RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 AEBP2Q6ZN18 517 aaPredicted RBP29.44■■■□□ 2.3
SMC4-227ENST00000497984 CHIC1Q5VXU3 224 aa28.08■■■□□ 2.09
SMC4-227ENST00000497984 SENP3Q9H4L4 574 aaPredicted RBP25.02■■□□□ 1.6
SMC4-227ENST00000497984 PHF23Q9BUL5 403 aaPredicted RBP24.74■■□□□ 1.55
SMC4-227ENST00000497984 FOXD1Q16676 465 aa23.34■■□□□ 1.33
SMC4-227ENST00000497984 POTEDQ86YR6 584 aa23.13■■□□□ 1.29
SMC4-227ENST00000497984 PLPPR3Q6T4P5 718 aa22.46■■□□□ 1.19
SMC4-227ENST00000497984 MSH5O43196 834 aa22.04■■□□□ 1.12
SMC4-227ENST00000497984 PPP6R1Q9UPN7 881 aa21.96■■□□□ 1.11
SMC4-227ENST00000497984 ADRA2BP18089 450 aa21.87■■□□□ 1.09
SMC4-227ENST00000497984 PIAS4Q8N2W9 510 aaPredicted RBP21.81■■□□□ 1.08
SMC4-227ENST00000497984 MAPK8IP2Q13387 824 aaPredicted RBP20.05■□□□□ 0.8
SMC4-227ENST00000497984 SCAF1Q9H7N4 1312 aaKnown RBP19.95■□□□□ 0.78
SMC4-227ENST00000497984 DMRT2Q9Y5R5 561 aa19.89■□□□□ 0.77
SMC4-227ENST00000497984 PPP4R3CPQ6ZMV5 832 aa19.73■□□□□ 0.75
SMC4-227ENST00000497984 CACNB1Q02641 598 aaPredicted RBP19.49■□□□□ 0.71
SMC4-227ENST00000497984 CNKSR2Q8WXI2 1034 aa19.31■□□□□ 0.68
SMC4-227ENST00000497984 HOXD11P31277 338 aaPredicted RBP19.24■□□□□ 0.67
SMC4-227ENST00000497984 RNF216Q9NWF9 866 aaPredicted RBP19.11■□□□□ 0.65
SMC4-227ENST00000497984 DCAF8L1A6NGE4 600 aa18.99■□□□□ 0.63
SMC4-227ENST00000497984 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
SMC4-227ENST00000497984 RNF39Q9H2S5 420 aa18.81■□□□□ 0.6
SMC4-227ENST00000497984 NPM3O75607 178 aaKnown RBP18.75■□□□□ 0.59
SMC4-227ENST00000497984 KCNA4P22459 653 aa18.53■□□□□ 0.56
SMC4-227ENST00000497984 DNAJC5BQ9UF47 199 aa18.53■□□□□ 0.56
SMC4-227ENST00000497984 C1QBPQ07021 282 aaKnown RBP18.41■□□□□ 0.54
SMC4-227ENST00000497984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.512e-7■■■■■ 35.7
SMC4-227ENST00000497984 U3KPZ7 1027 aaPredicted RBP17.95■□□□□ 0.46
SMC4-227ENST00000497984 POTEHQ6S545 545 aa17.91■□□□□ 0.46
SMC4-227ENST00000497984 SLC4A2P04920 1241 aa17.9■□□□□ 0.46
SMC4-227ENST00000497984 SPINK5Q9NQ38 1064 aaPredicted RBP17.65■□□□□ 0.42
SMC4-227ENST00000497984 CAPN15O75808 1086 aa17.55■□□□□ 0.4
SMC4-227ENST00000497984 SLC4A1APQ9BWU0 796 aaKnown RBP17.49■□□□□ 0.39
SMC4-227ENST00000497984 DSG3P32926 999 aa17.47■□□□□ 0.39
SMC4-227ENST00000497984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.42■□□□□ 0.38
SMC4-227ENST00000497984 HNRNPUL2Q1KMD3 747 aaKnown RBP17.42■□□□□ 0.38
SMC4-227ENST00000497984 APLP2Q06481 763 aa17.38■□□□□ 0.37
SMC4-227ENST00000497984 SAMD1Q6SPF0 538 aaPredicted RBP17.36■□□□□ 0.37
SMC4-227ENST00000497984 MYCNP04198 464 aaPredicted RBP17.32■□□□□ 0.36
SMC4-227ENST00000497984 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
SMC4-227ENST00000497984 ZNF219Q9P2Y4 722 aaPredicted RBP17.29■□□□□ 0.36
SMC4-227ENST00000497984 FOXD4L1Q9NU39 408 aa17.23■□□□□ 0.35
SMC4-227ENST00000497984 ABCB7O75027 752 aa17.18■□□□□ 0.34
SMC4-227ENST00000497984 ZBTB22O15209 634 aa17.08■□□□□ 0.32
SMC4-227ENST00000497984 ATF5Q9Y2D1 282 aaPredicted RBP16.95■□□□□ 0.3
SMC4-227ENST00000497984 POLA2Q14181 598 aa16.9■□□□□ 0.3
SMC4-227ENST00000497984 ATXN8OSP0DMR3 200 aa16.68■□□□□ 0.26
SMC4-227ENST00000497984 RBM42Q9BTD8 480 aaKnown RBP16.61■□□□□ 0.25
SMC4-227ENST00000497984 ZBTB12Q9Y330 459 aaPredicted RBP16.54■□□□□ 0.24
SMC4-227ENST00000497984 CHRDL2Q6WN34 429 aa16.51■□□□□ 0.23
SMC4-227ENST00000497984 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
SMC4-227ENST00000497984 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
SMC4-227ENST00000497984 SP7Q8TDD2 431 aaPredicted RBP16.37■□□□□ 0.21
SMC4-227ENST00000497984 AKT1S1Q96B36 256 aa16.29■□□□□ 0.2
SMC4-227ENST00000497984 EHMT2Q96KQ7 1210 aa16.22■□□□□ 0.19
SMC4-227ENST00000497984 FBLN2P98095 1184 aa16.2■□□□□ 0.18
SMC4-227ENST00000497984 MKRN4PQ13434 485 aaPredicted RBP16.18■□□□□ 0.18
SMC4-227ENST00000497984 REM2Q8IYK8 340 aaPredicted RBP16.14■□□□□ 0.17
SMC4-227ENST00000497984 SPDYE2BA6NHP3 402 aa16.07■□□□□ 0.16
SMC4-227ENST00000497984 SPDYE6P0CI01 402 aa16.07■□□□□ 0.16
SMC4-227ENST00000497984 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
SMC4-227ENST00000497984 PITPNM1O00562 1244 aa15.97■□□□□ 0.15
SMC4-227ENST00000497984 PIP4P2Q8N4L2 257 aa15.97■□□□□ 0.15
SMC4-227ENST00000497984 SSUH2Q9Y2M2 353 aa15.91■□□□□ 0.14
SMC4-227ENST00000497984 ZNF692Q9BU19 519 aaPredicted RBP15.88■□□□□ 0.13
SMC4-227ENST00000497984 HAX1O00165 279 aa15.87■□□□□ 0.13
SMC4-227ENST00000497984 FXR2P51116 673 aaKnown RBP eCLIP15.82■□□□□ 0.128e-21■■■■■ 76.4
SMC4-227ENST00000497984 EVX2Q03828 476 aa15.76■□□□□ 0.11
SMC4-227ENST00000497984 SPDYE1Q8NFV5 336 aaPredicted RBP15.74■□□□□ 0.11
SMC4-227ENST00000497984 CLEC11AQ9Y240 323 aa15.69■□□□□ 0.1
SMC4-227ENST00000497984 PABPN1Q86U42 306 aaKnown RBP eCLIP15.67■□□□□ 0.1
SMC4-227ENST00000497984 PRKAR2AP13861 404 aaKnown RBP15.55■□□□□ 0.08
SMC4-227ENST00000497984 PRR29P0C7W0 189 aa15.46■□□□□ 0.07
SMC4-227ENST00000497984 SPDYE4A6NLX3 237 aa15.44■□□□□ 0.06
SMC4-227ENST00000497984 CHADLQ6NUI6 762 aa15.42■□□□□ 0.06
SMC4-227ENST00000497984 LHX8Q68G74 356 aa15.35■□□□□ 0.05
SMC4-227ENST00000497984 C19orf67A6NJJ6 358 aa15.3■□□□□ 0.04
SMC4-227ENST00000497984 GABBR2O75899 941 aa15.25■□□□□ 0.03
SMC4-227ENST00000497984 STAG3Q9UJ98 1225 aa15.25■□□□□ 0.03
SMC4-227ENST00000497984 FARP1Q9Y4F1 1045 aaPredicted RBP15.2■□□□□ 0.02
SMC4-227ENST00000497984 PROM2Q8N271 834 aa15.16■□□□□ 0.02
SMC4-227ENST00000497984 CREBZFQ9NS37 354 aa15.16■□□□□ 0.02
SMC4-227ENST00000497984 PLSCR2Q9NRY7 297 aa15.09■□□□□ 0.01
SMC4-227ENST00000497984 CD44P16070 742 aaKnown RBP15.05■□□□□ -0
SMC4-227ENST00000497984 POTEIP0CG38 1075 aa14.99□□□□□ -0.01
SMC4-227ENST00000497984 MNX1P50219 401 aaPredicted RBP14.95□□□□□ -0.02
SMC4-227ENST00000497984 ZNF579Q8NAF0 562 aaKnown RBP14.86□□□□□ -0.03
SMC4-227ENST00000497984 ZRANB1Q9UGI0 708 aa14.86□□□□□ -0.03
SMC4-227ENST00000497984 FKBP8Q14318 412 aa14.83□□□□□ -0.04
SMC4-227ENST00000497984 NPM1P06748 294 aaKnown RBP eCLIP14.82□□□□□ -0.04
SMC4-227ENST00000497984 CLCN6P51797 869 aa14.81□□□□□ -0.04
SMC4-227ENST00000497984 PAK3O75914 559 aaPredicted RBP14.73□□□□□ -0.05
SMC4-227ENST00000497984 PHF12Q96QT6 1004 aa14.7□□□□□ -0.06
SMC4-227ENST00000497984 MIER1Q8N108 512 aa14.69□□□□□ -0.06
SMC4-227ENST00000497984 GALR2O43603 387 aaPredicted RBP14.67□□□□□ -0.06
SMC4-227ENST00000497984 PLEKHG5O94827 1062 aa14.62□□□□□ -0.07
SMC4-227ENST00000497984 DCBLD2Q96PD2 775 aa14.6□□□□□ -0.07
SMC4-227ENST00000497984 PLCD3Q8N3E9 789 aa14.58□□□□□ -0.08
SMC4-227ENST00000497984 TSPYL2Q9H2G4 693 aaPredicted RBP14.58□□□□□ -0.08
SMC4-227ENST00000497984 OTUD5Q96G74 571 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms