RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 ARHGAP35Q9NRY4 1499 aa24.54■■□□□ 1.52
HERPUD1-201ENST00000300302 PCGF6Q9BYE7 350 aa24.53■■□□□ 1.52
HERPUD1-201ENST00000300302 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
HERPUD1-201ENST00000300302 EFCAB5A4FU69 1503 aa24.46■■□□□ 1.51
HERPUD1-201ENST00000300302 PPARGC1BQ86YN6 1023 aaKnown RBP24.44■■□□□ 1.5
HERPUD1-201ENST00000300302 APLP2Q06481 763 aa24.43■■□□□ 1.5
HERPUD1-201ENST00000300302 FBLN2P98095 1184 aa24.41■■□□□ 1.5
HERPUD1-201ENST00000300302 CHMP7Q8WUX9 453 aaPredicted RBP24.41■■□□□ 1.5
HERPUD1-201ENST00000300302 SYNJ2O15056 1496 aa24.39■■□□□ 1.5
HERPUD1-201ENST00000300302 GRIN2AQ12879 1464 aa24.39■■□□□ 1.49
HERPUD1-201ENST00000300302 IQGAP2Q13576 1575 aa24.35■■□□□ 1.49
HERPUD1-201ENST00000300302 SAMD9Q5K651 1589 aa24.33■■□□□ 1.48
HERPUD1-201ENST00000300302 P3H3Q8IVL6 736 aa24.3■■□□□ 1.48
HERPUD1-201ENST00000300302 KIAA0586Q9BVV6 1533 aa24.29■■□□□ 1.48
HERPUD1-201ENST00000300302 FHOD3Q2V2M9 1422 aa24.29■■□□□ 1.48
HERPUD1-201ENST00000300302 FMN1Q68DA7 1419 aa24.25■■□□□ 1.47
HERPUD1-201ENST00000300302 TTBK1Q5TCY1 1321 aaPredicted RBP24.25■■□□□ 1.47
HERPUD1-201ENST00000300302 UGGT2Q9NYU1 1516 aa24.22■■□□□ 1.47
HERPUD1-201ENST00000300302 CEP170Q5SW79 1584 aa24.22■■□□□ 1.47
HERPUD1-201ENST00000300302 NUP160Q12769 1436 aa24.2■■□□□ 1.46
HERPUD1-201ENST00000300302 MAP3K1Q13233 1512 aa24.19■■□□□ 1.46
HERPUD1-201ENST00000300302 PCF11O94913 1555 aaKnown RBP24.19■■□□□ 1.46
HERPUD1-201ENST00000300302 FYCO1Q9BQS8 1478 aa24.19■■□□□ 1.46
HERPUD1-201ENST00000300302 CHD1O14646 1710 aa24.18■■□□□ 1.46
HERPUD1-201ENST00000300302 CASKIN1Q8WXD9 1431 aa24.17■■□□□ 1.46
HERPUD1-201ENST00000300302 TIAM1Q13009 1591 aa24.13■■□□□ 1.45
HERPUD1-201ENST00000300302 KANK4Q5T7N3 995 aaPredicted RBP24.09■■□□□ 1.45
HERPUD1-201ENST00000300302 KIAA0556O60303 1618 aa24.09■■□□□ 1.45
HERPUD1-201ENST00000300302 ATP1B4Q9UN42 357 aaPredicted RBP24.09■■□□□ 1.45
HERPUD1-201ENST00000300302 CFAP43Q8NDM7 1665 aa24.08■■□□□ 1.45
HERPUD1-201ENST00000300302 DISP1Q96F81 1524 aa24.07■■□□□ 1.44
HERPUD1-201ENST00000300302 JPH4Q96JJ6 628 aa24.05■■□□□ 1.44
HERPUD1-201ENST00000300302 LRRC9Q6ZRR7 1453 aa24.02■■□□□ 1.44
HERPUD1-201ENST00000300302 CARMIL2Q6F5E8 1435 aa24.02■■□□□ 1.44
HERPUD1-201ENST00000300302 HECW1Q76N89 1606 aa23.98■■□□□ 1.43
HERPUD1-201ENST00000300302 CCDC18Q5T9S5 1454 aa23.95■■□□□ 1.42
HERPUD1-201ENST00000300302 CLASP1Q7Z460 1538 aa23.93■■□□□ 1.42
HERPUD1-201ENST00000300302 LRRIQ1Q96JM4 1722 aa23.92■■□□□ 1.42
HERPUD1-201ENST00000300302 PRG4Q92954 1404 aaPredicted RBP23.9■■□□□ 1.42
HERPUD1-201ENST00000300302 OSCARQ8IYS5 282 aa23.9■■□□□ 1.42
HERPUD1-201ENST00000300302 RAPGEF6Q8TEU7 1601 aa23.87■■□□□ 1.41
HERPUD1-201ENST00000300302 RRBP1Q9P2E9 1410 aaKnown RBP23.87■■□□□ 1.41
HERPUD1-201ENST00000300302 MTUS2Q5JR59 1369 aa23.87■■□□□ 1.41
HERPUD1-201ENST00000300302 EPRSP07814 1512 aaKnown RBP23.86■■□□□ 1.41
HERPUD1-201ENST00000300302 SHROOM2Q13796 1616 aa23.86■■□□□ 1.41
HERPUD1-201ENST00000300302 HRCP23327 699 aa23.84■■□□□ 1.41
HERPUD1-201ENST00000300302 EHBP1L1Q8N3D4 1523 aa23.82■■□□□ 1.4
HERPUD1-201ENST00000300302 ERCC6L2Q5T890 1561 aa23.81■■□□□ 1.4
HERPUD1-201ENST00000300302 CCNB3Q8WWL7 1395 aa23.8■■□□□ 1.4
HERPUD1-201ENST00000300302 NUP153P49790 1475 aaKnown RBP23.79■■□□□ 1.4
HERPUD1-201ENST00000300302 PHLDB1Q86UU1 1377 aa23.78■■□□□ 1.4
HERPUD1-201ENST00000300302 CDK13Q14004 1512 aaKnown RBP23.77■■□□□ 1.4
HERPUD1-201ENST00000300302 PLB1Q6P1J6 1458 aa23.76■■□□□ 1.39
HERPUD1-201ENST00000300302 SUPT6HQ7KZ85 1726 aaKnown RBP23.76■■□□□ 1.39
HERPUD1-201ENST00000300302 HNRNPUL2Q1KMD3 747 aaKnown RBP23.75■■□□□ 1.39
HERPUD1-201ENST00000300302 PTPRGP23470 1445 aa23.74■■□□□ 1.39
HERPUD1-201ENST00000300302 ABCA8O94911 1581 aa23.73■■□□□ 1.39
HERPUD1-201ENST00000300302 MAGI3Q5TCQ9 1506 aa23.72■■□□□ 1.39
HERPUD1-201ENST00000300302 CDK11AQ9UQ88 783 aaPredicted RBP23.72■■□□□ 1.39
HERPUD1-201ENST00000300302 NCOA2Q15596 1464 aa23.71■■□□□ 1.39
HERPUD1-201ENST00000300302 ARID3CA6NKF2 412 aa23.7■■□□□ 1.38
HERPUD1-201ENST00000300302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.68■■□□□ 1.38
HERPUD1-201ENST00000300302 ARHGEF11O15085 1522 aa23.66■■□□□ 1.38
HERPUD1-201ENST00000300302 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.64■■□□□ 1.37
HERPUD1-201ENST00000300302 MYOM3Q5VTT5 1437 aa23.64■■□□□ 1.37
HERPUD1-201ENST00000300302 FGD6Q6ZV73 1430 aa23.64■■□□□ 1.37
HERPUD1-201ENST00000300302 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.37
HERPUD1-201ENST00000300302 FAM50AQ14320 339 aaKnown RBP23.62■■□□□ 1.37
HERPUD1-201ENST00000300302 UACAQ9BZF9 1416 aa23.6■■□□□ 1.37
HERPUD1-201ENST00000300302 CCER1Q8TC90 406 aaPredicted RBP23.59■■□□□ 1.37
HERPUD1-201ENST00000300302 TROQ12816 1431 aaPredicted RBP23.58■■□□□ 1.37
HERPUD1-201ENST00000300302 ATP10BO94823 1461 aa23.58■■□□□ 1.36
HERPUD1-201ENST00000300302 ITGAEP38570 1179 aa23.56■■□□□ 1.36
HERPUD1-201ENST00000300302 PLEKHD1A6NEE1 506 aa23.53■■□□□ 1.36
HERPUD1-201ENST00000300302 ABCC2Q92887 1545 aa23.53■■□□□ 1.36
HERPUD1-201ENST00000300302 MIA2Q96PC5 1412 aa23.52■■□□□ 1.36
HERPUD1-201ENST00000300302 ADCY10Q96PN6 1610 aa23.52■■□□□ 1.36
HERPUD1-201ENST00000300302 PTPN23Q9H3S7 1636 aa23.51■■□□□ 1.35
HERPUD1-201ENST00000300302 UHRF1BP1LA0JNW5 1464 aa23.47■■□□□ 1.35
HERPUD1-201ENST00000300302 TCOF1Q13428 1488 aaKnown RBP23.47■■□□□ 1.35
HERPUD1-201ENST00000300302 KIF14Q15058 1648 aa23.45■■□□□ 1.35
HERPUD1-201ENST00000300302 ITSN2Q9NZM3 1697 aa23.43■■□□□ 1.34
HERPUD1-201ENST00000300302 SETD5Q9C0A6 1442 aa23.38■■□□□ 1.33
HERPUD1-201ENST00000300302 RIMBP3CA6NJZ7 1639 aa23.38■■□□□ 1.33
HERPUD1-201ENST00000300302 RIMBP3BA6NNM3 1639 aa23.38■■□□□ 1.33
HERPUD1-201ENST00000300302 RIMBP3Q9UFD9 1639 aa23.38■■□□□ 1.33
HERPUD1-201ENST00000300302 KDM5BQ9UGL1 1544 aa23.37■■□□□ 1.33
HERPUD1-201ENST00000300302 GPATCH8Q9UKJ3 1502 aaKnown RBP23.37■■□□□ 1.33
HERPUD1-201ENST00000300302 ABCC10Q5T3U5 1492 aa23.35■■□□□ 1.33
HERPUD1-201ENST00000300302 ZCCHC11Q5TAX3 1644 aaKnown RBP23.35■■□□□ 1.33
HERPUD1-201ENST00000300302 CFDP1Q9UEE9 299 aaPredicted RBP23.34■■□□□ 1.33
HERPUD1-201ENST00000300302 RAB3GAP2Q9H2M9 1393 aa23.34■■□□□ 1.33
HERPUD1-201ENST00000300302 CYB5RLQ6IPT4 315 aa23.34■■□□□ 1.33
HERPUD1-201ENST00000300302 PTPRKQ15262 1439 aa23.31■■□□□ 1.32
HERPUD1-201ENST00000300302 CDC42BPAQ5VT25 1732 aa23.3■■□□□ 1.32
HERPUD1-201ENST00000300302 HFM1A2PYH4 1435 aa23.28■■□□□ 1.32
HERPUD1-201ENST00000300302 DHX57Q6P158 1386 aaKnown RBP23.28■■□□□ 1.32
HERPUD1-201ENST00000300302 CAMSAP2Q08AD1 1489 aa23.28■■□□□ 1.32
HERPUD1-201ENST00000300302 CLSPNQ9HAW4 1339 aa23.27■■□□□ 1.32
HERPUD1-201ENST00000300302 DNMT1P26358 1616 aaKnown RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms