RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 PCGF6Q9BYE7 350 aa35.77■■■■□ 3.32
PTX3-201ENST00000295927 PPARGC1BQ86YN6 1023 aaKnown RBP35.75■■■■□ 3.31
PTX3-201ENST00000295927 TRIM26Q12899 539 aaPredicted RBP35.75■■■■□ 3.31
PTX3-201ENST00000295927 MAGI1Q96QZ7 1491 aaPredicted RBP35.71■■■■□ 3.31
PTX3-201ENST00000295927 EFCAB5A4FU69 1503 aa35.63■■■■□ 3.29
PTX3-201ENST00000295927 GRIN2AQ12879 1464 aa35.59■■■■□ 3.29
PTX3-201ENST00000295927 SYNJ2O15056 1496 aa35.58■■■■□ 3.29
PTX3-201ENST00000295927 IQGAP2Q13576 1575 aa35.53■■■■□ 3.28
PTX3-201ENST00000295927 P3H3Q8IVL6 736 aa35.52■■■■□ 3.28
PTX3-201ENST00000295927 SAMD9Q5K651 1589 aa35.51■■■■□ 3.28
PTX3-201ENST00000295927 APLP2Q06481 763 aa35.51■■■■□ 3.27
PTX3-201ENST00000295927 CHMP7Q8WUX9 453 aaPredicted RBP35.49■■■■□ 3.27
PTX3-201ENST00000295927 FHOD3Q2V2M9 1422 aa35.48■■■■□ 3.27
PTX3-201ENST00000295927 TTBK1Q5TCY1 1321 aaPredicted RBP35.47■■■■□ 3.27
PTX3-201ENST00000295927 KIAA0586Q9BVV6 1533 aa35.43■■■■□ 3.26
PTX3-201ENST00000295927 FBLN2P98095 1184 aa35.42■■■■□ 3.26
PTX3-201ENST00000295927 CEP170Q5SW79 1584 aa35.39■■■■□ 3.26
PTX3-201ENST00000295927 UGGT2Q9NYU1 1516 aa35.35■■■■□ 3.25
PTX3-201ENST00000295927 PCF11O94913 1555 aaKnown RBP35.33■■■■□ 3.25
PTX3-201ENST00000295927 NUP160Q12769 1436 aa35.32■■■■□ 3.24
PTX3-201ENST00000295927 FMN1Q68DA7 1419 aa35.3■■■■□ 3.24
PTX3-201ENST00000295927 CHD1O14646 1710 aa35.25■■■■□ 3.23
PTX3-201ENST00000295927 FYCO1Q9BQS8 1478 aa35.24■■■■□ 3.23
PTX3-201ENST00000295927 CASKIN1Q8WXD9 1431 aa35.24■■■■□ 3.23
PTX3-201ENST00000295927 MAP3K1Q13233 1512 aa35.23■■■■□ 3.23
PTX3-201ENST00000295927 KANK4Q5T7N3 995 aaPredicted RBP35.22■■■■□ 3.23
PTX3-201ENST00000295927 TIAM1Q13009 1591 aa35.22■■■■□ 3.23
PTX3-201ENST00000295927 DISP1Q96F81 1524 aa35.18■■■■□ 3.22
PTX3-201ENST00000295927 KIAA0556O60303 1618 aa35.17■■■■□ 3.22
PTX3-201ENST00000295927 CFAP43Q8NDM7 1665 aa35.16■■■■□ 3.22
PTX3-201ENST00000295927 ATP1B4Q9UN42 357 aaPredicted RBP35.14■■■■□ 3.22
PTX3-201ENST00000295927 JPH4Q96JJ6 628 aa35.06■■■■□ 3.2
PTX3-201ENST00000295927 LRRIQ1Q96JM4 1722 aa35.04■■■■□ 3.2
PTX3-201ENST00000295927 LRRC9Q6ZRR7 1453 aa35.04■■■■□ 3.2
PTX3-201ENST00000295927 CARMIL2Q6F5E8 1435 aa34.98■■■■□ 3.19
PTX3-201ENST00000295927 HECW1Q76N89 1606 aa34.95■■■■□ 3.19
PTX3-201ENST00000295927 CCDC18Q5T9S5 1454 aa34.87■■■■□ 3.17
PTX3-201ENST00000295927 SHROOM2Q13796 1616 aa34.86■■■■□ 3.17
PTX3-201ENST00000295927 PRG4Q92954 1404 aaPredicted RBP34.84■■■■□ 3.17
PTX3-201ENST00000295927 RAPGEF6Q8TEU7 1601 aa34.84■■■■□ 3.17
PTX3-201ENST00000295927 EPRSP07814 1512 aaKnown RBP34.82■■■■□ 3.16
PTX3-201ENST00000295927 RRBP1Q9P2E9 1410 aaKnown RBP34.8■■■■□ 3.16
PTX3-201ENST00000295927 CLASP1Q7Z460 1538 aa34.79■■■■□ 3.16
PTX3-201ENST00000295927 MTUS2Q5JR59 1369 aa34.77■■■■□ 3.16
PTX3-201ENST00000295927 CDK13Q14004 1512 aaKnown RBP34.75■■■■□ 3.15
PTX3-201ENST00000295927 NUP153P49790 1475 aaKnown RBP34.74■■■■□ 3.15
PTX3-201ENST00000295927 HRCP23327 699 aa34.73■■■■□ 3.15
PTX3-201ENST00000295927 PHLDB1Q86UU1 1377 aa34.73■■■■□ 3.15
PTX3-201ENST00000295927 PLB1Q6P1J6 1458 aa34.73■■■■□ 3.15
PTX3-201ENST00000295927 EHBP1L1Q8N3D4 1523 aa34.72■■■■□ 3.15
PTX3-201ENST00000295927 MAGI3Q5TCQ9 1506 aa34.71■■■■□ 3.15
PTX3-201ENST00000295927 CCNB3Q8WWL7 1395 aa34.69■■■■□ 3.14
PTX3-201ENST00000295927 ARID3CA6NKF2 412 aa34.67■■■■□ 3.14
PTX3-201ENST00000295927 HNRNPUL2Q1KMD3 747 aaKnown RBP34.67■■■■□ 3.14
PTX3-201ENST00000295927 SUPT6HQ7KZ85 1726 aaKnown RBP34.66■■■■□ 3.14
PTX3-201ENST00000295927 ABCA8O94911 1581 aa34.65■■■■□ 3.14
PTX3-201ENST00000295927 ERCC6L2Q5T890 1561 aa34.63■■■■□ 3.13
PTX3-201ENST00000295927 PTPRGP23470 1445 aa34.63■■■■□ 3.13
PTX3-201ENST00000295927 NCOA2Q15596 1464 aa34.6■■■■□ 3.13
PTX3-201ENST00000295927 ARHGEF11O15085 1522 aa34.54■■■■□ 3.12
PTX3-201ENST00000295927 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.51■■■■□ 3.12
PTX3-201ENST00000295927 CDK11AQ9UQ88 783 aaPredicted RBP34.48■■■■□ 3.11
PTX3-201ENST00000295927 FGD6Q6ZV73 1430 aa34.47■■■■□ 3.11
PTX3-201ENST00000295927 MYOM3Q5VTT5 1437 aa34.46■■■■□ 3.11
PTX3-201ENST00000295927 ATP10BO94823 1461 aa34.43■■■■□ 3.1
PTX3-201ENST00000295927 UACAQ9BZF9 1416 aa34.43■■■■□ 3.1
PTX3-201ENST00000295927 FAM50AQ14320 339 aaKnown RBP34.43■■■■□ 3.1
PTX3-201ENST00000295927 OSCARQ8IYS5 282 aa34.42■■■■□ 3.1
PTX3-201ENST00000295927 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.41■■■■□ 3.1
PTX3-201ENST00000295927 TROQ12816 1431 aaPredicted RBP34.4■■■■□ 3.1
PTX3-201ENST00000295927 ITGAEP38570 1179 aa34.38■■■■□ 3.09
PTX3-201ENST00000295927 CCER1Q8TC90 406 aaPredicted RBP34.34■■■■□ 3.09
PTX3-201ENST00000295927 ABCC2Q92887 1545 aa34.33■■■■□ 3.09
PTX3-201ENST00000295927 ADCY10Q96PN6 1610 aa34.32■■■■□ 3.09
PTX3-201ENST00000295927 PTPN23Q9H3S7 1636 aa34.31■■■■□ 3.08
PTX3-201ENST00000295927 ZEB1P37275 1124 aaPredicted RBP34.29■■■■□ 3.08
PTX3-201ENST00000295927 PLEKHD1A6NEE1 506 aa34.28■■■■□ 3.08
PTX3-201ENST00000295927 KIF14Q15058 1648 aa34.27■■■■□ 3.08
PTX3-201ENST00000295927 MIA2Q96PC5 1412 aa34.25■■■■□ 3.07
PTX3-201ENST00000295927 TCOF1Q13428 1488 aaKnown RBP34.23■■■■□ 3.07
PTX3-201ENST00000295927 UHRF1BP1LA0JNW5 1464 aa34.23■■■■□ 3.07
PTX3-201ENST00000295927 ITSN2Q9NZM3 1697 aa34.16■■■■□ 3.06
PTX3-201ENST00000295927 ZCCHC11Q5TAX3 1644 aaKnown RBP34.13■■■■□ 3.05
PTX3-201ENST00000295927 GPATCH8Q9UKJ3 1502 aaKnown RBP34.11■■■■□ 3.05
PTX3-201ENST00000295927 KDM5BQ9UGL1 1544 aa34.11■■■■□ 3.05
PTX3-201ENST00000295927 ABCC10Q5T3U5 1492 aa34.11■■■■□ 3.05
PTX3-201ENST00000295927 PTPRKQ15262 1439 aa34.1■■■■□ 3.05
PTX3-201ENST00000295927 SETD5Q9C0A6 1442 aa34.08■■■■□ 3.05
PTX3-201ENST00000295927 CDC42BPAQ5VT25 1732 aa34.07■■■■□ 3.05
PTX3-201ENST00000295927 RAB3GAP2Q9H2M9 1393 aa34.05■■■■□ 3.04
PTX3-201ENST00000295927 CFDP1Q9UEE9 299 aaPredicted RBP34.02■■■■□ 3.04
PTX3-201ENST00000295927 ZNF644Q9H582 1327 aaPredicted RBP34■■■■□ 3.03
PTX3-201ENST00000295927 CAMSAP2Q08AD1 1489 aa33.97■■■■□ 3.03
PTX3-201ENST00000295927 DHX57Q6P158 1386 aaKnown RBP33.96■■■■□ 3.03
PTX3-201ENST00000295927 DNMT1P26358 1616 aaKnown RBP33.95■■■■□ 3.03
PTX3-201ENST00000295927 HFM1A2PYH4 1435 aa33.93■■■■□ 3.02
PTX3-201ENST00000295927 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.92■■■■□ 3.02
PTX3-201ENST00000295927 DAPK1P53355 1430 aa33.91■■■■□ 3.02
PTX3-201ENST00000295927 TTC37Q6PGP7 1564 aa33.91■■■■□ 3.02
PTX3-201ENST00000295927 PREX2Q70Z35 1606 aa33.9■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms