RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 GAPVD1Q14C86 1478 aa19.61■□□□□ 0.73
SPTLC1-201ENST00000262554 TARBP1Q13395 1621 aaKnown RBP19.59■□□□□ 0.73
SPTLC1-201ENST00000262554 TDRD9Q8NDG6 1382 aaKnown RBP19.59■□□□□ 0.73
SPTLC1-201ENST00000262554 MRC2Q9UBG0 1479 aa19.58■□□□□ 0.72
SPTLC1-201ENST00000262554 EFCAB5A4FU69 1503 aa19.55■□□□□ 0.72
SPTLC1-201ENST00000262554 KANK4Q5T7N3 995 aaPredicted RBP19.54■□□□□ 0.72
SPTLC1-201ENST00000262554 FHAD1B1AJZ9 1412 aa19.54■□□□□ 0.72
SPTLC1-201ENST00000262554 HNRNPUL2Q1KMD3 747 aaKnown RBP19.54■□□□□ 0.72
SPTLC1-201ENST00000262554 MAP3K1Q13233 1512 aa19.53■□□□□ 0.72
SPTLC1-201ENST00000262554 TIAM1Q13009 1591 aa19.5■□□□□ 0.71
SPTLC1-201ENST00000262554 PBRM1Q86U86 1689 aa19.5■□□□□ 0.71
SPTLC1-201ENST00000262554 PCF11O94913 1555 aaKnown RBP19.45■□□□□ 0.7
SPTLC1-201ENST00000262554 RRBP1Q9P2E9 1410 aaKnown RBP19.45■□□□□ 0.7
SPTLC1-201ENST00000262554 WDR62O43379 1518 aa19.45■□□□□ 0.7
SPTLC1-201ENST00000262554 CFAP43Q8NDM7 1665 aa19.45■□□□□ 0.7
SPTLC1-201ENST00000262554 P3H3Q8IVL6 736 aa19.44■□□□□ 0.7
SPTLC1-201ENST00000262554 FHOD3Q2V2M9 1422 aa19.44■□□□□ 0.7
SPTLC1-201ENST00000262554 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
SPTLC1-201ENST00000262554 AQRO60306 1485 aaKnown RBP eCLIP19.41■□□□□ 0.73e-7■■■■■ 32.6
SPTLC1-201ENST00000262554 IFT140Q96RY7 1462 aa19.41■□□□□ 0.7
SPTLC1-201ENST00000262554 SAMD9Q5K651 1589 aa19.4■□□□□ 0.7
SPTLC1-201ENST00000262554 LRRC9Q6ZRR7 1453 aa19.4■□□□□ 0.7
SPTLC1-201ENST00000262554 FMN1Q68DA7 1419 aa19.38■□□□□ 0.69
SPTLC1-201ENST00000262554 CASKIN1Q8WXD9 1431 aa19.38■□□□□ 0.69
SPTLC1-201ENST00000262554 ADAMTS12P58397 1594 aa19.38■□□□□ 0.69
SPTLC1-201ENST00000262554 GRIN2BQ13224 1484 aa19.37■□□□□ 0.69
SPTLC1-201ENST00000262554 CCNB3Q8WWL7 1395 aa19.37■□□□□ 0.69
SPTLC1-201ENST00000262554 ERCC6Q03468 1493 aa19.36■□□□□ 0.69
SPTLC1-201ENST00000262554 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.68
SPTLC1-201ENST00000262554 PIAS4Q8N2W9 510 aaPredicted RBP19.32■□□□□ 0.68
SPTLC1-201ENST00000262554 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
SPTLC1-201ENST00000262554 SNAPC4Q5SXM2 1469 aa19.3■□□□□ 0.68
SPTLC1-201ENST00000262554 THOC2Q8NI27 1593 aaKnown RBP19.29■□□□□ 0.68
SPTLC1-201ENST00000262554 IQGAP2Q13576 1575 aa19.28■□□□□ 0.68
SPTLC1-201ENST00000262554 EIF4G3O43432 1585 aaKnown RBP19.26■□□□□ 0.67
SPTLC1-201ENST00000262554 PHLDB1Q86UU1 1377 aa19.24■□□□□ 0.67
SPTLC1-201ENST00000262554 LRRIQ1Q96JM4 1722 aa19.21■□□□□ 0.67
SPTLC1-201ENST00000262554 CLSPNQ9HAW4 1339 aa19.21■□□□□ 0.67
SPTLC1-201ENST00000262554 DHX57Q6P158 1386 aaKnown RBP19.18■□□□□ 0.66
SPTLC1-201ENST00000262554 ITGAEP38570 1179 aa19.18■□□□□ 0.66
SPTLC1-201ENST00000262554 UGGT2Q9NYU1 1516 aa19.17■□□□□ 0.66
SPTLC1-201ENST00000262554 MTUS2Q5JR59 1369 aa19.16■□□□□ 0.66
SPTLC1-201ENST00000262554 GRIN2AQ12879 1464 aa19.15■□□□□ 0.66
SPTLC1-201ENST00000262554 MAGI1Q96QZ7 1491 aaPredicted RBP19.15■□□□□ 0.66
SPTLC1-201ENST00000262554 KIAA0586Q9BVV6 1533 aa19.15■□□□□ 0.66
SPTLC1-201ENST00000262554 HECW1Q76N89 1606 aa19.14■□□□□ 0.66
SPTLC1-201ENST00000262554 CCDC18Q5T9S5 1454 aa19.14■□□□□ 0.65
SPTLC1-201ENST00000262554 FAM50AQ14320 339 aaKnown RBP19.14■□□□□ 0.65
SPTLC1-201ENST00000262554 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.13■□□□□ 0.65
SPTLC1-201ENST00000262554 EHBP1L1Q8N3D4 1523 aa19.12■□□□□ 0.65
SPTLC1-201ENST00000262554 SUPT6HQ7KZ85 1726 aaKnown RBP19.12■□□□□ 0.65
SPTLC1-201ENST00000262554 FGD6Q6ZV73 1430 aa19.09■□□□□ 0.65
SPTLC1-201ENST00000262554 SYNJ2O15056 1496 aa19.09■□□□□ 0.65
SPTLC1-201ENST00000262554 RAB3GAP2Q9H2M9 1393 aa19.08■□□□□ 0.64
SPTLC1-201ENST00000262554 SETD5Q9C0A6 1442 aa19.08■□□□□ 0.64
SPTLC1-201ENST00000262554 KIAA0556O60303 1618 aa19.07■□□□□ 0.64
SPTLC1-201ENST00000262554 NCOA2Q15596 1464 aa19.06■□□□□ 0.64
SPTLC1-201ENST00000262554 ZNF316A6NFI3 1004 aaPredicted RBP19.05■□□□□ 0.64
SPTLC1-201ENST00000262554 CHMP7Q8WUX9 453 aaPredicted RBP19.05■□□□□ 0.64
SPTLC1-201ENST00000262554 EPRSP07814 1512 aaKnown RBP19.04■□□□□ 0.64
SPTLC1-201ENST00000262554 DISP1Q96F81 1524 aa19.04■□□□□ 0.64
SPTLC1-201ENST00000262554 MYOM3Q5VTT5 1437 aa19.03■□□□□ 0.64
SPTLC1-201ENST00000262554 DIEXFQ68CQ4 756 aaKnown RBP19.02■□□□□ 0.64
SPTLC1-201ENST00000262554 CEP170Q5SW79 1584 aa19.02■□□□□ 0.64
SPTLC1-201ENST00000262554 MAGI3Q5TCQ9 1506 aa19.01■□□□□ 0.63
SPTLC1-201ENST00000262554 ARHGEF11O15085 1522 aa19.01■□□□□ 0.63
SPTLC1-201ENST00000262554 CDK13Q14004 1512 aaKnown RBP18.98■□□□□ 0.63
SPTLC1-201ENST00000262554 RAPGEF6Q8TEU7 1601 aa18.97■□□□□ 0.63
SPTLC1-201ENST00000262554 FBLN2P98095 1184 aa18.97■□□□□ 0.63
SPTLC1-201ENST00000262554 PTPN23Q9H3S7 1636 aa18.96■□□□□ 0.63
SPTLC1-201ENST00000262554 NUP160Q12769 1436 aa18.96■□□□□ 0.63
SPTLC1-201ENST00000262554 KCNA4P22459 653 aa18.94■□□□□ 0.62
SPTLC1-201ENST00000262554 MAPKBP1O60336 1514 aa18.93■□□□□ 0.62
SPTLC1-201ENST00000262554 CARMIL2Q6F5E8 1435 aa18.91■□□□□ 0.62
SPTLC1-201ENST00000262554 NUP153P49790 1475 aaKnown RBP18.9■□□□□ 0.62
SPTLC1-201ENST00000262554 TCOF1Q13428 1488 aaKnown RBP18.9■□□□□ 0.62
SPTLC1-201ENST00000262554 HFM1A2PYH4 1435 aa18.88■□□□□ 0.61
SPTLC1-201ENST00000262554 MIA2Q96PC5 1412 aa18.87■□□□□ 0.61
SPTLC1-201ENST00000262554 ARID3CA6NKF2 412 aa18.87■□□□□ 0.61
SPTLC1-201ENST00000262554 JPH4Q96JJ6 628 aa18.87■□□□□ 0.61
SPTLC1-201ENST00000262554 PTPRKQ15262 1439 aa18.87■□□□□ 0.61
SPTLC1-201ENST00000262554 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
SPTLC1-201ENST00000262554 PLB1Q6P1J6 1458 aa18.81■□□□□ 0.6
SPTLC1-201ENST00000262554 NAIPQ13075 1403 aa18.81■□□□□ 0.6
SPTLC1-201ENST00000262554 GCC2Q8IWJ2 1684 aa18.79■□□□□ 0.6
SPTLC1-201ENST00000262554 CHD1O14646 1710 aa18.78■□□□□ 0.6
SPTLC1-201ENST00000262554 UACAQ9BZF9 1416 aa18.78■□□□□ 0.6
SPTLC1-201ENST00000262554 PPP4R3CPQ6ZMV5 832 aa18.77■□□□□ 0.6
SPTLC1-201ENST00000262554 TROQ12816 1431 aaPredicted RBP18.77■□□□□ 0.6
SPTLC1-201ENST00000262554 AKNAQ7Z591 1439 aa18.77■□□□□ 0.6
SPTLC1-201ENST00000262554 ADCY10Q96PN6 1610 aa18.75■□□□□ 0.59
SPTLC1-201ENST00000262554 ABCA8O94911 1581 aa18.75■□□□□ 0.59
SPTLC1-201ENST00000262554 TIMELESSQ9UNS1 1208 aa18.75■□□□□ 0.59
SPTLC1-201ENST00000262554 ITSN2Q9NZM3 1697 aa18.74■□□□□ 0.59
SPTLC1-201ENST00000262554 PRG4Q92954 1404 aaPredicted RBP18.73■□□□□ 0.59
SPTLC1-201ENST00000262554 SIN3AQ96ST3 1273 aa18.73■□□□□ 0.59
SPTLC1-201ENST00000262554 NEUROD1Q13562 356 aa18.72■□□□□ 0.59
SPTLC1-201ENST00000262554 DNMT1P26358 1616 aaKnown RBP18.71■□□□□ 0.59
SPTLC1-201ENST00000262554 CHIC2Q9UKJ5 165 aa18.71■□□□□ 0.59
SPTLC1-201ENST00000262554 RRP7BPQ9NSQ0 103 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms