q8NI27 1593 aaKnown RBP15.86■□□□□ 0.13
LSM3-201ENST00000306024 FHOD3Q2V2M9 1422 aa15.86■□□□□ 0.13
LSM3-201ENST00000306024 ANP32EQ9BTT0 268 aa15.85■□□□□ 0.13
LSM3-201ENST00000306024 CUL7Q14999 1698 aa15.85■□□□□ 0.13
LSM3-201ENST00000306024 TARBP1Q13395 1621 aaKnown RBP15.85■□□□□ 0.13
LSM3-201ENST00000306024 MAGI1Q96QZ7 1491 aaPredicted RBP15.81■□□□□ 0.12
LSM3-201ENST00000306024 FAM50AQ14320 339 aaKnown RBP15.8■□□□□ 0.12
LSM3-201ENST00000306024 CDK11AQ9UQ88 783 aaPredicted RBP15.8■□□□□ 0.12
LSM3-201ENST00000306024 EIF4G3O43432 1585 aaKnown RBP15.8■□□□□ 0.12
LSM3-201ENST00000306024 CARMIL2Q6F5E8 1435 aa15.8■□□□□ 0.12
LSM3-201ENST00000306024 ABCA5Q8WWZ7 1642 aa15.8■□□□□ 0.12
LSM3-201ENST00000306024 SYNJ2O15056 1496 aa15.79■□□□□ 0.12
LSM3-201ENST00000306024 MTUS2Q5JR59 1369 aa15.78■□□□□ 0.12
LSM3-201ENST00000306024 GRIN2AQ12879 1464 aa15.77■□□□□ 0.12
LSM3-201ENST00000306024 ERICH6Q7L0X2 663 aa15.77■□□□□ 0.12
LSM3-201ENST00000306024 ARHGAP35Q9NRY4 1499 aa15.77■□□□□ 0.11
LSM3-201ENST00000306024 FMN1Q68DA7 1419 aa15.76■□□□□ 0.11
LSM3-201ENST00000306024 OSCARQ8IYS5 282 aa15.75■□□□□ 0.11
LSM3-201ENST00000306024 ARAP1Q96P48 1450 aa15.75■□□□□ 0.11
LSM3-201ENST00000306024 MIER1Q8N108 512 aa15.74■□□□□ 0.11
LSM3-201ENST00000306024 KANK4Q5T7N3 995 aaPredicted RBP15.73■□□□□ 0.11
LSM3-201ENST00000306024 PBRM1Q86U86 1689 aa15.72■□□□□ 0.11
LSM3-201ENST00000306024 ADAMTS12P58397 1594 aa15.72■□□□□ 0.11
LSM3-201ENST00000306024 KIAA0586Q9BVV6 1533 aa15.72■□□□□ 0.11
LSM3-201ENST00000306024 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
LSM3-201ENST00000306024 NPM1P06748 294 aaKnown RBP eCLIP15.69■□□□□ 0.1
LSM3-201ENST00000306024 IQGAP2Q13576 1575 aa15.68■□□□□ 0.1
LSM3-201ENST00000306024 PLEKHD1A6NEE1 506 aa15.67■□□□□ 0.1
LSM3-201ENST00000306024 BCANQ96GW7 911 aa15.66■□□□□ 0.1
LSM3-201ENST00000306024 ZNF777Q9ULD5 760 aaPredicted RBP15.65■□□□□ 0.1
LSM3-201ENST00000306024 PTPRGP23470 1445 aa15.65■□□□□ 0.1
LSM3-201ENST00000306024 PRG4Q92954 1404 aaPredicted RBP15.65■□□□□ 0.1
LSM3-201ENST00000306024 EFCAB5A4FU69 1503 aa15.64■□□□□ 0.09
LSM3-201ENST00000306024 KCNH8Q96L42 1107 aa15.63■□□□□ 0.09
LSM3-201ENST00000306024 NEFLP07196 543 aa15.6■□□□□ 0.09
LSM3-201ENST00000306024 MYT1LQ9UL68 1186 aa15.59■□□□□ 0.09
LSM3-201ENST00000306024 CLSPNQ9HAW4 1339 aa15.59■□□□□ 0.09
LSM3-201ENST00000306024 SUPT16HQ9Y5B9 1047 aaKnown RBP15.58■□□□□ 0.08
LSM3-201ENST00000306024 CTTNBP2Q8WZ74 1663 aa15.58■□□□□ 0.08
LSM3-201ENST00000306024 CASKIN1Q8WXD9 1431 aa15.57■□□□□ 0.08
LSM3-201ENST00000306024 NUP160Q12769 1436 aa15.55■□□□□ 0.08
LSM3-201ENST00000306024 TSHZ2Q9NRE2 1034 aa15.54■□□□□ 0.08
LSM3-201ENST00000306024 FYCO1Q9BQS8 1478 aa15.52■□□□□ 0.07
LSM3-201ENST00000306024 CYB5RLQ6IPT4 315 aa15.5■□□□□ 0.07
LSM3-201ENST00000306024 CFDP1Q9UEE9 299 aaPredicted RBP15.5■□□□□ 0.07
LSM3-201ENST00000306024 CHIC2Q9UKJ5 165 aa15.5■□□□□ 0.07
LSM3-201ENST00000306024 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
LSM3-201ENST00000306024 CCNB3Q8WWL7 1395 aa15.49■□□□□ 0.07
LSM3-201ENST00000306024 UGGT2Q9NYU1 1516 aa15.48■□□□□ 0.07
LSM3-201ENST00000306024 PCF11O94913 1555 aaKnown RBP15.48■□□□□ 0.07
LSM3-201ENST00000306024 PLB1Q6P1J6 1458 aa15.46■□□□□ 0.07
LSM3-201ENST00000306024 LRRC9Q6ZRR7 1453 aa15.46■□□□□ 0.06
LSM3-201ENST00000306024 CCDC18Q5T9S5 1454 aa15.44■□□□□ 0.06
LSM3-201ENST00000306024 PRKCSHP14314 528 aaPredicted RBP15.44■□□□□ 0.06
LSM3-201ENST00000306024 TRIM52Q96A61 297 aa15.44■□□□□ 0.06
LSM3-201ENST00000306024 CHD1O14646 1710 aa15.43■□□□□ 0.06
LSM3-201ENST00000306024 DISP1Q96F81 1524 aa15.43■□□□□ 0.06
LSM3-201ENST00000306024 TIAM1Q13009 1591 aa15.42■□□□□ 0.06
LSM3-201ENST00000306024 KIAA0556O60303 1618 aa15.42■□□□□ 0.06
LSM3-201ENST00000306024 CDK13Q14004 1512 aaKnown RBP15.41■□□□□ 0.06
LSM3-201ENST00000306024 HECW1Q76N89 1606 aa15.4■□□□□ 0.06
LSM3-201ENST00000306024 EPRSP07814 1512 aaKnown RBP15.4■□□□□ 0.06
LSM3-201ENST00000306024 FKBP8Q14318 412 aa15.4■□□□□ 0.06
LSM3-201ENST00000306024 UACAQ9BZF9 1416 aa15.4■□□□□ 0.06
LSM3-201ENST00000306024 TSPY4P0CV99 314 aa15.39■□□□□ 0.05
LSM3-201ENST00000306024 TSPY10P0CW01 314 aa15.39■□□□□ 0.05
LSM3-201ENST00000306024 RRP7BPQ9NSQ0 103 aa15.39■□□□□ 0.05
LSM3-201ENST00000306024 PHLDB1Q86UU1 1377 aa15.39■□□□□ 0.05
LSM3-201ENST00000306024 SAMD9Q5K651 1589 aa15.38■□□□□ 0.05
LSM3-201ENST00000306024 NCOA2Q15596 1464 aa15.35■□□□□ 0.05
LSM3-201ENST00000306024 MAP3K1Q13233 1512 aa15.32■□□□□ 0.04
LSM3-201ENST00000306024 TROQ12816 1431 aaPredicted RBP15.31■□□□□ 0.04
LSM3-201ENST00000306024 NUP153P49790 1475 aaKnown RBP15.31■□□□□ 0.04
LSM3-201ENST00000306024 RAPGEF6Q8TEU7 1601 aa15.31■□□□□ 0.04
LSM3-201ENST00000306024 MYOM3Q5VTT5 1437 aa15.3■□□□□ 0.04
LSM3-201ENST00000306024 EHBP1L1Q8N3D4 1523 aa15.3■□□□□ 0.04
LSM3-201ENST00000306024 EFCAB2Q5VUJ9 269 aa15.29■□□□□ 0.04
LSM3-201ENST00000306024 FGD6Q6ZV73 1430 aa15.29■□□□□ 0.04
LSM3-201ENST00000306024 ZNF644Q9H582 1327 aaPredicted RBP15.28■□□□□ 0.04
LSM3-201ENST00000306024 RBM19Q9Y4C8 960 aaKnown RBP15.27■□□□□ 0.04
LSM3-201ENST00000306024 HNRNPMP52272 730 aaKnown RBP eCLIP15.27■□□□□ 0.03
LSM3-201ENST00000306024 ATP10BO94823 1461 aa15.27■□□□□ 0.03
LSM3-201ENST00000306024 ERCC6L2Q5T890 1561 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms