RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 DCAF8L2P0C7V8 631 aa29.53■■■□□ 2.32
SMC4-201ENST00000344722 NISCHQ9Y2I1 1504 aa29.32■■■□□ 2.28
SMC4-201ENST00000344722 SUPT5HO00267 1087 aaKnown RBP29.3■■■□□ 2.28
SMC4-201ENST00000344722 PELP1Q8IZL8 1130 aaKnown RBP28.91■■■□□ 2.22
SMC4-201ENST00000344722 SHROOM4Q9ULL8 1493 aa28.57■■■□□ 2.16
SMC4-201ENST00000344722 MYT1Q01538 1121 aa28.49■■■□□ 2.15
SMC4-201ENST00000344722 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
SMC4-201ENST00000344722 ZEB1P37275 1124 aaPredicted RBP28.22■■■□□ 2.11
SMC4-201ENST00000344722 CENPBP07199 599 aaPredicted RBP28.19■■■□□ 2.1
SMC4-201ENST00000344722 EHMT2Q96KQ7 1210 aa28■■■□□ 2.07
SMC4-201ENST00000344722 HRCP23327 699 aa27.72■■■□□ 2.03
SMC4-201ENST00000344722 APLP2Q06481 763 aa27.65■■■□□ 2.02
SMC4-201ENST00000344722 ERICH6Q7L0X2 663 aa27.62■■■□□ 2.01
SMC4-201ENST00000344722 CCER1Q8TC90 406 aaPredicted RBP27.55■■■□□ 2
SMC4-201ENST00000344722 FAM9AQ8IZU1 332 aaPredicted RBP27.51■■□□□ 1.99
SMC4-201ENST00000344722 TRIM26Q12899 539 aaPredicted RBP27.29■■□□□ 1.96
SMC4-201ENST00000344722 TTBK1Q5TCY1 1321 aaPredicted RBP27.28■■□□□ 1.96
SMC4-201ENST00000344722 YTHDC1Q96MU7 727 aaKnown RBP27.19■■□□□ 1.94
SMC4-201ENST00000344722 TRIM41Q8WV44 630 aa27.17■■□□□ 1.94
SMC4-201ENST00000344722 NEFLP07196 543 aa27.1■■□□□ 1.93
SMC4-201ENST00000344722 PPARGC1BQ86YN6 1023 aaKnown RBP26.91■■□□□ 1.9
SMC4-201ENST00000344722 CHIC1Q5VXU3 224 aa26.67■■□□□ 1.86
SMC4-201ENST00000344722 UBTFP17480 764 aaKnown RBP26.61■■□□□ 1.85
SMC4-201ENST00000344722 LOC105371045A0A1W2PR82 267 aa26.52■■□□□ 1.84
SMC4-201ENST00000344722 RANGAP1P46060 587 aaPredicted RBP26.5■■□□□ 1.83
SMC4-201ENST00000344722 DIEXFQ68CQ4 756 aaKnown RBP26.48■■□□□ 1.83
SMC4-201ENST00000344722 GTF3C3Q9Y5Q9 886 aa26.35■■□□□ 1.81
SMC4-201ENST00000344722 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.19■■□□□ 1.78
SMC4-201ENST00000344722 ATP1B4Q9UN42 357 aaPredicted RBP26.14■■□□□ 1.78
SMC4-201ENST00000344722 ACIN1Q9UKV3 1341 aaKnown RBP26.14■■□□□ 1.77
SMC4-201ENST00000344722 DAXXQ9UER7 740 aaPredicted RBP26.12■■□□□ 1.77
SMC4-201ENST00000344722 RTL5Q5HYW3 569 aaPredicted RBP26.04■■□□□ 1.76
SMC4-201ENST00000344722 HNRNPUL2Q1KMD3 747 aaKnown RBP26.02■■□□□ 1.76
SMC4-201ENST00000344722 ZNF316A6NFI3 1004 aaPredicted RBP25.8■■□□□ 1.72
SMC4-201ENST00000344722 ITGAEP38570 1179 aa25.78■■□□□ 1.72
SMC4-201ENST00000344722 BCANQ96GW7 911 aa25.7■■□□□ 1.71
SMC4-201ENST00000344722 CLSPNQ9HAW4 1339 aa25.67■■□□□ 1.7
SMC4-201ENST00000344722 CDK11AQ9UQ88 783 aaPredicted RBP25.66■■□□□ 1.7
SMC4-201ENST00000344722 DCAF1Q9Y4B6 1507 aa25.59■■□□□ 1.69
SMC4-201ENST00000344722 SCAF1Q9H7N4 1312 aaKnown RBP25.58■■□□□ 1.69
SMC4-201ENST00000344722 POLR3GLQ9BT43 218 aa25.53■■□□□ 1.68
SMC4-201ENST00000344722 NEUROD1Q13562 356 aa25.45■■□□□ 1.66
SMC4-201ENST00000344722 ANP32CO43423 234 aa25.44■■□□□ 1.66
SMC4-201ENST00000344722 MYT1LQ9UL68 1186 aa25.33■■□□□ 1.64
SMC4-201ENST00000344722 CNGB1Q14028 1251 aaPredicted RBP25.31■■□□□ 1.64
SMC4-201ENST00000344722 ANP32AP39687 249 aaKnown RBP25.21■■□□□ 1.63
SMC4-201ENST00000344722 FKBP8Q14318 412 aa25.15■■□□□ 1.62
SMC4-201ENST00000344722 FAM50AQ14320 339 aaKnown RBP25.15■■□□□ 1.62
SMC4-201ENST00000344722 EIF5BO60841 1220 aaKnown RBP24.94■■□□□ 1.58
SMC4-201ENST00000344722 TRIM52Q96A61 297 aa24.94■■□□□ 1.58
SMC4-201ENST00000344722 ANP32EQ9BTT0 268 aa24.93■■□□□ 1.58
SMC4-201ENST00000344722 MIER1Q8N108 512 aa24.86■■□□□ 1.57
SMC4-201ENST00000344722 GLIPR1L2Q4G1C9 344 aa24.85■■□□□ 1.57
SMC4-201ENST00000344722 CCDC180Q9P1Z9 1646 aa24.85■■□□□ 1.57
SMC4-201ENST00000344722 NPM2Q86SE8 214 aaKnown RBP24.82■■□□□ 1.56
SMC4-201ENST00000344722 CSRNP3Q8WYN3 585 aa24.81■■□□□ 1.56
SMC4-201ENST00000344722 MYO15BQ96JP2 1530 aa24.77■■□□□ 1.56
SMC4-201ENST00000344722 HNRNPUQ00839 825 aaKnown RBP eCLIP24.73■■□□□ 1.552e-22■■■■■ 68.1
SMC4-201ENST00000344722 ZBTB47Q9UFB7 747 aaPredicted RBP24.72■■□□□ 1.55
SMC4-201ENST00000344722 NBR1Q14596 966 aa24.71■■□□□ 1.55
SMC4-201ENST00000344722 DDX10Q13206 875 aaKnown RBP24.67■■□□□ 1.54
SMC4-201ENST00000344722 SLC4A1APQ9BWU0 796 aaKnown RBP24.65■■□□□ 1.54
SMC4-201ENST00000344722 ZNF326Q5BKZ1 582 aaKnown RBP24.62■■□□□ 1.53
SMC4-201ENST00000344722 CANXP27824 592 aaKnown RBP24.58■■□□□ 1.53
SMC4-201ENST00000344722 TONSLQ96HA7 1378 aa24.55■■□□□ 1.52
SMC4-201ENST00000344722 CCDC136Q96JN2 1154 aa24.54■■□□□ 1.52
SMC4-201ENST00000344722 ANP32BQ92688 251 aaKnown RBP24.52■■□□□ 1.52
SMC4-201ENST00000344722 BCL11AQ9H165 835 aa24.48■■□□□ 1.51
SMC4-201ENST00000344722 FAM9BQ8IZU0 186 aa24.47■■□□□ 1.51
SMC4-201ENST00000344722 ZCCHC6Q5VYS8 1495 aaKnown RBP24.47■■□□□ 1.51
SMC4-201ENST00000344722 SUPT16HQ9Y5B9 1047 aaKnown RBP24.4■■□□□ 1.5
SMC4-201ENST00000344722 UPF2Q9HAU5 1272 aaKnown RBP24.4■■□□□ 1.5
SMC4-201ENST00000344722 IRX6P78412 446 aaPredicted RBP24.35■■□□□ 1.49
SMC4-201ENST00000344722 DDRGK1Q96HY6 314 aa24.29■■□□□ 1.48
SMC4-201ENST00000344722 MRS2Q9HD23 443 aa24.28■■□□□ 1.48
SMC4-201ENST00000344722 HSP90AA1P07900 732 aaKnown RBP24.23■■□□□ 1.47
SMC4-201ENST00000344722 TMC1Q8TDI8 760 aa24.2■■□□□ 1.47
SMC4-201ENST00000344722 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.2■■□□□ 1.46
SMC4-201ENST00000344722 P3H3Q8IVL6 736 aa24.18■■□□□ 1.46
SMC4-201ENST00000344722 PPM1GO15355 546 aaPredicted RBP24.17■■□□□ 1.46
SMC4-201ENST00000344722 NOP58Q9Y2X3 529 aaKnown RBP24.15■■□□□ 1.46
SMC4-201ENST00000344722 CEP162Q5TB80 1403 aa24.13■■□□□ 1.45
SMC4-201ENST00000344722 PPP4R2Q9NY27 417 aa24.12■■□□□ 1.45
SMC4-201ENST00000344722 CLIP1P30622 1438 aa24.11■■□□□ 1.45
SMC4-201ENST00000344722 NEFMP07197 916 aa24.11■■□□□ 1.45
SMC4-201ENST00000344722 ERICH6BQ5W0A0 696 aa24.08■■□□□ 1.45
SMC4-201ENST00000344722 ARXQ96QS3 562 aa24.08■■□□□ 1.44
SMC4-201ENST00000344722 SALL2Q9Y467 1007 aaPredicted RBP24.07■■□□□ 1.44
SMC4-201ENST00000344722 PABPN1Q86U42 306 aaKnown RBP eCLIP24.06■■□□□ 1.44
SMC4-201ENST00000344722 RBM19Q9Y4C8 960 aaKnown RBP24.06■■□□□ 1.44
SMC4-201ENST00000344722 DEKP35659 375 aaKnown RBP24.05■■□□□ 1.44
SMC4-201ENST00000344722 BECN1Q14457 450 aa24.04■■□□□ 1.44
SMC4-201ENST00000344722 HIRIP3Q9BW71 556 aaPredicted RBP24.04■■□□□ 1.44
SMC4-201ENST00000344722 EEA1Q15075 1411 aa24.04■■□□□ 1.44
SMC4-201ENST00000344722 ABCC9O60706 1549 aa24.03■■□□□ 1.44
SMC4-201ENST00000344722 EIF4G2P78344 907 aaKnown RBP eCLIP24.02■■□□□ 1.44
SMC4-201ENST00000344722 GOLGA3Q08378 1498 aa24■■□□□ 1.43
SMC4-201ENST00000344722 SCRIBQ14160 1630 aa23.99■■□□□ 1.43
SMC4-201ENST00000344722 RTN4Q9NQC3 1192 aaKnown RBP23.98■■□□□ 1.43
SMC4-201ENST00000344722 TRIM44Q96DX7 344 aaPredicted RBP23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms