RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 GRIN2AQ12879 1464 aa36.19■■■■□ 3.38
SMARCB1-201ENST00000263121 ARAP1Q96P48 1450 aa36.18■■■■□ 3.38
SMARCB1-201ENST00000263121 VPS8Q8N3P4 1428 aa36.13■■■■□ 3.37
SMARCB1-201ENST00000263121 EFCAB5A4FU69 1503 aa36.07■■■■□ 3.37
SMARCB1-201ENST00000263121 CHMP7Q8WUX9 453 aaPredicted RBP36.05■■■■□ 3.36
SMARCB1-201ENST00000263121 IQGAP2Q13576 1575 aa36.04■■■■□ 3.36
SMARCB1-201ENST00000263121 KIAA0586Q9BVV6 1533 aa35.98■■■■□ 3.35
SMARCB1-201ENST00000263121 SAMD9Q5K651 1589 aa35.98■■■■□ 3.35
SMARCB1-201ENST00000263121 CEP170Q5SW79 1584 aa35.97■■■■□ 3.35
SMARCB1-201ENST00000263121 NUP160Q12769 1436 aa35.95■■■■□ 3.35
SMARCB1-201ENST00000263121 FBLN2P98095 1184 aa35.93■■■■□ 3.34
SMARCB1-201ENST00000263121 UGGT2Q9NYU1 1516 aa35.89■■■■□ 3.34
SMARCB1-201ENST00000263121 CHD1O14646 1710 aa35.88■■■■□ 3.33
SMARCB1-201ENST00000263121 FHOD3Q2V2M9 1422 aa35.85■■■■□ 3.33
SMARCB1-201ENST00000263121 P3H3Q8IVL6 736 aa35.81■■■■□ 3.32
SMARCB1-201ENST00000263121 PPARGC1BQ86YN6 1023 aaKnown RBP35.71■■■■□ 3.31
SMARCB1-201ENST00000263121 FMN1Q68DA7 1419 aa35.7■■■■□ 3.31
SMARCB1-201ENST00000263121 DISP1Q96F81 1524 aa35.7■■■■□ 3.3
SMARCB1-201ENST00000263121 KIAA0556O60303 1618 aa35.69■■■■□ 3.3
SMARCB1-201ENST00000263121 PCF11O94913 1555 aaKnown RBP35.68■■■■□ 3.3
SMARCB1-201ENST00000263121 APLP2Q06481 763 aa35.65■■■■□ 3.3
SMARCB1-201ENST00000263121 TRIM26Q12899 539 aaPredicted RBP35.64■■■■□ 3.3
SMARCB1-201ENST00000263121 CASKIN1Q8WXD9 1431 aa35.63■■■■□ 3.29
SMARCB1-201ENST00000263121 FYCO1Q9BQS8 1478 aa35.62■■■■□ 3.29
SMARCB1-201ENST00000263121 JPH4Q96JJ6 628 aa35.59■■■■□ 3.29
SMARCB1-201ENST00000263121 MAP3K1Q13233 1512 aa35.58■■■■□ 3.29
SMARCB1-201ENST00000263121 TIAM1Q13009 1591 aa35.52■■■■□ 3.28
SMARCB1-201ENST00000263121 PCGF6Q9BYE7 350 aa35.52■■■■□ 3.28
SMARCB1-201ENST00000263121 SHROOM2Q13796 1616 aa35.51■■■■□ 3.28
SMARCB1-201ENST00000263121 CARMIL2Q6F5E8 1435 aa35.5■■■■□ 3.27
SMARCB1-201ENST00000263121 CLASP1Q7Z460 1538 aa35.5■■■■□ 3.27
SMARCB1-201ENST00000263121 CFAP43Q8NDM7 1665 aa35.49■■■■□ 3.27
SMARCB1-201ENST00000263121 TTBK1Q5TCY1 1321 aaPredicted RBP35.45■■■■□ 3.27
SMARCB1-201ENST00000263121 KANK4Q5T7N3 995 aaPredicted RBP35.42■■■■□ 3.26
SMARCB1-201ENST00000263121 PRG4Q92954 1404 aaPredicted RBP35.41■■■■□ 3.26
SMARCB1-201ENST00000263121 LRRIQ1Q96JM4 1722 aa35.39■■■■□ 3.26
SMARCB1-201ENST00000263121 HECW1Q76N89 1606 aa35.38■■■■□ 3.25
SMARCB1-201ENST00000263121 ATP1B4Q9UN42 357 aaPredicted RBP35.37■■■■□ 3.25
SMARCB1-201ENST00000263121 LRRC9Q6ZRR7 1453 aa35.34■■■■□ 3.25
SMARCB1-201ENST00000263121 RAPGEF6Q8TEU7 1601 aa35.3■■■■□ 3.24
SMARCB1-201ENST00000263121 CCDC18Q5T9S5 1454 aa35.29■■■■□ 3.24
SMARCB1-201ENST00000263121 EPRSP07814 1512 aaKnown RBP35.24■■■■□ 3.23
SMARCB1-201ENST00000263121 ERCC6L2Q5T890 1561 aa35.22■■■■□ 3.23
SMARCB1-201ENST00000263121 NUP153P49790 1475 aaKnown RBP35.21■■■■□ 3.23
SMARCB1-201ENST00000263121 PLB1Q6P1J6 1458 aa35.21■■■■□ 3.23
SMARCB1-201ENST00000263121 ABCA8O94911 1581 aa35.19■■■■□ 3.22
SMARCB1-201ENST00000263121 PTPRGP23470 1445 aa35.16■■■■□ 3.22
SMARCB1-201ENST00000263121 OSCARQ8IYS5 282 aa35.14■■■■□ 3.22
SMARCB1-201ENST00000263121 CDK13Q14004 1512 aaKnown RBP35.14■■■■□ 3.22
SMARCB1-201ENST00000263121 EHBP1L1Q8N3D4 1523 aa35.1■■■■□ 3.21
SMARCB1-201ENST00000263121 MTUS2Q5JR59 1369 aa35.09■■■■□ 3.21
SMARCB1-201ENST00000263121 MAGI3Q5TCQ9 1506 aa35.09■■■■□ 3.21
SMARCB1-201ENST00000263121 RRBP1Q9P2E9 1410 aaKnown RBP35.03■■■■□ 3.2
SMARCB1-201ENST00000263121 PHLDB1Q86UU1 1377 aa34.99■■■■□ 3.19
SMARCB1-201ENST00000263121 ARID3CA6NKF2 412 aa34.98■■■■□ 3.19
SMARCB1-201ENST00000263121 SUPT6HQ7KZ85 1726 aaKnown RBP34.98■■■■□ 3.19
SMARCB1-201ENST00000263121 UACAQ9BZF9 1416 aa34.98■■■■□ 3.19
SMARCB1-201ENST00000263121 ARHGEF11O15085 1522 aa34.93■■■■□ 3.18
SMARCB1-201ENST00000263121 NCOA2Q15596 1464 aa34.93■■■■□ 3.18
SMARCB1-201ENST00000263121 ATP10BO94823 1461 aa34.92■■■■□ 3.18
SMARCB1-201ENST00000263121 ABCC2Q92887 1545 aa34.91■■■■□ 3.18
SMARCB1-201ENST00000263121 CCNB3Q8WWL7 1395 aa34.9■■■■□ 3.18
SMARCB1-201ENST00000263121 CDK11AQ9UQ88 783 aaPredicted RBP34.88■■■■□ 3.17
SMARCB1-201ENST00000263121 UHRF1BP1LA0JNW5 1464 aa34.85■■■■□ 3.17
SMARCB1-201ENST00000263121 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.85■■■■□ 3.17
SMARCB1-201ENST00000263121 HNRNPUL2Q1KMD3 747 aaKnown RBP34.85■■■■□ 3.17
SMARCB1-201ENST00000263121 TROQ12816 1431 aaPredicted RBP34.84■■■■□ 3.17
SMARCB1-201ENST00000263121 MYOM3Q5VTT5 1437 aa34.79■■■■□ 3.16
SMARCB1-201ENST00000263121 ADCY10Q96PN6 1610 aa34.78■■■■□ 3.16
SMARCB1-201ENST00000263121 FGD6Q6ZV73 1430 aa34.77■■■■□ 3.16
SMARCB1-201ENST00000263121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.71■■■■□ 3.157e-16■■■■■ 28.1
SMARCB1-201ENST00000263121 KDM5BQ9UGL1 1544 aa34.7■■■■□ 3.15
SMARCB1-201ENST00000263121 PLEKHD1A6NEE1 506 aa34.7■■■■□ 3.14
SMARCB1-201ENST00000263121 KIF14Q15058 1648 aa34.69■■■■□ 3.14
SMARCB1-201ENST00000263121 ZCCHC11Q5TAX3 1644 aaKnown RBP34.67■■■■□ 3.14
SMARCB1-201ENST00000263121 MIA2Q96PC5 1412 aa34.62■■■■□ 3.13
SMARCB1-201ENST00000263121 PTPN23Q9H3S7 1636 aa34.61■■■■□ 3.13
SMARCB1-201ENST00000263121 FAM50AQ14320 339 aaKnown RBP34.6■■■■□ 3.13
SMARCB1-201ENST00000263121 TCOF1Q13428 1488 aaKnown RBP34.59■■■■□ 3.13
SMARCB1-201ENST00000263121 ABCC10Q5T3U5 1492 aa34.58■■■■□ 3.13
SMARCB1-201ENST00000263121 ITSN2Q9NZM3 1697 aa34.55■■■■□ 3.12
SMARCB1-201ENST00000263121 GPATCH8Q9UKJ3 1502 aaKnown RBP34.52■■■■□ 3.12
SMARCB1-201ENST00000263121 CDC42BPAQ5VT25 1732 aa34.47■■■■□ 3.11
SMARCB1-201ENST00000263121 ITGAEP38570 1179 aa34.47■■■■□ 3.11
SMARCB1-201ENST00000263121 RIMBP3CA6NJZ7 1639 aa34.46■■■■□ 3.11
SMARCB1-201ENST00000263121 RIMBP3BA6NNM3 1639 aa34.46■■■■□ 3.11
SMARCB1-201ENST00000263121 RIMBP3Q9UFD9 1639 aa34.46■■■■□ 3.11
SMARCB1-201ENST00000263121 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.4■■■■□ 3.13e-6■■■□□ 15.2
SMARCB1-201ENST00000263121 TTC37Q6PGP7 1564 aa34.38■■■■□ 3.09
SMARCB1-201ENST00000263121 HRCP23327 699 aa34.38■■■■□ 3.09
SMARCB1-201ENST00000263121 CFDP1Q9UEE9 299 aaPredicted RBP34.37■■■■□ 3.09
SMARCB1-201ENST00000263121 WDR7Q9Y4E6 1490 aa34.37■■■■□ 3.09
SMARCB1-201ENST00000263121 PTPRKQ15262 1439 aa34.36■■■■□ 3.09
SMARCB1-201ENST00000263121 PREX2Q70Z35 1606 aa34.35■■■■□ 3.09
SMARCB1-201ENST00000263121 CAMSAP2Q08AD1 1489 aa34.34■■■■□ 3.09
SMARCB1-201ENST00000263121 CDC42BPBQ9Y5S2 1711 aa34.3■■■■□ 3.08
SMARCB1-201ENST00000263121 ZNF644Q9H582 1327 aaPredicted RBP34.3■■■■□ 3.08
SMARCB1-201ENST00000263121 DNMT1P26358 1616 aaKnown RBP34.29■■■■□ 3.08
SMARCB1-201ENST00000263121 ASXL2Q76L83 1435 aa34.29■■■■□ 3.08
SMARCB1-201ENST00000263121 KCNH8Q96L42 1107 aa34.28■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms