RNA–Protein interactions for RNA: ENST00000434192.2

GTF2A1-202, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 1 (best) BASIC

Gene GTF2A1, Length 1,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-202ENST00000434192 AEBP2Q6ZN18 517 aaPredicted RBP26.21■■□□□ 1.79
GTF2A1-202ENST00000434192 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
GTF2A1-202ENST00000434192 SENP3Q9H4L4 574 aaPredicted RBP22.26■■□□□ 1.15
GTF2A1-202ENST00000434192 PHF23Q9BUL5 403 aaPredicted RBP22.18■■□□□ 1.14
GTF2A1-202ENST00000434192 FOXD1Q16676 465 aa20.73■□□□□ 0.91
GTF2A1-202ENST00000434192 PLPPR3Q6T4P5 718 aa20.33■□□□□ 0.85
GTF2A1-202ENST00000434192 PPP6R1Q9UPN7 881 aa19.7■□□□□ 0.74
GTF2A1-202ENST00000434192 ADRA2BP18089 450 aa19.68■□□□□ 0.74
GTF2A1-202ENST00000434192 PIAS4Q8N2W9 510 aaPredicted RBP19.49■□□□□ 0.71
GTF2A1-202ENST00000434192 MSH5O43196 834 aa19.22■□□□□ 0.67
GTF2A1-202ENST00000434192 POTEDQ86YR6 584 aa18.16■□□□□ 0.5
GTF2A1-202ENST00000434192 MAPK8IP2Q13387 824 aaPredicted RBP17.97■□□□□ 0.47
GTF2A1-202ENST00000434192 SCAF1Q9H7N4 1312 aaKnown RBP17.94■□□□□ 0.46
GTF2A1-202ENST00000434192 PPP4R3CPQ6ZMV5 832 aa17.89■□□□□ 0.45
GTF2A1-202ENST00000434192 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.43
GTF2A1-202ENST00000434192 CNKSR2Q8WXI2 1034 aa17.44■□□□□ 0.38
GTF2A1-202ENST00000434192 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
GTF2A1-202ENST00000434192 HOXD11P31277 338 aaPredicted RBP17.19■□□□□ 0.34
GTF2A1-202ENST00000434192 RNF216Q9NWF9 866 aaPredicted RBP17.17■□□□□ 0.34
GTF2A1-202ENST00000434192 KCNA4P22459 653 aa17.1■□□□□ 0.33
GTF2A1-202ENST00000434192 DCAF8L1A6NGE4 600 aa17.07■□□□□ 0.32
GTF2A1-202ENST00000434192 NPM3O75607 178 aaKnown RBP17.07■□□□□ 0.32
GTF2A1-202ENST00000434192 DNAJC5BQ9UF47 199 aa16.49■□□□□ 0.23
GTF2A1-202ENST00000434192 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.221e-7■■□□□ 12.8
GTF2A1-202ENST00000434192 RNF39Q9H2S5 420 aa16.45■□□□□ 0.22
GTF2A1-202ENST00000434192 CACNB1Q02641 598 aaPredicted RBP16.32■□□□□ 0.2
GTF2A1-202ENST00000434192 C1QBPQ07021 282 aaKnown RBP16.22■□□□□ 0.19
GTF2A1-202ENST00000434192 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
GTF2A1-202ENST00000434192 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
GTF2A1-202ENST00000434192 U3KPZ7 1027 aaPredicted RBP16.12■□□□□ 0.17
GTF2A1-202ENST00000434192 NISCHQ9Y2I1 1504 aa16.06■□□□□ 0.16
GTF2A1-202ENST00000434192 SPINK5Q9NQ38 1064 aaPredicted RBP15.81■□□□□ 0.12
GTF2A1-202ENST00000434192 FOXD4L1Q9NU39 408 aa15.81■□□□□ 0.12
GTF2A1-202ENST00000434192 CAPN15O75808 1086 aa15.77■□□□□ 0.12
GTF2A1-202ENST00000434192 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.76■□□□□ 0.11
GTF2A1-202ENST00000434192 HNRNPUL2Q1KMD3 747 aaKnown RBP15.76■□□□□ 0.11
GTF2A1-202ENST00000434192 MYCNP04198 464 aaPredicted RBP15.75■□□□□ 0.11
GTF2A1-202ENST00000434192 ZBTB22O15209 634 aa15.72■□□□□ 0.11
GTF2A1-202ENST00000434192 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
GTF2A1-202ENST00000434192 APLP2Q06481 763 aa15.67■□□□□ 0.1
GTF2A1-202ENST00000434192 TRHP20396 242 aaPredicted RBP15.62■□□□□ 0.09
GTF2A1-202ENST00000434192 DSG3P32926 999 aa15.55■□□□□ 0.08
GTF2A1-202ENST00000434192 ZNF219Q9P2Y4 722 aaPredicted RBP15.54■□□□□ 0.08
GTF2A1-202ENST00000434192 ABCB7O75027 752 aa15.45■□□□□ 0.06
GTF2A1-202ENST00000434192 ATF5Q9Y2D1 282 aaPredicted RBP15.41■□□□□ 0.06
GTF2A1-202ENST00000434192 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
GTF2A1-202ENST00000434192 CSRNP3Q8WYN3 585 aa15.33■□□□□ 0.04
GTF2A1-202ENST00000434192 POLA2Q14181 598 aa15.26■□□□□ 0.03
GTF2A1-202ENST00000434192 ATXN8OSP0DMR3 200 aa15.24■□□□□ 0.03
GTF2A1-202ENST00000434192 ZBTB12Q9Y330 459 aaPredicted RBP14.92□□□□□ -0.02
GTF2A1-202ENST00000434192 RBM42Q9BTD8 480 aaKnown RBP14.79□□□□□ -0.04
GTF2A1-202ENST00000434192 FBLN2P98095 1184 aa14.76□□□□□ -0.05
GTF2A1-202ENST00000434192 OSCARQ8IYS5 282 aa14.76□□□□□ -0.05
GTF2A1-202ENST00000434192 MKRN4PQ13434 485 aaPredicted RBP14.7□□□□□ -0.06
GTF2A1-202ENST00000434192 AKT1S1Q96B36 256 aa14.55□□□□□ -0.08
GTF2A1-202ENST00000434192 SPDYE2BA6NHP3 402 aa14.5□□□□□ -0.09
GTF2A1-202ENST00000434192 SPDYE6P0CI01 402 aa14.5□□□□□ -0.09
GTF2A1-202ENST00000434192 SPDYE2Q495Y8 402 aa14.5□□□□□ -0.09
GTF2A1-202ENST00000434192 CCDC180Q9P1Z9 1646 aa14.49□□□□□ -0.09
GTF2A1-202ENST00000434192 REM2Q8IYK8 340 aaPredicted RBP14.44□□□□□ -0.1
GTF2A1-202ENST00000434192 ZNF692Q9BU19 519 aaPredicted RBP14.44□□□□□ -0.1
GTF2A1-202ENST00000434192 CHRDL2Q6WN34 429 aa14.35□□□□□ -0.11
GTF2A1-202ENST00000434192 SSUH2Q9Y2M2 353 aa14.35□□□□□ -0.11
GTF2A1-202ENST00000434192 POTEHQ6S545 545 aa14.31□□□□□ -0.12
GTF2A1-202ENST00000434192 PITPNM1O00562 1244 aa14.28□□□□□ -0.12
GTF2A1-202ENST00000434192 PABPN1Q86U42 306 aaKnown RBP eCLIP14.24□□□□□ -0.13
GTF2A1-202ENST00000434192 SPDYE4A6NLX3 237 aa14.21□□□□□ -0.13
GTF2A1-202ENST00000434192 CLEC11AQ9Y240 323 aa14.2□□□□□ -0.14
GTF2A1-202ENST00000434192 SPDYE1Q8NFV5 336 aaPredicted RBP14.18□□□□□ -0.14
GTF2A1-202ENST00000434192 PIP4P2Q8N4L2 257 aa14.1□□□□□ -0.15
GTF2A1-202ENST00000434192 FXR2P51116 673 aaKnown RBP eCLIP14.05□□□□□ -0.16
GTF2A1-202ENST00000434192 ABCC9O60706 1549 aa14.01□□□□□ -0.17
GTF2A1-202ENST00000434192 PRR29P0C7W0 189 aa13.98□□□□□ -0.17
GTF2A1-202ENST00000434192 PRKAR2AP13861 404 aaKnown RBP13.93□□□□□ -0.18
GTF2A1-202ENST00000434192 FKBP8Q14318 412 aa13.92□□□□□ -0.18
GTF2A1-202ENST00000434192 CHADLQ6NUI6 762 aa13.89□□□□□ -0.19
GTF2A1-202ENST00000434192 STAG3Q9UJ98 1225 aa13.88□□□□□ -0.19
GTF2A1-202ENST00000434192 PROM2Q8N271 834 aa13.85□□□□□ -0.19
GTF2A1-202ENST00000434192 HAX1O00165 279 aa13.78□□□□□ -0.2
GTF2A1-202ENST00000434192 CREBZFQ9NS37 354 aa13.71□□□□□ -0.21
GTF2A1-202ENST00000434192 FARP1Q9Y4F1 1045 aaPredicted RBP13.67□□□□□ -0.22
GTF2A1-202ENST00000434192 EVX2Q03828 476 aa13.63□□□□□ -0.23
GTF2A1-202ENST00000434192 C19orf67A6NJJ6 358 aa13.59□□□□□ -0.23
GTF2A1-202ENST00000434192 SP7Q8TDD2 431 aaPredicted RBP13.58□□□□□ -0.24
GTF2A1-202ENST00000434192 RB1CC1Q8TDY2 1594 aa13.56□□□□□ -0.24
GTF2A1-202ENST00000434192 MIER1Q8N108 512 aa13.54□□□□□ -0.24
GTF2A1-202ENST00000434192 CD44P16070 742 aaKnown RBP13.51□□□□□ -0.25
GTF2A1-202ENST00000434192 MNX1P50219 401 aaPredicted RBP13.51□□□□□ -0.25
GTF2A1-202ENST00000434192 NACADO15069 1562 aa13.5□□□□□ -0.25
GTF2A1-202ENST00000434192 ZCCHC6Q5VYS8 1495 aaKnown RBP13.49□□□□□ -0.25
GTF2A1-202ENST00000434192 UNC13AQ9UPW8 1703 aa13.49□□□□□ -0.25
GTF2A1-202ENST00000434192 PLCD3Q8N3E9 789 aa13.47□□□□□ -0.25
GTF2A1-202ENST00000434192 PLEKHG5O94827 1062 aa13.46□□□□□ -0.25
GTF2A1-202ENST00000434192 NPM1P06748 294 aaKnown RBP eCLIP13.46□□□□□ -0.25
GTF2A1-202ENST00000434192 FBXO3Q9UK99 471 aa13.46□□□□□ -0.25
GTF2A1-202ENST00000434192 ZRANB1Q9UGI0 708 aa13.39□□□□□ -0.27
GTF2A1-202ENST00000434192 MYO15BQ96JP2 1530 aa13.39□□□□□ -0.27
GTF2A1-202ENST00000434192 PAK3O75914 559 aaPredicted RBP13.34□□□□□ -0.27
GTF2A1-202ENST00000434192 DCAF1Q9Y4B6 1507 aa13.34□□□□□ -0.27
GTF2A1-202ENST00000434192 GABBR2O75899 941 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms