RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 VPS8Q8N3P4 1428 aa22.21■■□□□ 1.15
SS18-201ENST00000269137 ARAP1Q96P48 1450 aa22.2■■□□□ 1.14
SS18-201ENST00000269137 GRIN2AQ12879 1464 aa22.19■■□□□ 1.14
SS18-201ENST00000269137 EFCAB5A4FU69 1503 aa22.15■■□□□ 1.14
SS18-201ENST00000269137 CHMP7Q8WUX9 453 aaPredicted RBP22.15■■□□□ 1.14
SS18-201ENST00000269137 IQGAP2Q13576 1575 aa22.1■■□□□ 1.13
SS18-201ENST00000269137 KIAA0586Q9BVV6 1533 aa22.1■■□□□ 1.13
SS18-201ENST00000269137 SAMD9Q5K651 1589 aa22.07■■□□□ 1.12
SS18-201ENST00000269137 NUP160Q12769 1436 aa22.06■■□□□ 1.12
SS18-201ENST00000269137 FBLN2P98095 1184 aa22.05■■□□□ 1.12
SS18-201ENST00000269137 CEP170Q5SW79 1584 aa22.04■■□□□ 1.12
SS18-201ENST00000269137 UGGT2Q9NYU1 1516 aa22.03■■□□□ 1.12
SS18-201ENST00000269137 FHOD3Q2V2M9 1422 aa22■■□□□ 1.11
SS18-201ENST00000269137 P3H3Q8IVL6 736 aa21.99■■□□□ 1.11
SS18-201ENST00000269137 TRIM26Q12899 539 aaPredicted RBP21.98■■□□□ 1.11
SS18-201ENST00000269137 APLP2Q06481 763 aa21.96■■□□□ 1.11
SS18-201ENST00000269137 CHD1O14646 1710 aa21.96■■□□□ 1.11
SS18-201ENST00000269137 FMN1Q68DA7 1419 aa21.95■■□□□ 1.1
SS18-201ENST00000269137 PPARGC1BQ86YN6 1023 aaKnown RBP21.94■■□□□ 1.1
SS18-201ENST00000269137 DISP1Q96F81 1524 aa21.9■■□□□ 1.1
SS18-201ENST00000269137 CASKIN1Q8WXD9 1431 aa21.9■■□□□ 1.1
SS18-201ENST00000269137 PCGF6Q9BYE7 350 aa21.89■■□□□ 1.09
SS18-201ENST00000269137 MAP3K1Q13233 1512 aa21.89■■□□□ 1.09
SS18-201ENST00000269137 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
SS18-201ENST00000269137 FYCO1Q9BQS8 1478 aa21.88■■□□□ 1.09
SS18-201ENST00000269137 KIAA0556O60303 1618 aa21.87■■□□□ 1.09
SS18-201ENST00000269137 PCF11O94913 1555 aaKnown RBP21.87■■□□□ 1.09
SS18-201ENST00000269137 CARMIL2Q6F5E8 1435 aa21.82■■□□□ 1.08
SS18-201ENST00000269137 TIAM1Q13009 1591 aa21.8■■□□□ 1.08
SS18-201ENST00000269137 KANK4Q5T7N3 995 aaPredicted RBP21.77■■□□□ 1.08
SS18-201ENST00000269137 SHROOM2Q13796 1616 aa21.76■■□□□ 1.07
SS18-201ENST00000269137 TTBK1Q5TCY1 1321 aaPredicted RBP21.76■■□□□ 1.07
SS18-201ENST00000269137 CFAP43Q8NDM7 1665 aa21.76■■□□□ 1.07
SS18-201ENST00000269137 CLASP1Q7Z460 1538 aa21.75■■□□□ 1.07
SS18-201ENST00000269137 ATP1B4Q9UN42 357 aaPredicted RBP21.73■■□□□ 1.07
SS18-201ENST00000269137 PRG4Q92954 1404 aaPredicted RBP21.72■■□□□ 1.07
SS18-201ENST00000269137 LRRC9Q6ZRR7 1453 aa21.72■■□□□ 1.07
SS18-201ENST00000269137 HECW1Q76N89 1606 aa21.7■■□□□ 1.06
SS18-201ENST00000269137 CCDC18Q5T9S5 1454 aa21.68■■□□□ 1.06
SS18-201ENST00000269137 LRRIQ1Q96JM4 1722 aa21.67■■□□□ 1.06
SS18-201ENST00000269137 RAPGEF6Q8TEU7 1601 aa21.65■■□□□ 1.06
SS18-201ENST00000269137 EPRSP07814 1512 aaKnown RBP21.64■■□□□ 1.05
SS18-201ENST00000269137 PTPRGP23470 1445 aa21.6■■□□□ 1.05
SS18-201ENST00000269137 NUP153P49790 1475 aaKnown RBP21.6■■□□□ 1.05
SS18-201ENST00000269137 PLB1Q6P1J6 1458 aa21.59■■□□□ 1.05
SS18-201ENST00000269137 ABCA8O94911 1581 aa21.58■■□□□ 1.05
SS18-201ENST00000269137 OSCARQ8IYS5 282 aa21.58■■□□□ 1.05
SS18-201ENST00000269137 MTUS2Q5JR59 1369 aa21.57■■□□□ 1.04
SS18-201ENST00000269137 ERCC6L2Q5T890 1561 aa21.56■■□□□ 1.04
SS18-201ENST00000269137 CDK13Q14004 1512 aaKnown RBP21.55■■□□□ 1.04
SS18-201ENST00000269137 EHBP1L1Q8N3D4 1523 aa21.55■■□□□ 1.04
SS18-201ENST00000269137 RRBP1Q9P2E9 1410 aaKnown RBP21.55■■□□□ 1.04
SS18-201ENST00000269137 MAGI3Q5TCQ9 1506 aa21.51■■□□□ 1.03
SS18-201ENST00000269137 PHLDB1Q86UU1 1377 aa21.49■■□□□ 1.03
SS18-201ENST00000269137 UACAQ9BZF9 1416 aa21.48■■□□□ 1.03
SS18-201ENST00000269137 CDK11AQ9UQ88 783 aaPredicted RBP21.48■■□□□ 1.03
SS18-201ENST00000269137 SUPT6HQ7KZ85 1726 aaKnown RBP21.47■■□□□ 1.03
SS18-201ENST00000269137 CCNB3Q8WWL7 1395 aa21.47■■□□□ 1.03
SS18-201ENST00000269137 ARID3CA6NKF2 412 aa21.46■■□□□ 1.03
SS18-201ENST00000269137 NCOA2Q15596 1464 aa21.45■■□□□ 1.02
SS18-201ENST00000269137 ARHGEF11O15085 1522 aa21.45■■□□□ 1.02
SS18-201ENST00000269137 ATP10BO94823 1461 aa21.43■■□□□ 1.02
SS18-201ENST00000269137 ABCC2Q92887 1545 aa21.41■■□□□ 1.02
SS18-201ENST00000269137 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.41■■□□□ 1.02
SS18-201ENST00000269137 HNRNPUL2Q1KMD3 747 aaKnown RBP21.41■■□□□ 1.02
SS18-201ENST00000269137 TROQ12816 1431 aaPredicted RBP21.4■■□□□ 1.02
SS18-201ENST00000269137 UHRF1BP1LA0JNW5 1464 aa21.4■■□□□ 1.02
SS18-201ENST00000269137 MYOM3Q5VTT5 1437 aa21.38■■□□□ 1.01
SS18-201ENST00000269137 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.38■■□□□ 1.01
SS18-201ENST00000269137 FGD6Q6ZV73 1430 aa21.37■■□□□ 1.01
SS18-201ENST00000269137 PLEKHD1A6NEE1 506 aa21.35■■□□□ 1.01
SS18-201ENST00000269137 ADCY10Q96PN6 1610 aa21.33■■□□□ 1
SS18-201ENST00000269137 KDM5BQ9UGL1 1544 aa21.3■■□□□ 1
SS18-201ENST00000269137 MIA2Q96PC5 1412 aa21.29■■□□□ 1
SS18-201ENST00000269137 FAM50AQ14320 339 aaKnown RBP21.27■■□□□ 1
SS18-201ENST00000269137 KIF14Q15058 1648 aa21.25■□□□□ 0.99
SS18-201ENST00000269137 TCOF1Q13428 1488 aaKnown RBP21.25■□□□□ 0.99
SS18-201ENST00000269137 PTPN23Q9H3S7 1636 aa21.24■□□□□ 0.99
SS18-201ENST00000269137 ZCCHC11Q5TAX3 1644 aaKnown RBP21.24■□□□□ 0.99
SS18-201ENST00000269137 ABCC10Q5T3U5 1492 aa21.22■□□□□ 0.99
SS18-201ENST00000269137 HRCP23327 699 aa21.21■□□□□ 0.99
SS18-201ENST00000269137 GPATCH8Q9UKJ3 1502 aaKnown RBP21.2■□□□□ 0.98
SS18-201ENST00000269137 ITSN2Q9NZM3 1697 aa21.19■□□□□ 0.98
SS18-201ENST00000269137 ITGAEP38570 1179 aa21.18■□□□□ 0.98
SS18-201ENST00000269137 CDC42BPAQ5VT25 1732 aa21.14■□□□□ 0.97
SS18-201ENST00000269137 CFDP1Q9UEE9 299 aaPredicted RBP21.13■□□□□ 0.97
SS18-201ENST00000269137 PTPRKQ15262 1439 aa21.1■□□□□ 0.97
SS18-201ENST00000269137 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.09■□□□□ 0.97
SS18-201ENST00000269137 CCER1Q8TC90 406 aaPredicted RBP21.08■□□□□ 0.97
SS18-201ENST00000269137 WDR7Q9Y4E6 1490 aa21.08■□□□□ 0.97
SS18-201ENST00000269137 RIMBP3CA6NJZ7 1639 aa21.08■□□□□ 0.97
SS18-201ENST00000269137 RIMBP3BA6NNM3 1639 aa21.08■□□□□ 0.97
SS18-201ENST00000269137 RIMBP3Q9UFD9 1639 aa21.08■□□□□ 0.97
SS18-201ENST00000269137 SETD5Q9C0A6 1442 aa21.07■□□□□ 0.96
SS18-201ENST00000269137 ZEB1P37275 1124 aaPredicted RBP21.07■□□□□ 0.96
SS18-201ENST00000269137 CAMSAP2Q08AD1 1489 aa21.07■□□□□ 0.96
SS18-201ENST00000269137 ZNF644Q9H582 1327 aaPredicted RBP21.07■□□□□ 0.96
SS18-201ENST00000269137 NPM1P06748 294 aaKnown RBP eCLIP21.06■□□□□ 0.96
SS18-201ENST00000269137 TTC37Q6PGP7 1564 aa21.06■□□□□ 0.96
SS18-201ENST00000269137 PREX2Q70Z35 1606 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms