RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
SPTLC1-201ENST00000262554 AEBP2Q6ZN18 517 aaPredicted RBP26.04■■□□□ 1.76
SPTLC1-201ENST00000262554 CHIC1Q5VXU3 224 aa25.89■■□□□ 1.74
SPTLC1-201ENST00000262554 CCDC180Q9P1Z9 1646 aa24.32■■□□□ 1.48
SPTLC1-201ENST00000262554 ZCCHC6Q5VYS8 1495 aaKnown RBP23.72■■□□□ 1.39
SPTLC1-201ENST00000262554 SHROOM4Q9ULL8 1493 aa23.36■■□□□ 1.33
SPTLC1-201ENST00000262554 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
SPTLC1-201ENST00000262554 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
SPTLC1-201ENST00000262554 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
SPTLC1-201ENST00000262554 MYO15BQ96JP2 1530 aa22.77■■□□□ 1.24
SPTLC1-201ENST00000262554 SUPT5HO00267 1087 aaKnown RBP22.71■■□□□ 1.23
SPTLC1-201ENST00000262554 ABCC9O60706 1549 aa22.63■■□□□ 1.21
SPTLC1-201ENST00000262554 NACADO15069 1562 aa22.54■■□□□ 1.2
SPTLC1-201ENST00000262554 SCRIBQ14160 1630 aa22.48■■□□□ 1.19
SPTLC1-201ENST00000262554 RB1CC1Q8TDY2 1594 aa22.26■■□□□ 1.15
SPTLC1-201ENST00000262554 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
SPTLC1-201ENST00000262554 SENP3Q9H4L4 574 aaPredicted RBP21.98■■□□□ 1.11
SPTLC1-201ENST00000262554 UNC13AQ9UPW8 1703 aa21.87■■□□□ 1.09
SPTLC1-201ENST00000262554 CECR2Q9BXF3 1484 aa21.84■■□□□ 1.09
SPTLC1-201ENST00000262554 MROH2BQ7Z745 1585 aa21.77■■□□□ 1.08
SPTLC1-201ENST00000262554 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
SPTLC1-201ENST00000262554 WIZO95785 1651 aa21.65■■□□□ 1.06
SPTLC1-201ENST00000262554 BICRAQ9NZM4 1560 aa21.56■■□□□ 1.04
SPTLC1-201ENST00000262554 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
SPTLC1-201ENST00000262554 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.02
SPTLC1-201ENST00000262554 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
SPTLC1-201ENST00000262554 TRIM41Q8WV44 630 aa21.3■■□□□ 1
SPTLC1-201ENST00000262554 PLPPR3Q6T4P5 718 aa21.24■□□□□ 0.99
SPTLC1-201ENST00000262554 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
SPTLC1-201ENST00000262554 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
SPTLC1-201ENST00000262554 EIF4G1Q04637 1599 aaKnown RBP21.21■□□□□ 0.99
SPTLC1-201ENST00000262554 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
SPTLC1-201ENST00000262554 LOC105371045A0A1W2PR82 267 aa21.15■□□□□ 0.98
SPTLC1-201ENST00000262554 ATAD2BQ9ULI0 1458 aa21.06■□□□□ 0.96
SPTLC1-201ENST00000262554 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
SPTLC1-201ENST00000262554 FAM9AQ8IZU1 332 aaPredicted RBP20.94■□□□□ 0.94
SPTLC1-201ENST00000262554 ABCC8Q09428 1581 aa20.93■□□□□ 0.94
SPTLC1-201ENST00000262554 HMGXB3Q12766 1538 aa20.81■□□□□ 0.92
SPTLC1-201ENST00000262554 NCAPD3P42695 1498 aa20.78■□□□□ 0.92
SPTLC1-201ENST00000262554 WRNQ14191 1432 aaPredicted RBP eCLIP20.72■□□□□ 0.91
SPTLC1-201ENST00000262554 PCGF6Q9BYE7 350 aa20.69■□□□□ 0.9
SPTLC1-201ENST00000262554 EHMT2Q96KQ7 1210 aa20.67■□□□□ 0.9
SPTLC1-201ENST00000262554 EEA1Q15075 1411 aa20.65■□□□□ 0.9
SPTLC1-201ENST00000262554 SYNJ1O43426 1573 aa20.62■□□□□ 0.89
SPTLC1-201ENST00000262554 SOGA1O94964 1423 aa20.61■□□□□ 0.89
SPTLC1-201ENST00000262554 TRIM26Q12899 539 aaPredicted RBP20.55■□□□□ 0.88
SPTLC1-201ENST00000262554 CSRNP3Q8WYN3 585 aa20.52■□□□□ 0.87
SPTLC1-201ENST00000262554 RUSC2Q8N2Y8 1516 aa20.51■□□□□ 0.87
SPTLC1-201ENST00000262554 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
SPTLC1-201ENST00000262554 CC2D2AQ9P2K1 1620 aa20.48■□□□□ 0.87
SPTLC1-201ENST00000262554 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
SPTLC1-201ENST00000262554 CFTRP13569 1480 aa20.46■□□□□ 0.87
SPTLC1-201ENST00000262554 PRDM2Q13029 1718 aa20.45■□□□□ 0.86
SPTLC1-201ENST00000262554 HRCP23327 699 aa20.44■□□□□ 0.86
SPTLC1-201ENST00000262554 TNIKQ9UKE5 1360 aa20.42■□□□□ 0.86
SPTLC1-201ENST00000262554 GOLGA3Q08378 1498 aa20.41■□□□□ 0.86
SPTLC1-201ENST00000262554 KIF21BO75037 1637 aa20.38■□□□□ 0.85
SPTLC1-201ENST00000262554 CEP162Q5TB80 1403 aa20.36■□□□□ 0.85
SPTLC1-201ENST00000262554 FOXD1Q16676 465 aa20.36■□□□□ 0.85
SPTLC1-201ENST00000262554 CEP164Q9UPV0 1460 aa20.36■□□□□ 0.85
SPTLC1-201ENST00000262554 UBTFP17480 764 aaKnown RBP20.33■□□□□ 0.85
SPTLC1-201ENST00000262554 CUX1P39880 1505 aa20.33■□□□□ 0.85
SPTLC1-201ENST00000262554 CADPSQ9ULU8 1353 aa20.3■□□□□ 0.84
SPTLC1-201ENST00000262554 RAPGEF2Q9Y4G8 1499 aa20.17■□□□□ 0.82
SPTLC1-201ENST00000262554 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
SPTLC1-201ENST00000262554 PPARGC1BQ86YN6 1023 aaKnown RBP20.15■□□□□ 0.82
SPTLC1-201ENST00000262554 ERICH3Q5RHP9 1530 aa20.14■□□□□ 0.82
SPTLC1-201ENST00000262554 PRXQ9BXM0 1461 aa20.11■□□□□ 0.81
SPTLC1-201ENST00000262554 FANCD2Q9BXW9 1451 aa20.1■□□□□ 0.81
SPTLC1-201ENST00000262554 CLIP1P30622 1438 aa20.1■□□□□ 0.81
SPTLC1-201ENST00000262554 FGD5Q6ZNL6 1462 aa20.04■□□□□ 0.8
SPTLC1-201ENST00000262554 LAMC3Q9Y6N6 1575 aa20.03■□□□□ 0.8
SPTLC1-201ENST00000262554 CUX2O14529 1486 aa20.01■□□□□ 0.79
SPTLC1-201ENST00000262554 NESP48681 1621 aa20.01■□□□□ 0.79
SPTLC1-201ENST00000262554 PPP6R1Q9UPN7 881 aa20.01■□□□□ 0.79
SPTLC1-201ENST00000262554 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
SPTLC1-201ENST00000262554 ADRA2BP18089 450 aa19.99■□□□□ 0.79
SPTLC1-201ENST00000262554 VPS8Q8N3P4 1428 aa19.98■□□□□ 0.79
SPTLC1-201ENST00000262554 ZEB1P37275 1124 aaPredicted RBP19.97■□□□□ 0.79
SPTLC1-201ENST00000262554 TOPBP1Q92547 1522 aa19.93■□□□□ 0.78
SPTLC1-201ENST00000262554 TTBK1Q5TCY1 1321 aaPredicted RBP19.91■□□□□ 0.78
SPTLC1-201ENST00000262554 IGF1RP08069 1367 aa19.91■□□□□ 0.78
SPTLC1-201ENST00000262554 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
SPTLC1-201ENST00000262554 POLA1P09884 1462 aaPredicted RBP19.87■□□□□ 0.77
SPTLC1-201ENST00000262554 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
SPTLC1-201ENST00000262554 ABCA10Q8WWZ4 1543 aa19.85■□□□□ 0.77
SPTLC1-201ENST00000262554 APLP2Q06481 763 aa19.85■□□□□ 0.77
SPTLC1-201ENST00000262554 CARMIL1Q5VZK9 1371 aa19.84■□□□□ 0.77
SPTLC1-201ENST00000262554 ARAP1Q96P48 1450 aa19.83■□□□□ 0.77
SPTLC1-201ENST00000262554 RAD54L2Q9Y4B4 1467 aa19.82■□□□□ 0.76
SPTLC1-201ENST00000262554 URB2Q14146 1524 aaKnown RBP19.82■□□□□ 0.76
SPTLC1-201ENST00000262554 DNAJC5BQ9UF47 199 aa19.8■□□□□ 0.76
SPTLC1-201ENST00000262554 KIF21AQ7Z4S6 1674 aa19.79■□□□□ 0.76
SPTLC1-201ENST00000262554 WDR97A6NE52 1622 aa19.77■□□□□ 0.76
SPTLC1-201ENST00000262554 CUL7Q14999 1698 aa19.74■□□□□ 0.75
SPTLC1-201ENST00000262554 ARHGAP35Q9NRY4 1499 aa19.74■□□□□ 0.75
SPTLC1-201ENST00000262554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.69■□□□□ 0.74
SPTLC1-201ENST00000262554 CCER1Q8TC90 406 aaPredicted RBP19.69■□□□□ 0.74
SPTLC1-201ENST00000262554 ABCA5Q8WWZ7 1642 aa19.67■□□□□ 0.74
SPTLC1-201ENST00000262554 CTTNBP2Q8WZ74 1663 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms