RNA–Protein interactions for RNA: ENST00000470240.5

SMC4-212, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-212ENST00000470240 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
SMC4-212ENST00000470240 CHIC1Q5VXU3 224 aa23.18■■□□□ 1.3
SMC4-212ENST00000470240 SENP3Q9H4L4 574 aaPredicted RBP20.45■□□□□ 0.86
SMC4-212ENST00000470240 PHF23Q9BUL5 403 aaPredicted RBP20.31■□□□□ 0.84
SMC4-212ENST00000470240 FOXD1Q16676 465 aa18.95■□□□□ 0.62
SMC4-212ENST00000470240 PLPPR3Q6T4P5 718 aa18.76■□□□□ 0.59
SMC4-212ENST00000470240 ADRA2BP18089 450 aa18.02■□□□□ 0.48
SMC4-212ENST00000470240 PPP6R1Q9UPN7 881 aa18.01■□□□□ 0.47
SMC4-212ENST00000470240 PIAS4Q8N2W9 510 aaPredicted RBP17.89■□□□□ 0.45
SMC4-212ENST00000470240 MSH5O43196 834 aa17.64■□□□□ 0.41
SMC4-212ENST00000470240 NISCHQ9Y2I1 1504 aa16.78■□□□□ 0.28
SMC4-212ENST00000470240 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
SMC4-212ENST00000470240 PPP4R3CPQ6ZMV5 832 aa16.48■□□□□ 0.23
SMC4-212ENST00000470240 POTEDQ86YR6 584 aa16.46■□□□□ 0.23
SMC4-212ENST00000470240 MAPK8IP2Q13387 824 aaPredicted RBP16.41■□□□□ 0.22
SMC4-212ENST00000470240 DMRT2Q9Y5R5 561 aa16.24■□□□□ 0.19
SMC4-212ENST00000470240 CNKSR2Q8WXI2 1034 aa16.09■□□□□ 0.17
SMC4-212ENST00000470240 NCBP3Q53F19 620 aaKnown RBP16.03■□□□□ 0.16
SMC4-212ENST00000470240 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
SMC4-212ENST00000470240 KCNA4P22459 653 aa15.8■□□□□ 0.12
SMC4-212ENST00000470240 HOXD11P31277 338 aaPredicted RBP15.79■□□□□ 0.12
SMC4-212ENST00000470240 NPM3O75607 178 aaKnown RBP15.72■□□□□ 0.11
SMC4-212ENST00000470240 DCAF8L1A6NGE4 600 aa15.67■□□□□ 0.1
SMC4-212ENST00000470240 DNAJC5BQ9UF47 199 aa15.23■□□□□ 0.03
SMC4-212ENST00000470240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.012e-7■■■■■ 35.7
SMC4-212ENST00000470240 SLC4A1APQ9BWU0 796 aaKnown RBP15.04■□□□□ -0
SMC4-212ENST00000470240 RNF39Q9H2S5 420 aa15.04■□□□□ -0
SMC4-212ENST00000470240 CACNB1Q02641 598 aaPredicted RBP14.91□□□□□ -0.02
SMC4-212ENST00000470240 C1QBPQ07021 282 aaKnown RBP14.88□□□□□ -0.03
SMC4-212ENST00000470240 SLC4A2P04920 1241 aa14.87□□□□□ -0.03
SMC4-212ENST00000470240 U3KPZ7 1027 aaPredicted RBP14.79□□□□□ -0.04
SMC4-212ENST00000470240 FOXD4L1Q9NU39 408 aa14.65□□□□□ -0.06
SMC4-212ENST00000470240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.61□□□□□ -0.07
SMC4-212ENST00000470240 HNRNPUL2Q1KMD3 747 aaKnown RBP14.61□□□□□ -0.07
SMC4-212ENST00000470240 MYCNP04198 464 aaPredicted RBP14.58□□□□□ -0.08
SMC4-212ENST00000470240 APLP2Q06481 763 aa14.54□□□□□ -0.08
SMC4-212ENST00000470240 SAMD1Q6SPF0 538 aaPredicted RBP14.53□□□□□ -0.08
SMC4-212ENST00000470240 CCDC180Q9P1Z9 1646 aa14.52□□□□□ -0.09
SMC4-212ENST00000470240 CAPN15O75808 1086 aa14.5□□□□□ -0.09
SMC4-212ENST00000470240 ZBTB22O15209 634 aa14.49□□□□□ -0.09
SMC4-212ENST00000470240 SPINK5Q9NQ38 1064 aaPredicted RBP14.46□□□□□ -0.09
SMC4-212ENST00000470240 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
SMC4-212ENST00000470240 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
SMC4-212ENST00000470240 ZNF219Q9P2Y4 722 aaPredicted RBP14.34□□□□□ -0.11
SMC4-212ENST00000470240 DSG3P32926 999 aa14.23□□□□□ -0.13
SMC4-212ENST00000470240 CSRNP3Q8WYN3 585 aa14.22□□□□□ -0.13
SMC4-212ENST00000470240 ZCCHC6Q5VYS8 1495 aaKnown RBP14.19□□□□□ -0.14
SMC4-212ENST00000470240 ABCB7O75027 752 aa14.18□□□□□ -0.14
SMC4-212ENST00000470240 ATF5Q9Y2D1 282 aaPredicted RBP14.14□□□□□ -0.15
SMC4-212ENST00000470240 ATXN8OSP0DMR3 200 aa14.13□□□□□ -0.15
SMC4-212ENST00000470240 POLA2Q14181 598 aa14.03□□□□□ -0.16
SMC4-212ENST00000470240 SHROOM4Q9ULL8 1493 aa14□□□□□ -0.17
SMC4-212ENST00000470240 DCAF1Q9Y4B6 1507 aa13.9□□□□□ -0.18
SMC4-212ENST00000470240 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
SMC4-212ENST00000470240 DCAF8L2P0C7V8 631 aa13.78□□□□□ -0.2
SMC4-212ENST00000470240 SUPT5HO00267 1087 aaKnown RBP13.71□□□□□ -0.21
SMC4-212ENST00000470240 FBLN2P98095 1184 aa13.68□□□□□ -0.22
SMC4-212ENST00000470240 RBM42Q9BTD8 480 aaKnown RBP13.64□□□□□ -0.23
SMC4-212ENST00000470240 MYO15BQ96JP2 1530 aa13.59□□□□□ -0.23
SMC4-212ENST00000470240 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
SMC4-212ENST00000470240 MKRN4PQ13434 485 aaPredicted RBP13.5□□□□□ -0.25
SMC4-212ENST00000470240 NACADO15069 1562 aa13.41□□□□□ -0.26
SMC4-212ENST00000470240 ABCC9O60706 1549 aa13.41□□□□□ -0.26
SMC4-212ENST00000470240 SPDYE2BA6NHP3 402 aa13.39□□□□□ -0.27
SMC4-212ENST00000470240 SPDYE6P0CI01 402 aa13.39□□□□□ -0.27
SMC4-212ENST00000470240 SPDYE2Q495Y8 402 aa13.39□□□□□ -0.27
SMC4-212ENST00000470240 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
SMC4-212ENST00000470240 AKT1S1Q96B36 256 aa13.38□□□□□ -0.27
SMC4-212ENST00000470240 ZNF692Q9BU19 519 aaPredicted RBP13.33□□□□□ -0.28
SMC4-212ENST00000470240 REM2Q8IYK8 340 aaPredicted RBP13.24□□□□□ -0.29
SMC4-212ENST00000470240 SSUH2Q9Y2M2 353 aa13.22□□□□□ -0.29
SMC4-212ENST00000470240 RB1CC1Q8TDY2 1594 aa13.22□□□□□ -0.29
SMC4-212ENST00000470240 SPDYE4A6NLX3 237 aa13.16□□□□□ -0.3
SMC4-212ENST00000470240 RSF1Q96T23 1441 aaPredicted RBP13.15□□□□□ -0.3
SMC4-212ENST00000470240 CHRDL2Q6WN34 429 aa13.14□□□□□ -0.31
SMC4-212ENST00000470240 PABPN1Q86U42 306 aaKnown RBP eCLIP13.13□□□□□ -0.31
SMC4-212ENST00000470240 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
SMC4-212ENST00000470240 SPDYE1Q8NFV5 336 aaPredicted RBP13.08□□□□□ -0.32
SMC4-212ENST00000470240 CLEC11AQ9Y240 323 aa13.07□□□□□ -0.32
SMC4-212ENST00000470240 POTEHQ6S545 545 aa13.01□□□□□ -0.33
SMC4-212ENST00000470240 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
SMC4-212ENST00000470240 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
SMC4-212ENST00000470240 CECR2Q9BXF3 1484 aa12.94□□□□□ -0.34
SMC4-212ENST00000470240 FKBP8Q14318 412 aa12.94□□□□□ -0.34
SMC4-212ENST00000470240 PRR29P0C7W0 189 aa12.9□□□□□ -0.34
SMC4-212ENST00000470240 PIP4P2Q8N4L2 257 aa12.9□□□□□ -0.34
SMC4-212ENST00000470240 WIZO95785 1651 aa12.89□□□□□ -0.35
SMC4-212ENST00000470240 TRIM41Q8WV44 630 aa12.89□□□□□ -0.35
SMC4-212ENST00000470240 UNC13AQ9UPW8 1703 aa12.88□□□□□ -0.35
SMC4-212ENST00000470240 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
SMC4-212ENST00000470240 FXR2P51116 673 aaKnown RBP eCLIP12.87□□□□□ -0.358e-21■■■■■ 76.4
SMC4-212ENST00000470240 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
SMC4-212ENST00000470240 TOP2AP11388 1531 aaKnown RBP12.83□□□□□ -0.36
SMC4-212ENST00000470240 PROM2Q8N271 834 aa12.81□□□□□ -0.36
SMC4-212ENST00000470240 PRKAR2AP13861 404 aaKnown RBP12.79□□□□□ -0.36
SMC4-212ENST00000470240 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
SMC4-212ENST00000470240 CHADLQ6NUI6 762 aa12.72□□□□□ -0.37
SMC4-212ENST00000470240 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
SMC4-212ENST00000470240 HRCP23327 699 aa12.71□□□□□ -0.37
SMC4-212ENST00000470240 EIF4G1Q04637 1599 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 154.5 ms