RNA–Protein interactions for RNA: ENST00000473711.1

SP140-208, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 644 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-208ENST00000473711 AEBP2Q6ZN18 517 aaPredicted RBP27.2■■□□□ 1.94
SP140-208ENST00000473711 CHIC1Q5VXU3 224 aa26.06■■□□□ 1.76
SP140-208ENST00000473711 NISCHQ9Y2I1 1504 aa24.6■■□□□ 1.53
SP140-208ENST00000473711 SENP3Q9H4L4 574 aaPredicted RBP23.24■■□□□ 1.31
SP140-208ENST00000473711 PHF23Q9BUL5 403 aaPredicted RBP22.93■■□□□ 1.26
SP140-208ENST00000473711 FOXD1Q16676 465 aa21.58■■□□□ 1.05
SP140-208ENST00000473711 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
SP140-208ENST00000473711 PLPPR3Q6T4P5 718 aa20.93■□□□□ 0.94
SP140-208ENST00000473711 ZCCHC6Q5VYS8 1495 aaKnown RBP20.6■□□□□ 0.89
SP140-208ENST00000473711 ABCC9O60706 1549 aa20.58■□□□□ 0.88
SP140-208ENST00000473711 DCAF8L2P0C7V8 631 aa20.54■□□□□ 0.88
SP140-208ENST00000473711 PPP6R1Q9UPN7 881 aa20.31■□□□□ 0.84
SP140-208ENST00000473711 DCAF1Q9Y4B6 1507 aa20.29■□□□□ 0.84
SP140-208ENST00000473711 ADRA2BP18089 450 aa20.28■□□□□ 0.84
SP140-208ENST00000473711 PIAS4Q8N2W9 510 aaPredicted RBP20.26■□□□□ 0.83
SP140-208ENST00000473711 MSH5O43196 834 aa20.18■□□□□ 0.82
SP140-208ENST00000473711 MYO15BQ96JP2 1530 aa20.12■□□□□ 0.81
SP140-208ENST00000473711 NACADO15069 1562 aa20.08■□□□□ 0.81
SP140-208ENST00000473711 SHROOM4Q9ULL8 1493 aa20.04■□□□□ 0.8
SP140-208ENST00000473711 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
SP140-208ENST00000473711 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
SP140-208ENST00000473711 DNAJC5BQ9UF47 199 aa19.52■□□□□ 0.72
SP140-208ENST00000473711 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
SP140-208ENST00000473711 PABPN1Q86U42 306 aaKnown RBP eCLIP19.44■□□□□ 0.7
SP140-208ENST00000473711 BICRAQ9NZM4 1560 aa19.36■□□□□ 0.69
SP140-208ENST00000473711 POTEDQ86YR6 584 aa19.32■□□□□ 0.68
SP140-208ENST00000473711 SUPT5HO00267 1087 aaKnown RBP19.22■□□□□ 0.67
SP140-208ENST00000473711 CECR2Q9BXF3 1484 aa19.16■□□□□ 0.66
SP140-208ENST00000473711 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
SP140-208ENST00000473711 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.63
SP140-208ENST00000473711 BAZ1AQ9NRL2 1556 aaPredicted RBP18.98■□□□□ 0.63
SP140-208ENST00000473711 SMARCA4P51532 1647 aa18.92■□□□□ 0.62
SP140-208ENST00000473711 WIZO95785 1651 aa18.83■□□□□ 0.61
SP140-208ENST00000473711 EIF4G1Q04637 1599 aaKnown RBP18.79■□□□□ 0.6
SP140-208ENST00000473711 ATAD2BQ9ULI0 1458 aa18.7■□□□□ 0.58
SP140-208ENST00000473711 PEG3Q9GZU2 1588 aa18.67■□□□□ 0.58
SP140-208ENST00000473711 SMARCA2P51531 1590 aa18.65■□□□□ 0.58
SP140-208ENST00000473711 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
SP140-208ENST00000473711 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
SP140-208ENST00000473711 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.56
SP140-208ENST00000473711 NCAPD3P42695 1498 aa18.57■□□□□ 0.56
SP140-208ENST00000473711 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
SP140-208ENST00000473711 MAPK8IP2Q13387 824 aaPredicted RBP18.56■□□□□ 0.56
SP140-208ENST00000473711 DNAJC5Q9H3Z4 198 aa18.5■□□□□ 0.55
SP140-208ENST00000473711 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
SP140-208ENST00000473711 HMGXB3Q12766 1538 aa18.47■□□□□ 0.55
SP140-208ENST00000473711 DMRT2Q9Y5R5 561 aa18.44■□□□□ 0.54
SP140-208ENST00000473711 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
SP140-208ENST00000473711 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
SP140-208ENST00000473711 CFTRP13569 1480 aa18.09■□□□□ 0.49
SP140-208ENST00000473711 TRIM41Q8WV44 630 aa18.06■□□□□ 0.48
SP140-208ENST00000473711 ABCC8Q09428 1581 aa18■□□□□ 0.47
SP140-208ENST00000473711 NESP48681 1621 aa18■□□□□ 0.47
SP140-208ENST00000473711 CNKSR2Q8WXI2 1034 aa17.98■□□□□ 0.47
SP140-208ENST00000473711 LAMC3Q9Y6N6 1575 aa17.92■□□□□ 0.46
SP140-208ENST00000473711 WRNQ14191 1432 aaPredicted RBP eCLIP17.92■□□□□ 0.46
SP140-208ENST00000473711 PRDM2Q13029 1718 aa17.89■□□□□ 0.45
SP140-208ENST00000473711 FANCD2Q9BXW9 1451 aa17.88■□□□□ 0.45
SP140-208ENST00000473711 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
SP140-208ENST00000473711 HOXD11P31277 338 aaPredicted RBP17.83■□□□□ 0.44
SP140-208ENST00000473711 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
SP140-208ENST00000473711 CUX1P39880 1505 aa17.78■□□□□ 0.44
SP140-208ENST00000473711 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
SP140-208ENST00000473711 FAM9AQ8IZU1 332 aaPredicted RBP17.77■□□□□ 0.44
SP140-208ENST00000473711 RNF216Q9NWF9 866 aaPredicted RBP17.77■□□□□ 0.44
SP140-208ENST00000473711 NCBP3Q53F19 620 aaKnown RBP17.76■□□□□ 0.43
SP140-208ENST00000473711 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
SP140-208ENST00000473711 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
SP140-208ENST00000473711 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
SP140-208ENST00000473711 DCAF8L1A6NGE4 600 aa17.7■□□□□ 0.42
SP140-208ENST00000473711 URB2Q14146 1524 aaKnown RBP17.67■□□□□ 0.42
SP140-208ENST00000473711 SOGA1O94964 1423 aa17.66■□□□□ 0.42
SP140-208ENST00000473711 TOPBP1Q92547 1522 aa17.66■□□□□ 0.42
SP140-208ENST00000473711 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
SP140-208ENST00000473711 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
SP140-208ENST00000473711 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
SP140-208ENST00000473711 RUSC2Q8N2Y8 1516 aa17.62■□□□□ 0.41
SP140-208ENST00000473711 LOC105371045A0A1W2PR82 267 aa17.61■□□□□ 0.41
SP140-208ENST00000473711 MRC2Q9UBG0 1479 aa17.61■□□□□ 0.41
SP140-208ENST00000473711 CSRNP3Q8WYN3 585 aa17.56■□□□□ 0.4
SP140-208ENST00000473711 POLA1P09884 1462 aaPredicted RBP17.56■□□□□ 0.4
SP140-208ENST00000473711 EHMT2Q96KQ7 1210 aa17.55■□□□□ 0.4
SP140-208ENST00000473711 RAD54L2Q9Y4B4 1467 aa17.55■□□□□ 0.4
SP140-208ENST00000473711 EEA1Q15075 1411 aa17.55■□□□□ 0.4
SP140-208ENST00000473711 CUX2O14529 1486 aa17.5■□□□□ 0.39
SP140-208ENST00000473711 KIF27Q86VH2 1401 aa17.49■□□□□ 0.39
SP140-208ENST00000473711 WDR62O43379 1518 aa17.49■□□□□ 0.39
SP140-208ENST00000473711 THOC2Q8NI27 1593 aaKnown RBP17.46■□□□□ 0.39
SP140-208ENST00000473711 ABCA10Q8WWZ4 1543 aa17.44■□□□□ 0.38
SP140-208ENST00000473711 NPM3O75607 178 aaKnown RBP17.44■□□□□ 0.38
SP140-208ENST00000473711 TDRD9Q8NDG6 1382 aaKnown RBP17.4■□□□□ 0.38
SP140-208ENST00000473711 IGF1RP08069 1367 aa17.39■□□□□ 0.37
SP140-208ENST00000473711 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
SP140-208ENST00000473711 TARBP1Q13395 1621 aaKnown RBP17.37■□□□□ 0.37
SP140-208ENST00000473711 WDR97A6NE52 1622 aa17.34■□□□□ 0.37
SP140-208ENST00000473711 UBTFP17480 764 aaKnown RBP17.34■□□□□ 0.37
SP140-208ENST00000473711 GAPVD1Q14C86 1478 aa17.32■□□□□ 0.36
SP140-208ENST00000473711 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.36
SP140-208ENST00000473711 GOLGA3Q08378 1498 aa17.31■□□□□ 0.36
SP140-208ENST00000473711 PRXQ9BXM0 1461 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms